cluster # 5368

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Oryza sativa
cluster # 5368 cluster # 5368 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5368#0 length = 803 sequences # 2

consensus_5368#1 length = 247 sequences # 1

consensusID : consensus_5368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 803
fasta sequence

                              [TGCTGGTGCGCCCGCCGCGCTCGCCCCGAGAGGACCCTATGGCGACGCAGCTCTCCGCCACCTTCGCCCCTGCCGCGACCACCACCGCCACGCCCCTCCCGGCGCCGCAGCAGCGGCTCCGGCACGGCCGCCGCTGCTACCACGCGCTGTCGCTGCGCCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGCGAGGTGGAGCCCGCTGCCCCGGCGGCGCCCGCCAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTCCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCGAGGCAGCGCCGCGGCGCGGAAGAGGAAGGGCGGCGCCGGGGCGTCGTCCAAGTCCAAGGCTGCCGTGACGCTCCCGCCCGTGCCGCTGCGGGAGGCCCGGTCTTCCGTGGGCGTGCCCGTTGAGTTCGGGTTCAGCGCGTACAGCGAGAGGCTCAACGGCGCGCTCGCGGCGGTCGGCCTGGCGGCGCTGCTGCTCGTGGAGCTCGGCTCCGGGAAGGCGCTCGTCAAGTACCACCAGCCGGCCACGCTGTTCCTCCAGGTGTACACCGTCGCCGCGGCGGGCGCCGTGTTCGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACCAAGCCGCCGGCTACC-GGTGAATGATTGGCACATGGGGGTTTCTATTTGACTTTTTTGTAGGATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGACAAATTGTGTTGTGAAATATTGAA]

[+] EMBL AK108194             [TGCTGGTGCGCCCGCCGCGCTCGCCCCGAGAGGACCCTATGGCGACGCAGCTCTCCGCCACCTTCGCCCCTGCCGCGACCACCACCGCCACGCCCCTCCCGGCGCCGCAGCAGCGGCTCCGGCACGGCCGCCGCTGCTACCACGCGCTGTCGCTGCGCCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGCGAGGTGGAGCCCGCTGCCCCGGCGGCGCCCGCCAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTCCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCGAGGCAGCGCCGCGGCGCGGAAGAGGAAGGGCGGCGCCGGGGCGTCGTCCAAGTCCAAGGCTGCCGTGACGCTCCCGCCCGTGCCGCTGCGGGAGGCCCGGTCTTCCGTGGGCGTGCCCGTTGAGTTCGGGTTCAGCGCGTACAGCGAGAGGCTCAACGGCGCGCTCGCGGCGGTCGGCCTGGCGGCGCTGCTGCTCGTGGAGCTCGGCTCCGGGAAGGCGCTCGTCAAGTACCACCAGCCGGCCACGCTGTTCCTCCAGGTGTACACCGTCGCCGCGGCGGGCGCCGTGTTCGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACCAAGCCGCCGGCTACC GGTGAATGATTGGCACATGGGGGTTTCTATTTGACTTTTTTGTAGGATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGACAAATTGTGTTGTGAAATATTG  ]
[+] EMBL AU173951             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCTCCGGGAAGGCGCTCGTCAAGTACCNCCAGCCGGCCNCGCTGTTCCTCCAGGTGTACNCCGTCGCCGCGGCGGGCGCCGTGTTNGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACCNANCCGCCGGCTACCGGGTGAATGATTGGCACATGGGGGTTTNTATTTGACTTTTTTGTAGGATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGACAAATTGTGTTGTGAAAaaaaaaa]




>consensus_5368#0
TGCTGGTGCGCCCGCCGCGCTCGCCCCGAGAGGACCCTATGGCGACGCAGCTCTCCGCCA
CCTTCGCCCCTGCCGCGACCACCACCGCCACGCCCCTCCCGGCGCCGCAGCAGCGGCTCC
GGCACGGCCGCCGCTGCTACCACGCGCTGTCGCTGCGCCCTCCCCGCGCGGCGTCCGGCG
ATGACGGCGCCGGCGGCGAGGTGGAGCCCGCTGCCCCGGCGGCGCCCGCCAAGACGGCCA
CCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTCCTGCGCATCAAGTCCCGCG
TCGGGCCCAAGAAGCGAGGCAGCGCCGCGGCGCGGAAGAGGAAGGGCGGCGCCGGGGCGT
CGTCCAAGTCCAAGGCTGCCGTGACGCTCCCGCCCGTGCCGCTGCGGGAGGCCCGGTCTT
CCGTGGGCGTGCCCGTTGAGTTCGGGTTCAGCGCGTACAGCGAGAGGCTCAACGGCGCGC
TCGCGGCGGTCGGCCTGGCGGCGCTGCTGCTCGTGGAGCTCGGCTCCGGGAAGGCGCTCG
TCAAGTACCACCAGCCGGCCACGCTGTTCCTCCAGGTGTACACCGTCGCCGCGGCGGGCG
CCGTGTTCGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACCA
AGCCGCCGGCTACCGGTGAATGATTGGCACATGGGGGTTTCTATTTGACTTTTTTGTAGG
ATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGAC
AAATTGTGTTGTGAAATATTGAA

consensusID : consensus_5368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [NTNCGCNTGNCACCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGNAAGGTTGGAGCCCGCTGCCCCGGCGGCGCCCGCTAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTNCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCNAGGCAGCNCCGCGGCNGGAAAGATGAAGGGCGGCGCNGGGCGTCGTCCAATTCAAAGGTTGCGTTANCNTTCCCG]

[+] EMBL C73585               [NTNCGCNTGNCACCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGNAAGGTTGGAGCCCGCTGCCCCGGCGGCGCCCGCTAAGACGGCCACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTNCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCNAGGCAGCNCCGCGGCNGGAAAGATGAAGGGCGGCGCNGGGCGTCGTCCAATTCAAAGGTTGCGTTANCNTTCCCG]




>consensus_5368#1
NTNCGCNTGNCACCCTCCCCGCGCGGCGTCCGGCGATGACGGCGCCGGCGGNAAGGTTGG
AGCCCGCTGCCCCGGCGGCGCCCGCTAAGACGGCCACCGCCACGGACGACGGCGGCGACG
ACTTCGAGGAGCGCGTNCTGCGCATCAAGTCCCGCGTCGGGCCCAAGAAGCNAGGCAGCN
CCGCGGCNGGAAAGATGAAGGGCGGCGCNGGGCGTCGTCCAATTCAAAGGTTGCGTTANC
NTTCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5368#0      TGCTGGTGCGCCCGCCGCGCTCGCCCCGAGAGGACCCTATGGCGACGCAGCTCTCCGCCA 60
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      CCTTCGCCCCTGCCGCGACCACCACCGCCACGCCCCTCCCGGCGCCGCAGCAGCGGCTCC 120
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      GGCACGGCCGCCGCTGCTACCACGCGCTGTCGCTGCGCCCTCCCCGCGCGGCGTCCGGCG 180
consensus_5368#1      -------------------------NTNCGCNTGNCACCCTCCCCGCGCGGCGTCCGGCG 35
                                                    *    * ***********************

consensus_5368#0      ATGACGGCGCCGGCGGCGAGGT-GGAGCCCGCTGCCCCGGCGGCGCCCGCCAAGACGGCC 239
consensus_5368#1      ATGACGGCGCCGGCGGNAAGGTTGGAGCCCGCTGCCCCGGCGGCGCCCGCTAAGACGGCC 95
                      ****************  **** *************************** *********

consensus_5368#0      ACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTCCTGCGCATCAAGTCCCGC 299
consensus_5368#1      ACCGCCACGGACGACGGCGGCGACGACTTCGAGGAGCGCGTNCTGCGCATCAAGTCCCGC 155
                      ***************************************** ******************

consensus_5368#0      GTCGGGCCCAAGAAGCGAGGCAGCGCCGCGGCGCGGAAGAGGAAGGGCGGCGCCGGGGCG 359
consensus_5368#1      GTCGGGCCCAAGAAGCNAGGCAGCNCCGCGGCNGGAAAGATGAAGGGCGGCGCNGGG-CG 214
                      **************** ******* *******  * **** ************ *** **

consensus_5368#0      TCGTCCAAGTCCAAGGCTGCCGTGACGCTCCCGCCCGTGCCGCTGCGGGAGGCCCGGTCT 419
consensus_5368#1      TCGTCCAATTCAAAGGTTGCGTTANCNTTCCCG--------------------------- 247
                      ******** ** **** ***  *  *  *****                           

consensus_5368#0      TCCGTGGGCGTGCCCGTTGAGTTCGGGTTCAGCGCGTACAGCGAGAGGCTCAACGGCGCG 479
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      CTCGCGGCGGTCGGCCTGGCGGCGCTGCTGCTCGTGGAGCTCGGCTCCGGGAAGGCGCTC 539
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      GTCAAGTACCACCAGCCGGCCACGCTGTTCCTCCAGGTGTACACCGTCGCCGCGGCGGGC 599
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      GCCGTGTTCGTCAAGTACGAGAAGGAGCGGATCAGCGTGTGGCCCGGGCCGCCGGCGACC 659
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      AAGCCGCCGGCTACCGGTGAATGATTGGCACATGGGGGTTTCTATTTGACTTTTTTGTAG 719
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      GATATGCTTCTTTTTTTGTAATTTACCCATATACCTCGTTGAGTTACTGTACTTTATCGA 779
consensus_5368#1      ------------------------------------------------------------
                                                                                  

consensus_5368#0      CAAATTGTGTTGTGAAATATTGAA 803
consensus_5368#1      ------------------------