cluster # 5392

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Oryza sativa
cluster # 5392 cluster # 5392 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5392#0 length = 600 sequences # 2

consensus_5392#1 length = 529 sequences # 1

consensusID : consensus_5392#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 600
fasta sequence

                              [CGTTCGTCACGTCGGTTGGCACCCTCCCCGCGCCGCGACACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATC-TGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTCATGTCCTGGTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATGC]

[+] EMBL AK105185             [CGTTCGTCACGTCGGTTGGCACCCTCCCCGCGCCGCGACACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATC TGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTCATGTCCTGGTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATGC]
[+] EMBL AU091685             [                                                                                          CGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATCTTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCG CTCGTCGTCGGATG CATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAG TTCTTNGAAATTTGGCATGGATTCAAGTCCTTGCTgcnaa                                                                                           ]




>consensus_5392#0
CGTTCGTCACGTCGGTTGGCACCCTCCCCGCGCCGCGACACGACGCCCGACTCCGACTCG
CCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAG
CGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGA
GAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCT
CGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTC
CTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGCT
CGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACA
TCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAAT
TTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTCATGTCCTG
GTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATGC

consensusID : consensus_5392#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [GCCGCGACGACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCAAAANANANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA757622             [GCCGCGACGACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCAAAANANANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_5392#1
GCCGCGACGACGACGCCCGACTCCGACTCGCCGCCGGCTTCTCCCCTTCGCCATCTCTCT
CGCGATCTCGCCGCGCCCTCGCCGGAGGAGCGAGGAGGAGATGGAGGCGACCAAGACGCG
CGGCACCGGCAATGCGGCTGCGGCGGCGGAGAAGAGGAGGGGGCACGGATCGACGGCGCT
GTTCGTGGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGT
CGTCTCCCACCTCCTCCCCTCCGTCGCCTCCTCCTAGATCTGCTCTGTTTTCCCTGTTTT
TGTTATGTTTCTTTTTTTTTTCGTTTGCTCGATCGGATCCGACGCGGGTGACGTCACTTC
AGATCGCCTCGTCGTCGGATGCCATGACATCTCCGATGTGTAATTCCGTGTAATGGGATG
AGAAACCAGAGCTGCAGTTTCTTGGAAATTTGGCATGGATTTCAGTTCTTGCTTGCTTGC
TCAAAANANANAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5392#0      CGTTCGTCACGTCGGTTGGCACCCTCCCCGCGCCGCGAC-ACGACGCCCGACTCCGACTC 59
consensus_5392#1      -------------------------------GCCGCGACGACGACGCCCGACTCCGACTC 29
                                                     ******** ********************

consensus_5392#0      GCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGA 119
consensus_5392#1      GCCGCCGGCTTCTCCCCTTCGCCATCTCTCTCGCGATCTCGCCGCGCCCTCGCCGGAGGA 89
                      ************************************************************

consensus_5392#0      GCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGG 179
consensus_5392#1      GCGAGGAGGAGATGGAGGCGACCAAGACGCGCGGCACCGGCAATGCGGCTGCGGCGGCGG 149
                      ************************************************************

consensus_5392#0      AGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGC 239
consensus_5392#1      AGAAGAGGAGGGGGCACGGATCGACGGCGCTGTTCGTGGCGGTGGACTACGCCTTCCTGC 209
                      ************************************************************

consensus_5392#0      TCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCT 299
consensus_5392#1      TCGCCTTCGCCGGGTTCCTCTCCTACCTCGTCGTCTCCCACCTCCTCCCCTCCGTCGCCT 269
                      ************************************************************

consensus_5392#0      CCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTTTCGTTTGC 359
consensus_5392#1      CCTCCTAGATCTGCTCTGTTTTCCCTGTTTTTGTTATGTTTCTTTTTTTTTT-CGTTTGC 328
                      **************************************************** *******

consensus_5392#0      TCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGAC 419
consensus_5392#1      TCGATCGGATCCGACGCGGGTGACGTCACTTCAGATCGCCTCGTCGTCGGATGCCATGAC 388
                      ************************************************************

consensus_5392#0      ATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAA 479
consensus_5392#1      ATCTCCGATGTGTAATTCCGTGTAATGGGATGAGAAACCAGAGCTGCAGTTTCTTGGAAA 448
                      ************************************************************

consensus_5392#0      TTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCATTTGTTCTTCAATTGTTCATGTCCT 539
consensus_5392#1      TTTGGCATGGATTTCAGTTCTTGCTTGCTTGCTCAA--AANANANAANNNNNNNNNNNNN 506
                      ***********************************          **             

consensus_5392#0      GGTCCCGATTGGTTGGCCTCTGGATCTGATACTGTTCTTGTCAATGCAAATTTCTGAATG 599
consensus_5392#1      NNNNNNNNNNNNNNNNNNNNNNN------------------------------------- 529
                                                                                  

consensus_5392#0      C 600
consensus_5392#1      -