Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5380 cluster # 5380       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5380#0 length = 1286 sequences # 3  
consensusID : consensus_5380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1286
fasta sequence 
                              [ACACAGACTTATAGTAGTTATCCGTTCGACACCTGCAACGATGACGAAGACGAAGAAGTCCAACAACGGCAGTACGATCCTGGTGATCGGCGGCACGGGGATCATCGGGCGGCACATCGTCGCGGCGAGCCTCGACGCCGGCCACCCGACGCTCGTGCTCGTCCGCCCGACTGCCGCATCCGCCGCCGTCGACGTCGACTCCGACAAGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTACGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACGTGGTGATCTCCGCCGTCGGCCACCGTGGGACGGTGGAGCTGGACGGCCAGCTTAAGGTCGTCGAGGCGATCAAGGAGGCCGGAAATGTCAAGCGATTCGTGCCGTCGGAGTACGGATGCGACGTGGAGCAGGCGGAGGAGGGGACGCTGGAGCCGGCGAGGAGCATCATCGCCGCCAAGGTCCGCGTCCGCGAGGCCGTCAGAGCCGCCGGGATCCCCTACACCTTCATCTGCAGCTACTGGGCCCACGGCTTCATGCTCCCCCGCCTCGGCGACCCCCTCGTCGACCGCCCTCCGGCCACCGTCGCCACCGTCTACGGCGACGACACCCAGCGAGCCATCTTCGTGGACGAGAAGGACATGAGCGCGGTGGCGATAAAGGCGGTGGAGGACGAGAGGGCGGCGAACAAGATCCTGTACGTGCGGCCGCCGGCGAACAAGCTGTCGCTGGGCCAGCTCGTCCGTCTCTGGGAGAAGAAGTCCGGCAACACCCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGTGGCCGGGGTGTGCGAGCAGACGATCAACCCGGACGTCGGAGCGGAGGCGACGGAGCTGTACCCGGAGATGGACTTCCTCACCGTCGACAGCTACCTCGACGCCCTCCTCTTGCATGCATGAAGAACTACGTAGTACAGTACGTACCATGCATGTGCAGGGTGTTGGTGTTTTTAGTTGCGCTATATGTGCCATCGCCATCATCACCAGCTAATATATGTATAATACACGTACCAGCATGCAGGGTTTACTCGTACGTACCATAGCAATGTTGTATGTACTACGTACGCATAATGCGCATGGGTGGCACGTCGCATCAGCCTTAATTAAATGGATTTGGTAAATCACAATCGAAAAAATTGCGACCGAAGTCTTATAATAAATTAAT]

[+] EMBL CB618110             [ACACAGACTTATAGTAGTTATCCGTTCGACACCTGCAACGATGACGAAGACGAAGAAGTCCAACAACGGCAGTACGATCCTGGTGATCGGCGGCACGGGGATCATCGGGCGGCACATCGTCGCGGCGAGCCTCGACGCCGGCCACCCGACGCTCGTGCTCGTCCGCCCGACTGCCGCATCCGCCGCCGTCGACGTCGACTCCGACAAGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGGAGCCACCATCGTCTACGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCAGGCGGACGTGGTGATCTCCGCCGTCGGCCACCGTGGGACGGTGGAGCTGGACGGCCAGCTTAAGGTCGTCGAGGCGATCAAGGAGGCCGGAAATGTCAAGCGATTCGTGCCGTCGGAGTACGGATGCGACGTGGAGCAGGCGGAGGAGGGGACGCTGGAGCCGGCGAGGAGCATCATCGCCGCCAAGGTCCGCGTCCGCGAGGCCGTCAGAGCCGCCGGGATCCCCTACACCTTCATCTGCAGCTACTGGGCCCACGGCTTCATGCTCCCCCGCCTCGGCGACCCCCTCGTCGACCGCCCTCCGGCCACCGTCGCCACCGTCTACGGCGACGACACCCAGCGAGCCATCTTCGTGGACGAGAAGGACATGAGCGCGGTGGCGATAAAGGCGGTGGAGGACGAGAGGGCGGCGAACAAGATCCTGTACGTGCGGCCGCCGGCGAACAAGCTGTCGCTGGGCCAGCTCGTCCGTCTCTGGGAGAAGAAGTCCGGCAACACCCTCCAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK110682             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGCCGGCGAACAAGCTGTCGCTGGGCCAGCTCGTCCGTCTCTGGGAGAAGAAGTCCGGCAACACCCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGTGGCCGGGGTGTGCGAGCAGACGATCAACCCGGACGTCGGAGCGGAGGCGACGGAGCTGTACCCGGAGATGGACTTCCTCACCGTCGACAGCTACCTCGACGCCCTCCTCTTGCATGCATGAAGAACTACGTAGTACAGTACGTACCATGCATGTGCAGGGTGTTGGTGTTTTTAGTTGCGCTATATGTGCCATCGCCATCATCACCAGCTAATATATGTATAATACACGTACCAGCATGCAGGGTTTACTCGTACGTACCATAGCAATGTTGTATGTACTACGTACGCATAATGCGCATGGGTGGCACGTCGCATCAGCCTTAATTAAATGGATTTGGTAAATCACAATCGAAAAAATTGCGACCGAAGTCTTATAATAAATTAAT]
[+] EMBL CA999675             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGTGGCCGGGGTGTGCGAGCAGACGATCAACCCGGACGTCGGAGCGGAGGCGACGGAGCTGTACCCGGAGATGGACTTCCTCACCGTCGACAGCTACCTCGACGCCCTCCTCTTGCATGCATGAAGAACTACGTAGTACAGTACGTACCATGCATGTGCAGGGTGTTGGTGTTTTTAGTTGCGCTATATGTGCCATCGCCATCATCACCAGCTAATATATGTATAATACACGTACCAGCATGCAGGGTTTACTCGTACGTACCATAGCAATGTTGTATGTACTACGTACGCATAATGCGCATGGGTGGCACGTCGCATCAGCCTTAATTAAATGGATTTGGTAAATCACAATCGAAAAAAaa                           ]




>consensus_5380#0
ACACAGACTTATAGTAGTTATCCGTTCGACACCTGCAACGATGACGAAGACGAAGAAGTC
CAACAACGGCAGTACGATCCTGGTGATCGGCGGCACGGGGATCATCGGGCGGCACATCGT
CGCGGCGAGCCTCGACGCCGGCCACCCGACGCTCGTGCTCGTCCGCCCGACTGCCGCATC
CGCCGCCGTCGACGTCGACTCCGACAAGGCGAAGCTCCTGGCCTCCCTCGTCGCCAGCGG
AGCCACCATCGTCTACGGCGACATGAACGACCGCGAGAGCTTGGTGGCGGCGATCAGGCA
GGCGGACGTGGTGATCTCCGCCGTCGGCCACCGTGGGACGGTGGAGCTGGACGGCCAGCT
TAAGGTCGTCGAGGCGATCAAGGAGGCCGGAAATGTCAAGCGATTCGTGCCGTCGGAGTA
CGGATGCGACGTGGAGCAGGCGGAGGAGGGGACGCTGGAGCCGGCGAGGAGCATCATCGC
CGCCAAGGTCCGCGTCCGCGAGGCCGTCAGAGCCGCCGGGATCCCCTACACCTTCATCTG
CAGCTACTGGGCCCACGGCTTCATGCTCCCCCGCCTCGGCGACCCCCTCGTCGACCGCCC
TCCGGCCACCGTCGCCACCGTCTACGGCGACGACACCCAGCGAGCCATCTTCGTGGACGA
GAAGGACATGAGCGCGGTGGCGATAAAGGCGGTGGAGGACGAGAGGGCGGCGAACAAGAT
CCTGTACGTGCGGCCGCCGGCGAACAAGCTGTCGCTGGGCCAGCTCGTCCGTCTCTGGGA
GAAGAAGTCCGGCAACACCCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCA
AGTCCAAGAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGT
GGCCGGGGTGTGCGAGCAGACGATCAACCCGGACGTCGGAGCGGAGGCGACGGAGCTGTA
CCCGGAGATGGACTTCCTCACCGTCGACAGCTACCTCGACGCCCTCCTCTTGCATGCATG
AAGAACTACGTAGTACAGTACGTACCATGCATGTGCAGGGTGTTGGTGTTTTTAGTTGCG
CTATATGTGCCATCGCCATCATCACCAGCTAATATATGTATAATACACGTACCAGCATGC
AGGGTTTACTCGTACGTACCATAGCAATGTTGTATGTACTACGTACGCATAATGCGCATG
GGTGGCACGTCGCATCAGCCTTAATTAAATGGATTTGGTAAATCACAATCGAAAAAATTG
CGACCGAAGTCTTATAATAAATTAAT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)