cluster # 5400

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Oryza sativa
cluster # 5400 cluster # 5400 Sequences # 3 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5400#0 length = 1976 sequences # 3
consensusID : consensus_5400#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1976
fasta sequence
                              [TCCAGAGATTATGTGCATCATGCAAATTAGTTTTGTTCTGTGCAGTAAGCTTATGGTTGTTCTGATTAAAGGATTCAATTCAACCCTGCGGCAAGGAAATGTTACTCATCATGAATATATACAGCTGGGTAAAGGACGTGATGTTGGAATGAATCAAATATCCAACTTTGAGGCCAAGGTGGCAAACGGAAATGGTGAACAAACACTCTGTCGAGATATTTATCGACTAGGGCACAGATTTGATTTCTACAGGATGTTGTCTCTATACTTCACTACAGTTGGTTTCTACTTCAATAGTATGGTGGCTGTTCTTACAGTGTATGTATTTTTATACGGGAGGTTATATCTTGTTTTGAGTGGCCTAGAGAAGTCAATTCTCCAGGATCCACAAATTAAGAACATCAAGCCCTTTGAAAATGCACTTGCAACTCAATCTATTTTCCAACTTGGAATGTTGCTCGTCCTCCCTATGATGATAGAGGTTGGCTTGGAGAAAGGATTTGGCAGAGCCTTGGGAGAGTTTGTAATAATGCAACTTCAATTAGCTTCTGTTTTCTTCACTTTCCATCTTGGAACGAAGACTCACTACTATGGAAGAACAATACTTCATGGTGGTGCAAAATATAGAGGTACAGGCCGGGGGTTTGTTGTGCGCCATGCAAAGTTTGCTGAGAATTACCGGATGTATTCCCGGAGCCACTTTGTGAAAGCACTGGAGCTACTCATTCTTTTGGTTGTCTATCTAGCTTATGGCATTTCGTACAGGAGCTCAAGTTTGTATCTATATGTCACAATTTCAATATGGTTCCTTGTTTTCTGTTGGCTGTTTGCACCTTTTGTCTTCAATCCATCATGCTTTGAGTGGCACAAGACTGTTGATGACTGGACTGACTGGTGGCATTGGATGAGCAATAGAGGAGGTATTGGCCTGGCACCAGAGCAAAGTTGGGAGGCTTGGTGGATAAGTGAACATGACCACCTGAGGAATGGTACAATACGTAGCCTGCTGTTGGAGTTCGTCCTCTCCCTTCGCTTCTTGATATACCAATATGGTATTGTTTATCATTTACACATAGTGCATGGGAACAGAAGCTTCATGGTGTATGCACTATCATGGCTGGTTATAGCTATAGTTCTT-GT-ATCACTTAAGGTCGTCTCAATGGGGAGAGAGAAGTTTATTACCAATTTTCAACTTGTATTCCGTATCCTCAAGGGCATTGTCTTTATTGTCCTCATCAGCTTGGTGGTCATATTATTTGTTGTTTTCAATCTGACTGTCTCTGATGTTGGTGCCAGTATTTTGGCATTCATCCCTACTGGCTGGTTTATTCTTCAGATTGCACAGCTCTGTGGACCATTGTTCCGGAGATTGGTGACGGAGCCGCTCTGCGCCCTGTTCTGTTCATGTTGCACCGGGGGCACCGCATGCAAGGGGCGTTGCTGCGCCAGGTTTAGGCTGAGGAGCCGGGATGTGCTCCGCAAGATCGGGCCATGGGACTCCATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCATCGCCGT-CCTGTCGT-GGTTCCCCTTCGTCTCCGAGTTTCAGACTCGGCTGCTCTTCAGCCAGGCCTTCAGCCGGGGGCT-GCAGATCTCCAGGATCCTCACCGGCCAGAATGGTAGCGGCTCAAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTACAATCCGATGTAACTTTTCCTGGCACCGATATGGCGGTTCTGGGATTTATTTGTTTCTGGTTCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTATTGCTTGGTTGCAGTGTTTGGGGAACAAAAAAACAATGAGAATGACGACCAGGATTTTCTATACCAAGGAATTTCATTTTCAGAGCCCAGTTGCTTCCNCCAATAATATTCTGTTTTATCTAAAAAA]

[+] EMBL AK064446             [TCCAGAGATTATGTGCATCATGCAAATTAGTTTTGTTCTGTGCAGTAAGCTTATGGTTGTTCTGATTAAAGGATTCAATTCAACCCTGCGGCAAGGAAATGTTACTCATCATGAATATATACAGCTGGGTAAAGGACGTGATGTTGGAATGAATCAAATATCCAACTTTGAGGCCAAGGTGGCAAACGGAAATGGTGAACAAACACTCTGTCGAGATATTTATCGACTAGGGCACAGATTTGATTTCTACAGGATGTTGTCTCTATACTTCACTACAGTTGGTTTCTACTTCAATAGTATGGTGGCTGTTCTTACAGTGTATGTATTTTTATACGGGAGGTTATATCTTGTTTTGAGTGGCCTAGAGAAGTCAATTCTCCAGGATCCACAAATTAAGAACATCAAGCCCTTTGAAAATGCACTTGCAACTCAATCTATTTTCCAACTTGGAATGTTGCTCGTCCTCCCTATGATGATAGAGGTTGGCTTGGAGAAAGGATTTGGCAGAGCCTTGGGAGAGTTTGTAATAATGCAACTTCAATTAGCTTCTGTTTTCTTCACTTTCCATCTTGGAACGAAGACTCACTACTATGGAAGAACAATACTTCATGGTGGTGCAAAATATAGAGGTACAGGCCGGGGGTTTGTTGTGCGCCATGCAAAGTTTGCTGAGAATTACCGGATGTATTCCCGGAGCCACTTTGTGAAAGCACTGGAGCTACTCATTCTTTTGGTTGTCTATCTAGCTTATGGCATTTCGTACAGGAGCTCAAGTTTGTATCTATATGTCACAATTTCAATATGGTTCCTTGTTTTCTGTTGGCTGTTTGCACCTTTTGTCTTCAATCCATCATGCTTTGAGTGGCACAAGACTGTTGATGACTGGACTGACTGGTGGCATTGGATGAGCAATAGAGGAGGTATTGGCCTGGCACCAGAGCAAAGTTGGGAGGCTTGGTGGATAAGTGAACATGACCACCTGAGGAATGGTACAATACGTAGCCTGCTGTTGGAGTTCGTCCTCTCCCTTCGCTTCTTGATATACCAATATGGTATTGTTTATCATTTACACATAGTGCATGGGAACAGAAGCTTCATGGTGTATGCACTATCATGGCTGGTTATAGCTATAGTTCTT GT ATCACTTAAGGTCGTCTCAATGGGGAGAGAGAAGTTTATTACCAATTTTCAACTTGTATTCCGTATCCTCAAGGGCATTGTCTTTATTGTCCTCATCAGCTTGGTGGTCATATTATTTGTTGTTTTCAATCTGACTGTCTCTGATGTTGGTGCCAGTATTTTGGCATTCATCCCTACTGGCTGGTTTATTCTTCAGATTGCACAGCTCTGTGGACCATTGTTCCGGAGATTGGTGACGGAGCCGCTCTGCGCCCTGTTCTGTTCATGTTGCACCGGGGGCACCGCATGCAAGGGGCGTTGCTGCGCCAGGTTTAGGCTGAGGAGCCGGGATGTGCTCCGCAAGATCGGGCCATGGGACTCCATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCATCGCCGT CCTGTCGT GGTTCCCCTTCGTCTCCGAGTTTCAGACTCGGCTGCTCTTCAGCCAGGCCTTCAGCCGGGGGCT GCAGATCTCCAGGATCCTCACCGGCCAGAATGGTAGCGGCTCAAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTACAATCCGATGTAACTTTTCCTGGCACCGATATGGCGGTTCTGGGATTTATTTGTTTCTGGTTCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTATTGCTTGGTTGCAGTGTTTGGGGAACAAAAAAACAATGAGAATGACGACCAGGAT                                                                        ]
[+] EMBL AA751360             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAGTTCATCCTCTCCCTTCGCTTCTTGATATA CAATATGGTATTGTTTATCATTTACACATAGTGCATCGGAACAGAAGCTTCATGGTGTAT NACTATCATGGCTGGTTATAGCTATAGTTCTTCGTCATCACTTca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BQ906161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATGCAAGGGGCGTTGCTGCGCCAGGTTTA GCTGAGGAGCCGGGATGTGCTCCGCAAGATC GGCCAT GGACTCCATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCATC CCGTCCCTGTCGTGGGTTCCCCTTCNTTTCCGAGTTCCAGACTC GCTGCTCTTCAACCAAGCCTTCA CCCGGGGCTCGCAGATCTCCAGGATCCTCGCCGCCCAGAATGGTAGCGGCTCAAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTACAATCCGATGTAACTTTTCCTGGCACCGATATGCCGGTTCTGGGATTAATTTGTTTCTGGTTCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTA TGCTT GTTCCAGT TTTGGGG   AAAAAACCAATGAGAATGNCGACCAGGATTTTCTATACCAAGGAATTTCATTTTCAGAGCCCAGTTGCTTCCNCCAATAATATTCTGTTTTATCTAAAAAA]




>consensus_5400#0
TCCAGAGATTATGTGCATCATGCAAATTAGTTTTGTTCTGTGCAGTAAGCTTATGGTTGT
TCTGATTAAAGGATTCAATTCAACCCTGCGGCAAGGAAATGTTACTCATCATGAATATAT
ACAGCTGGGTAAAGGACGTGATGTTGGAATGAATCAAATATCCAACTTTGAGGCCAAGGT
GGCAAACGGAAATGGTGAACAAACACTCTGTCGAGATATTTATCGACTAGGGCACAGATT
TGATTTCTACAGGATGTTGTCTCTATACTTCACTACAGTTGGTTTCTACTTCAATAGTAT
GGTGGCTGTTCTTACAGTGTATGTATTTTTATACGGGAGGTTATATCTTGTTTTGAGTGG
CCTAGAGAAGTCAATTCTCCAGGATCCACAAATTAAGAACATCAAGCCCTTTGAAAATGC
ACTTGCAACTCAATCTATTTTCCAACTTGGAATGTTGCTCGTCCTCCCTATGATGATAGA
GGTTGGCTTGGAGAAAGGATTTGGCAGAGCCTTGGGAGAGTTTGTAATAATGCAACTTCA
ATTAGCTTCTGTTTTCTTCACTTTCCATCTTGGAACGAAGACTCACTACTATGGAAGAAC
AATACTTCATGGTGGTGCAAAATATAGAGGTACAGGCCGGGGGTTTGTTGTGCGCCATGC
AAAGTTTGCTGAGAATTACCGGATGTATTCCCGGAGCCACTTTGTGAAAGCACTGGAGCT
ACTCATTCTTTTGGTTGTCTATCTAGCTTATGGCATTTCGTACAGGAGCTCAAGTTTGTA
TCTATATGTCACAATTTCAATATGGTTCCTTGTTTTCTGTTGGCTGTTTGCACCTTTTGT
CTTCAATCCATCATGCTTTGAGTGGCACAAGACTGTTGATGACTGGACTGACTGGTGGCA
TTGGATGAGCAATAGAGGAGGTATTGGCCTGGCACCAGAGCAAAGTTGGGAGGCTTGGTG
GATAAGTGAACATGACCACCTGAGGAATGGTACAATACGTAGCCTGCTGTTGGAGTTCGT
CCTCTCCCTTCGCTTCTTGATATACCAATATGGTATTGTTTATCATTTACACATAGTGCA
TGGGAACAGAAGCTTCATGGTGTATGCACTATCATGGCTGGTTATAGCTATAGTTCTTGT
ATCACTTAAGGTCGTCTCAATGGGGAGAGAGAAGTTTATTACCAATTTTCAACTTGTATT
CCGTATCCTCAAGGGCATTGTCTTTATTGTCCTCATCAGCTTGGTGGTCATATTATTTGT
TGTTTTCAATCTGACTGTCTCTGATGTTGGTGCCAGTATTTTGGCATTCATCCCTACTGG
CTGGTTTATTCTTCAGATTGCACAGCTCTGTGGACCATTGTTCCGGAGATTGGTGACGGA
GCCGCTCTGCGCCCTGTTCTGTTCATGTTGCACCGGGGGCACCGCATGCAAGGGGCGTTG
CTGCGCCAGGTTTAGGCTGAGGAGCCGGGATGTGCTCCGCAAGATCGGGCCATGGGACTC
CATCCAGGAGATGGCGAGGATGTACGAGTACACCATGGGGATCCTCATCTTCTTCCCCAT
CGCCGTCCTGTCGTGGTTCCCCTTCGTCTCCGAGTTTCAGACTCGGCTGCTCTTCAGCCA
GGCCTTCAGCCGGGGGCTGCAGATCTCCAGGATCCTCACCGGCCAGAATGGTAGCGGCTC
AAAGAGGGACTGATCATGATGAATATATGGGTTGTGCTTCTCTGCAGGTTTGACTAGTAC
AATCCGATGTAACTTTTCCTGGCACCGATATGGCGGTTCTGGGATTTATTTGTTTCTGGT
TCCATCGTGTTCATATGAGGGCATGTGTGTAGTAGCCCCTATTGTTTTATTGCTTGGTTG
CAGTGTTTGGGGAACAAAAAAACAATGAGAATGACGACCAGGATTTTCTATACCAAGGAA
TTTCATTTTCAGAGCCCAGTTGCTTCCNCCAATAATATTCTGTTTTATCTAAAAAA
clustalw multiple alignements is not computed in this case