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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1192 fasta sequence
[GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCACCGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGGCCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGTCGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTATCTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCACTGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCGCTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGAGTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTTTGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCTTGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTGGGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTTTGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTA]
[+] EMBL AK067851 [GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCACCGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGGCCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGTCGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTATCTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCACTGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCGCTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGAGTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTTTGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCTTGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTGGGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTTTGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGACACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATACGTGTGTTAATTA]
consensusID : consensus_5401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence
[AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTGAGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCTTTGCAAACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTGCTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAGTGGGCTTCGTGGGATGTGAAAATTGATTCCTACACATTGACATTTGAACACAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGGGCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACATCGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACAACTCTGGTATC]
[+] EMBL CB000194 [AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCTTTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTGAGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTGGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCTTTGCAAACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGCAACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTGCTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAGTGGGCTTCGTGGGATGTGAAAATTGATTCCTACACATTGACATTTGAACACAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGGGCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACATCGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACAACTCTGGTATC]
consensusID : consensus_5401#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[TATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGGCACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTATTTGCAGGGTCCAGTCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACATTATATATACGTGTGTTAATTAAGTAATNAGAAGTTTAGCTTGTGAAGT]
[-] EMBL CB483496 [TATGGGTGGGGTACACCTAATCACATCATACCATTCACTTATGCAGACTACATGGCAGTCGCAGTGCTTGGTGCTCCACCAATGCCAAAGAAAGGGACCCGGATTATGGCACAGTGTGTGGAGAACAAGTGTATCAAGGAGTTCCAAGATGAGATGAAGGCCTTCATATAATATATATTATATGTGTATTTGCAGGGTCCAGTCAATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACATTATATATACGTGTGTTAATTAAGTAATNAGAAGTTTAGCTTGTGAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5401#0 GGCGTTCGCCGGCCGATTCGTCGGCTCCCTGCTGGCCGGCGACGCCTGCGTCGCGTGCAC 60
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 CGGCGAGGGCGCGTGGTTCGTGGAGGCAGCCGCGGACTGCAGCCTCGACGACGTGAACGG 120
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 CCTCGAGTACCCGCTCATGATCTCCGAGGAGGAGCTGCTGCCTGCCCCCGAGGACGGCGT 180
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 CGACCCTACCAGTATTCCAGTCATGATGCAGGTGACTGAATTCACTTGTGGAGGATTTAT 240
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 CTTGGGCCTTGTGGCAGTCCACACCCTTGCTGATGGACTTGGAGCAGCACAATTCATCAC 300
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 TGCAGTAGCTGAATTGGCCCGTGGCATGGACAAGCTCAGGGTGGCTCCCGTGTGGGATCG 360
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 CTCGCTGATACCGAACCCACCTAAGCTCCCTCCTGGGCCACCACCATCGTTCCAGTCCTT 420
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 TGGTTTTCAGCATTTCTCCACAGATGTCACCTCTGACCGTATAGCTCACGTGAAGGCTGA 480
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 GTACTTCCAGACCTTTGGCCAGTATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTTG 540
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 GCAGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGTCCATGTGTGTTTCTT 600
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 TGCAAACACGCGTCACCTGCTCACGCAGGTTCTCCCAAAAGATGGGGGCTACTATGGCAA 660
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 ------------------------------------------------------------
consensus_5401#0 CTGCTTTTATCCAGTGACTGTGACAGCAATAGCTGAGGATGTTGCCACCAAAGAGTTGCT 720
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 -------------------------AGGCCTTCTTGGGCCACCACCATCGTTCCAGTCCT 35
consensus_5401#0 TGATGTGATCAAGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTTTGCAAAGTG 780
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 TTGGTTTTCCCTATTTCTCCACAGATGTCACCTCTGACCGCATAGCTCACGTGAAGGCTG 95
consensus_5401#0 GGCTTCAGGGGATGTGAAAGTTGATCCCTACGCATTGACATTTGAACACAATGTGCTTTT 840
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 AGAACTTCCATACCTTTGGCCAATATTGTTCCACCTTTGATGTTGCTACTGCTAAGGTTT 155
consensus_5401#0 TGTGTCTGATTGGACGAGGTTAGGATTCTTCGAGGTAGACTATGGGTGGGGTACACCTAA 900
consensus_5401#2 ----------------------------------------TATGGGTGGGGTACACCTAA 20
consensus_5401#1 GGCGGGCCAGGACACGGGCCGTCGGGTACAAACCGGAGATCCAGGGCCATGTGTGTTTCT 215
*** ** *
consensus_5401#0 TCACATCATACCATTCACTTATGCAGACT------------ACATGGCAGTCGCAGTGCT 948
consensus_5401#2 TCACATCATACCATTCACTTATGCAGACT------------ACATGGCAGTCGCAGTGCT 68
consensus_5401#1 TTGCAA-ACACGCTTCACCTGCTCACGCTCGTTCTCCCAAAAGATGGGGGCTACTATGGC 274
* ** * ** ***** * ** ** * **** * * **
consensus_5401#0 TGGTGCTCCA--CCAATGCCAAAGAAAGGGAC-CCGGATTATGACACAGTGTGTGGAGAA 1005
consensus_5401#2 TGGTGCTCCA--CCAATGCCAAAGAAAGGGAC-CCGGATTATGGCACAGTGTGTGGAGAA 125
consensus_5401#1 AACTGCTTTTATCCATTGACTGTGACAGCTATACCTGATGATGTTGCCACCTAAGAGTTG 334
**** *** ** * ** ** * ** *** *** * * *
consensus_5401#0 CAAG-TGT-ATCAAGGAGTTCCAAGATG---AGATGAAGGCCTTCATATAATATATATTA 1060
consensus_5401#2 CAAG-TGT-ATCAAGGAGTTCCAAGATG---AGATGAAGGCCTTCATATAATATATATTA 180
consensus_5401#1 CTTGATGTGATCATGATAATTCGGGATGGAAAGGCGAGGCTCCCCATGGAGTATGCAAAG 394
* * *** **** * * * **** ** ** * * *** * *** *
consensus_5401#0 TATGTGTAGTAGGTTGGAATAAATTTGCTATTTATGAGTAGTATTTGCAGGGTCCAATCA 1120
consensus_5401#2 TATGTGTA-----------------------------------TTTGCAGGGTCCAGTCA 205
consensus_5401#1 TGGGCTTCGTGGGATGTGAAAATTGATTCCTAC----------ACATTGACATTTGAACA 444
* * * * **
consensus_5401#0 ATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACAATTATATATAC 1180
consensus_5401#2 ATACCATGCTTGTTGTATTGTGTTAAATACATGATATATGACCTGGACA-TTATATATAC 264
consensus_5401#1 CAATGATGCTTTTTGTGTCTGATTGGACATAGGATATAGATTCTTCGAGGTAGACTATGG 504
* ****** **** * ** * * * ****** ** * ***
consensus_5401#0 GTGTGTTAA--TTA---------------------------------------------- 1192
consensus_5401#2 GTGTGTTAA--TTAAGTA-ATNAGAA-GTTTAGCTTGTGAAGT----------------- 303
consensus_5401#1 GCGGGGTACACCTAAGCACATCATACCATATCACTTATGCTCACTACATGGCAATCACAT 564
* * * ** **
consensus_5401#0 ------------------------------------------------------------
consensus_5401#2 ------------------------------------------------------------
consensus_5401#1 CGCTTGGTGCTCCATCCCTGTGAATTATCTGGACCCCGATTATGACGCACTGCGCGGACA 624
consensus_5401#0 -----------
consensus_5401#2 -----------
consensus_5401#1 ACTCTGGTATC 635
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||