cluster # 5384

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Oryza sativa
cluster # 5384 cluster # 5384 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5384#0 length = 511 sequences # 2

consensus_5384#1 length = 444 sequences # 1

consensusID : consensus_5384#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 511
fasta sequence

                              [CAAACTAATTAATTGCATACAGTAGATTCTATCTTTTTTTTATTGGATGAAAAGATCATGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTAGGAGGTATGAAGTACAGTAAAGGGCTCATATACATAGCTTTCGACAAAAGTTTAACTACAACAAAAATGCATGTGTGGATGCGCATATAGTTGTT-ACAATCACCACGCATGTTCTCTAGTAA-ATAAATGCATTTCAGG-CATGGCATGTTGTAAATCAAGTCCAACTCTAGCGAAACATGTTCCTTTGCTTTCTGGCCGAGATATGATGTCTTTAGTGCATGCATTTTGCTGGCTACTTCTTTCA-TG-TCATTCTTTCGCTCGG-AGC-TGGGTCGTACAGGACAGCGCTACTTGAACAAAATACTAAACATTGGGTGAGCACCGTTTCTGACTCCGTTTTGCTTGAGCAAACTCCTGCATTCTTTGGAGATAAGCATCAATGAATGAAAAATTTCATT]

[+] EMBL CA752595             [CAAACTAATTAATTGCATACAGTAGATTCTATCTTTTTTTTATTGGATGAAAAGATCATGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTAGGAGGTATGAAGTACAGTAAAGGGCTCATATACATAGCTTTCGACAAAAGTTTAACTACAACAAAAATGCATGTGTGGATGCGCATATAGTTGTT ACAATCACCACGCATGTTCTCTAGTAA ATAAATGCATTTCAGG CATGGCATGTTGTAAATCAAGTCCAACTCTAGCGAAACATGTTCCTTTGCTTTCTGGCCGAGATATGATGTCTTTAGTGCATGCATTTTGCTGGCTACTTCTTTCA TG TCATTCTTTCGCTCGG AGC TGGGTCGTACAGGACAGCGCTACTTGAACAAAATACTAAACATTGGGTGAGCACCGTTTCTGACTCCGTTTTGCTTGAGCAAACTCCTGCATTCTTTGGAGATAAGCATCAATGAATGAAAAATTTCATT]
[-] EMBL BI812059             [                                                     tttttttttTAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAG TGCATATCTCTAGGAGGTATGAAGTACAGTAAAGGGCTCATATACATAGCTTTCGACAAAAGTTTAACTACAACAAAAATGCATGTGTGGATGCGCATATAGTTGTTCACAATCACCACGCATGTTCTCTAGTAACATAAATGCATTTCAGGCCATGGCATG TGTAAATC AGTCCAACTCTAGCGAAACATGTTCCTTTGCTTTCTGGCCGAGATATGATGTCTTTAGTG ATGCA TTTG TGGCTACTTCTTTCAGTGTTCATTCTTTCGCTCGGTAGCGTGGTTCGTACAGGACAG GCTACTTGtagca                                                                                                   ]




>consensus_5384#0
CAAACTAATTAATTGCATACAGTAGATTCTATCTTTTTTTTATTGGATGAAAAGATCATG
AATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTAGGAG
GTATGAAGTACAGTAAAGGGCTCATATACATAGCTTTCGACAAAAGTTTAACTACAACAA
AAATGCATGTGTGGATGCGCATATAGTTGTTACAATCACCACGCATGTTCTCTAGTAAAT
AAATGCATTTCAGGCATGGCATGTTGTAAATCAAGTCCAACTCTAGCGAAACATGTTCCT
TTGCTTTCTGGCCGAGATATGATGTCTTTAGTGCATGCATTTTGCTGGCTACTTCTTTCA
TGTCATTCTTTCGCTCGGAGCTGGGTCGTACAGGACAGCGCTACTTGAACAAAATACTAA
ACATTGGGTGAGCACCGTTTCTGACTCCGTTTTGCTTGAGCAAACTCCTGCATTCTTTGG
AGATAAGCATCAATGAATGAAAAATTTCATT

consensusID : consensus_5384#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [TTTTTTTTTTGGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTCAGGCAGGTCATGCAAGTCACCAGTAAAGGGCTCCATATCACCATCAGCTTTCGACAAAAGTTTAACTCACAACAAAAATGCATGTGTGGATGCGCATCATCAGTTGTTACCAATGCGACCCACGCATGTTCTCTAGTAACATCAAATGCCATTTCCAGGCATGGCCATGTTGTCACACATCCAGTCCCAACTCTCAGCGCAAACCATGTTCCCTTTGCTTTCTGGCCCGCAGCATCATGCATGTCTTTAGTGCCATGCATTTTGCGTGGCTCACTTCTTTCCATGTTCATTCTTTCGCTCGAGGTAGCGTGGGTTCGTACAGGGACAGGCGCTACTTGTAGCCAGCAGATACTAAACATTGGGTTGAGCACGTTTT]

[-] EMBL BI812651             [TTTTTTTTTTGGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTCAGGCAGGTCATGCAAGTCACCAGTAAAGGGCTCCATATCACCATCAGCTTTCGACAAAAGTTTAACTCACAACAAAAATGCATGTGTGGATGCGCATCATCAGTTGTTACCAATGCGACCCACGCATGTTCTCTAGTAACATCAAATGCCATTTCCAGGCATGGCCATGTTGTCACACATCCAGTCCCAACTCTCAGCGCAAACCATGTTCCCTTTGCTTTCTGGCCCGCAGCATCATGCATGTCTTTAGTGCCATGCATTTTGCGTGGCTCACTTCTTTCCATGTTCATTCTTTCGCTCGAGGTAGCGTGGGTTCGTACAGGGACAGGCGCTACTTGTAGCCAGCAGATACTAAACATTGGGTTGAGCACGTTTT]




>consensus_5384#1
TTTTTTTTTTGGAATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCA
TATCTCTCAGGCAGGTCATGCAAGTCACCAGTAAAGGGCTCCATATCACCATCAGCTTTC
GACAAAAGTTTAACTCACAACAAAAATGCATGTGTGGATGCGCATCATCAGTTGTTACCA
ATGCGACCCACGCATGTTCTCTAGTAACATCAAATGCCATTTCCAGGCATGGCCATGTTG
TCACACATCCAGTCCCAACTCTCAGCGCAAACCATGTTCCCTTTGCTTTCTGGCCCGCAG
CATCATGCATGTCTTTAGTGCCATGCATTTTGCGTGGCTCACTTCTTTCCATGTTCATTC
TTTCGCTCGAGGTAGCGTGGGTTCGTACAGGGACAGGCGCTACTTGTAGCCAGCAGATAC
TAAACATTGGGTTGAGCACGTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5384#0      CAAACTAATTAATTGCATACAGTAGATTCTATCTTTTTTTTATTGGATGAAAAGATCATG 60
consensus_5384#1      ----------------------------------TTTTTTTTTTGGA------------- 13
                                                        ******* *****             

consensus_5384#0      AATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTAGG-- 118
consensus_5384#1      -ATAATCAACGGCTAGATTTTATTATGCGCTCTTACGTGCTAGTTGCATATCTCTCAGGC 72
                       ******************************************************  *  

consensus_5384#0      AGGT-ATG-AAGTA--CAGTAAAGGGCTC-ATATA--CAT-AGCTTTCGACAAAAGTTTA 170
consensus_5384#1      AGGTCATGCAAGTCACCAGTAAAGGGCTCCATATCACCATCAGCTTTCGACAAAAGTTTA 132
                      **** *** ****   ************* ****   *** *******************

consensus_5384#0      ACT-ACAACAAAAATGCATGTGTGGATGCGCATA--TAGTTGTTACAATCAC----CACG 223
consensus_5384#1      ACTCACAACAAAAATGCATGTGTGGATGCGCATCATCAGTTGTTACCAATGCGACCCACG 192
                      *** *****************************    ********* *   *    ****

consensus_5384#0      CATGTTCTCTAGTAAA--TAAATGCA--TTTCAGGCATGGC-ATGTTGTAA---ATCAAG 275
consensus_5384#1      CATGTTCTCTAGTAACATCAAATGCCATTTCCAGGCATGGCCATGTTGTCACACATCCAG 252
                      ***************    ******   ** ********** ******* *   *** **

consensus_5384#0      TCC-AACTCTA---GCGAAACATGTTCC-TTTGCTTTCTGGCCGAGA----TATG-ATGT 325
consensus_5384#1      TCCCAACTCTCAGCGCAAACCATGTTCCCTTTGCTTTCTGGCCCGCAGCATCATGCATGT 312
                      *** ******    ** ** ******** **************   *     *** ****

consensus_5384#0      CTTTAGTGC-ATGCATTTTGC-TGGCT-ACTTCTTTC-ATGT-CATTCTTTCGCTCGGAG 380
consensus_5384#1      CTTTAGTGCCATGCATTTTGCGTGGCTCACTTCTTTCCATGTTCATTCTTTCGCTCGAGG 372
                      ********* *********** ***** ********* **** **************  *

consensus_5384#0      C----TGGGT-CGTACAGG-ACAG-CGCTACTTGAA--CA--AAATACTAAACATTGGGT 429
consensus_5384#1      TAGCGTGGGTTCGTACAGGGACAGGCGCTACTTGTAGCCAGCAGATACTAAACATTGGGT 432
                           ***** ******** **** ********* *  **  * ****************

consensus_5384#0      -GAGCACCGTTTCTGACTCCGTTTTGCTTGAGCAAACTCCTGCATTCTTTGGAGATAAGC 488
consensus_5384#1      TGAGCACGTTTT------------------------------------------------ 444
                       ******  ***                                                

consensus_5384#0      ATCAATGAATGAAAAATTTCATT 511
consensus_5384#1      -----------------------