cluster # 5405

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Oryza sativa
cluster # 5405 cluster # 5405 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5405#0 length = 1708 sequences # 2

consensus_5405#1 length = 266 sequences # 1

consensusID : consensus_5405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1708
fasta sequence

                              [GAGTTGTNGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGGGGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGTNGCCCGCAAGNGCCACCTCGACGGCGCCCAGTACCACCGCGCCCGCGCCCTCTGGTACGANGCCGTTCGNCGCCAAGAGCTTNACGGCGGCGTCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCG-CGCCATCGGGTTCTGCCAACACTTCGTNCGTACGGGGACGTGCAANTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGACCAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAGGGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATATGTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTCTCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCTCTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTTTGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTACGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCTGCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAATCAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGTGTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCTAGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTGCAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAACCAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCTCCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGACTAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTGGGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCTGGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGTTATCTACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGCGAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGGGCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTGCCGATTCGTTCAAAAAAAAAATTGTGTT]

[+] EMBL OSC9331              [GAGTTGTNGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGGGGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGTNGCCCGCAAGNGCCACCTCGACGGCGCCCAGTACCACCGCGCCCGCGCCCTCTGGTACGANGCCGTTCGNCGCCAAGAGCTTNACGGCGGCGTCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCG CGCCATCGGGTTCTGCCAACACTTCGTNCGTACGGGGACGTGCAANTTTGGGGATTCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK071420             [    TGTCGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGGGGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGCCGCCCGCAAGCGCCACCTCGACGGCGCCCAGCACCACCGCGCCCGCGCCCTCTGGTACGACGCCGTCCGCCGCCAAGAGCTTCACGGCGGCGGCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCGCCGCCATCGGCGTCTGCCAACACTTCGTCCGTACGGGGACGTGCAAGTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGACCAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAGGGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATATGTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTCTCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCTCTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTTTGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTACGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCTGCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAATCAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGTGTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCTAGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTGCAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAACCAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCTCCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGACTAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTGGGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCTGGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGTTATCTACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGCGAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGGGCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTGCCGATTCGTTCAAAAAAAAAATTGTGTT]




>consensus_5405#0
GAGTTGTNGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGG
GGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGAC
ACCCCCGTNGCCCGCAAGNGCCACCTCGACGGCGCCCAGTACCACCGCGCCCGCGCCCTC
TGGTACGANGCCGTTCGNCGCCAAGAGCTTNACGGCGGCGTCGGCGGCGCTCCTCCCCTC
CTCCACCAGCCCGGCGCCGCGCCATCGGGTTCTGCCAACACTTCGTNCGTACGGGGACGT
GCAANTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGAC
CAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTC
AACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAG
GGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCT
ATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATAT
GTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTC
TCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCT
CTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTT
TGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTA
CGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCT
GCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAAT
CAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGT
GTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCT
AGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTG
CAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAAC
CAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCT
CCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGAC
TAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTG
GGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCT
GGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGTTATC
TACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGC
GAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGG
GCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTG
CCGATTCGTTCAAAAAAAAAATTGTGTT

consensusID : consensus_5405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [AGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCANATGGAAGTTNTTTNTCAGGGAACATTTTAGGGGGTCACNCCTCATGGGGCAACTTGCCTCCATCACTGCGGCCNCCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATNTGAAGGTGCCATATGTTGAAACTTCATGCCGGNTATGCAATAGTTCAAACACNCAATGAATTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174116             [AGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCANATGGAAGTTNTTTNTCAGGGAACATTTTAGGGGGTCACNCCTCATGGGGCAACTTGCCTCCATCACTGCGGCCNCCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATNTGAAGGTGCCATATGTTGAAACTTCATGCCGGNTATGCAATAGTTCAAACACNCAATGAATTTTTNTAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5405#1
AGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCANATGGAAGTTNTTTNTCAGGGAA
CATTTTAGGGGGTCACNCCTCATGGGGCAACTTGCCTCCATCACTGCGGCCNCCTCCTGA
AGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATNTGAAGG
TGCCATATGTTGAAACTTCATGCCGGNTATGCAATAGTTCAAACACNCAATGAATTTTTN
TAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5405#0      GAGTTGTNGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGG 60
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGAC 120
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      ACCCCCGTNGCCCGCAAGNGCCACCTCGACGGCGCCCAGTACCACCGCGCCCGCGCCCTC 180
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      TGGTACGANGCCGTTCGNCGCCAAGAGCTTNACGGCGGCGTCGGCGGCGCTCCTCCCCTC 240
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CTCCACCAGCCCGGCGCCGCGCCATCGGGTTCTGCCAACACTTCGTNCGTACGGGGACGT 300
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GCAANTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGAC 360
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTC 420
consensus_5405#1      ----------------------------------------------------AGGAAGTC 8
                                                                          ********

consensus_5405#0      AACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAG 480
consensus_5405#1      AACCCAATTTTGTTGGATATCAGGCAGCANATGGAAGTTNTTTNTCAGGGAACATTTTAG 68
                      ***************************** ********* *** ************ ***

consensus_5405#0      GGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCT 540
consensus_5405#1      GGGGTCACNCCTCATGGGGCAACTTGCCTCCATCACTGCGGCCNCCTCCTGAAGGCGGCT 128
                      ******** ********************************** ****************

consensus_5405#0      ATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATAT 600
consensus_5405#1      ATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATNTGAAGGTGCCATAT 188
                      ********************************************* **************

consensus_5405#0      GTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTC 660
consensus_5405#1      GTTGAAACTTCATGCCGGNTATGCAATAGTTCAAACACNCAATGAATTTTTNTAAAAAAA 248
                      ****************** ******************* ***********  **      

consensus_5405#0      TCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCT 720
consensus_5405#1      AAAAAAAAAAAAAAAAAA------------------------------------------ 266
                         * ***       * *                                          

consensus_5405#0      CTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTT 780
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      TGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTA 840
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCT 900
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAAT 960
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGT 1020
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCT 1080
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      AGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTG 1140
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAAC 1200
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCT 1260
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGAC 1320
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      TAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTG 1380
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCT 1440
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGTTATC 1500
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      TACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGC 1560
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGG 1620
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      GCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTG 1680
consensus_5405#1      ------------------------------------------------------------
                                                                                  

consensus_5405#0      CCGATTCGTTCAAAAAAAAAATTGTGTT 1708
consensus_5405#1      ----------------------------