cluster # 5404

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Oryza sativa
cluster # 5404 cluster # 5404 Sequences # 3 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5404#0 length = 870 sequences # 3

consensusID : consensus_5404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 870
fasta sequence

                              [GAAGAGACTAGTAGTAGAGGAGAGAGAAACTAAACCCTCCCCCTCCCCTCGATCTCTTCATATGGTTGAGACTACGGCGACGGCGGGCGGCGGGCGCGCGCT-CCTCCTCCGCATCCCTCTCGCTCCTACCTTACCCCTCGCCGCCACTCCCCCTCCTCCTCCTCCTCTCCCTGGCGGCGCCACCCGTTTCTCTAATGCCGTCTTCTCCTCCTCCCCCCTTCCCTCCGTCCTCGATGACGACGGATGACGGCGACCACCGTGGCCAAGAGTAGCGAGGAGGTGCCCCCGGCGAGAGGGCTTCCTCTGTATCTTCACCCGCCGTTTCCACATGGCCCAGAGCGCAAAGGAGAGGGGGCCGGGCTAGGGTGCGGAGGCAGGGCGGCGCACGACGATAGGTACATTGTCTTCTCTCCTATACTACGTCTCATCTTGTCAGTCGTCACGTTCTTGTTCTCGATCCGAG-TTTTTGGTTCGCAGGATTTTGCATTTTTCTTTTCAGTT--CGGCTCCCGATGT-GGTGTTCGGTC-GGGGTGC-TTCATCGATGGACCGCCACCCGCCGCTTGCCATCTCCCCGTGGAGGCTCCGTCCACGCTCGCTGCTCGCCGTTTAGGAATTTGGTTGAGATGAGCGGATCCATGTTTCTTTTCTTCCCTAGCGGTTGTTCTTGATGTGCTAGTTTTTTCTTGTATAAATCCTAAGGAATTACCTAAGGAATGGTTGATTATATTGGTTGTTGTGCGATGCATCGATGCATATCTTTTTAGGTATTTAGGGATGGATTGTTTGGTCCGATACAAGCAGCAAAAAAAAAACAATGAAAAAAAGAAATAAAAAGACCTTTAGTTTCGGATTGAATGTTCCGGTTTAAAAAA]

[+] EMBL AK109701             [GAAGAGACTAGTAGTAGAGGAGAGAGAAACTAAACCCTCCCCCTCCCCTCGATCTCTTCATATGGTTGAGACTACGGCGACGGCGGGCGGCGGGCGCGCGCT CCTCCTCCGCATCCCTCTCGCTCCTACCTTACCCCTCGCCGCCACTCCCCCTCCTCCTCCTCCTCTCCCTGGCGGCGCCACCCGTTTCTCTAATGCCGTCTTCTCCTCCTCCCCCCTTCCCTCCGTCCTCGATGACGACGGATGACGGCGACCACCGTGGCCAAGAGTAGCGAGGAGGTGCCCCCGGCGAGAGGGCTTCCTCTGTATCTTCACCCGCCGTTTCCACATGGCCCAGAGCGCAAAGGAGAGGGGGCCGGGCTAGGGTGCGGAGGCAGGGCGGCGCACGACGATAGGTACATTGTCTTCTCTCCTATACTACGTCTCATCTTGTCAGTCGTCACGTTCTTGTTCTCGATCCGAG TTTTTGGTTCGCAGGATTTTGCATTTTTCTTTTCAGTT  CGGCTCCCGATGT GGTGTTCGGTC GGGGTGC TTCATCGATGGACCGCCACCCGCCGCTTGCCATCTCCCCGTGGAGGCTCCGTCCACGCTCGCTGCTCGCCGTTTAGGAATTTGGTTGAGATGAGCGGATCCATGTTTCTTTTCTTCCCTAGCGGTTGTTCTTGATGTGCTAGTTTTTTCTTGTATAAATCCTAAGGAA                                                                                                                                                                          ]
[+] EMBL OSC8771              [                                                                                 GGCGGGCGGCGGGCGCGCGCTACCTCCTCCGCATCCCTCTCGCTCCTACCTTACCCCTCGCCGCCACTCCCCCTCCTCCTCCTCCTCTCCCTGGCGGCG CACCCGTTTCTCTAATGCCGTCTTCTCCTCCTCCCCCCTTCCCTCCGTCCTCGATGACGACGGATGACGGCGACCACCGTGGCCAAGAGTAGCGAGGAGGTGCCCCCGGCGAGAGGGCTTCCTCTGTATCTTCACCCGCCGTTTCCACATGGCCCAGAGCGCAAAGGAGAGGGGGCCGGGCTAGGGTGCGGAGGGAAGNAGGCG ACGACGATAGGTACATTGTCTTCTCTCCTATACTACGTCTTATCTTGTCAGTCGT ANGGTCTTGTTCTTGATCCGAGTTTTTTGGTTCGAAGGATTTTGNA TTTTCTTTTTANTTTGGGGTTCCCGATGTGGGTNTTGGGTCGGGGGTGCTTTAATCGA                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU174108             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCACGTTCTTGTTCTCGATCCGAG TTTTTGGTTCGCAGGATTTTGCATTTTTCTTTTCAGTT  CGGCTCCCGATGT GGTGTTCGGTC GGGGTGC TTCATCGATGGACCGCCACCCGCCGCTTGCCATCTCCCCGTGGAGGCTCCGTCCACGCTCGCTGCTCGCCGTTTAGGAATTTGGTTGAGATGAGCGGATCCATGTTTCTTTTCTTCCCTAGCGGTTGTTCTTGATGTGCTAGTTTTTTCTTGTATAAATCCTAAGGAATTACCTAAGGAATGGTTGATTATATTGGTTGTTGTGCGATGCATCGATGCATATCTTTTTAGGTATTTAGGGATGGATTGTTTGGTCCGATACAAGCAGCAAAAAAAAAACAATGAAAAAAAGAAATAAAAAGACCTTTAGTTTCGGATTGAATGTTCCGGTTTAAAAAA]




>consensus_5404#0
GAAGAGACTAGTAGTAGAGGAGAGAGAAACTAAACCCTCCCCCTCCCCTCGATCTCTTCA
TATGGTTGAGACTACGGCGACGGCGGGCGGCGGGCGCGCGCTCCTCCTCCGCATCCCTCT
CGCTCCTACCTTACCCCTCGCCGCCACTCCCCCTCCTCCTCCTCCTCTCCCTGGCGGCGC
CACCCGTTTCTCTAATGCCGTCTTCTCCTCCTCCCCCCTTCCCTCCGTCCTCGATGACGA
CGGATGACGGCGACCACCGTGGCCAAGAGTAGCGAGGAGGTGCCCCCGGCGAGAGGGCTT
CCTCTGTATCTTCACCCGCCGTTTCCACATGGCCCAGAGCGCAAAGGAGAGGGGGCCGGG
CTAGGGTGCGGAGGCAGGGCGGCGCACGACGATAGGTACATTGTCTTCTCTCCTATACTA
CGTCTCATCTTGTCAGTCGTCACGTTCTTGTTCTCGATCCGAGTTTTTGGTTCGCAGGAT
TTTGCATTTTTCTTTTCAGTTCGGCTCCCGATGTGGTGTTCGGTCGGGGTGCTTCATCGA
TGGACCGCCACCCGCCGCTTGCCATCTCCCCGTGGAGGCTCCGTCCACGCTCGCTGCTCG
CCGTTTAGGAATTTGGTTGAGATGAGCGGATCCATGTTTCTTTTCTTCCCTAGCGGTTGT
TCTTGATGTGCTAGTTTTTTCTTGTATAAATCCTAAGGAATTACCTAAGGAATGGTTGAT
TATATTGGTTGTTGTGCGATGCATCGATGCATATCTTTTTAGGTATTTAGGGATGGATTG
TTTGGTCCGATACAAGCAGCAAAAAAAAAACAATGAAAAAAAGAAATAAAAAGACCTTTA
GTTTCGGATTGAATGTTCCGGTTTAAAAAA

clustalw multiple alignements is not computed in this case