cluster # 5411

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5411 cluster # 5411 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5411#0 length = 457 sequences # 1

consensus_5411#1 length = 421 sequences # 2

consensusID : consensus_5411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAGAAAAAAAAACCCAAACCCGTTAAAAATTTTCATCCTTTTTTTGGGGGATCCCCCATTACAACCTTTTTCCGGGAATTGGGAAACCAATAACATACCCCATTTTTTAACCCTTAAAAAACCCCCCCCCCCCCCTTTTTTTTTGGTCAACCCCCACCCCAAAGGGCCAACTTTTTTTTTTTTTTTGCATCAAAATTCACCCCCCCCCTTTATAAATGGTAAATGCGGGCGGGCTTTTTAACATTTGCAGGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGGGGTTTCCCCGGATTTTGGGGCCCCCTAAAAATGGGGCCCCTTTTTTTTTTTTACCCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTCCCGGCCCTTAAATT]

[+] EMBL CF314316             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAGAAAAAAAAACCCAAACCCGTTAAAAATTTTCATCCTTTTTTTGGGGGATCCCCCATTACAACCTTTTTCCGGGAATTGGGAAACCAATAACATACCCCATTTTTTAACCCTTAAAAAACCCCCCCCCCCCCCTTTTTTTTTGGTCAACCCCCACCCCAAAGGGCCAACTTTTTTTTTTTTTTTGCATCAAAATTCACCCCCCCCCTTTATAAATGGTAAATGCGGGCGGGCTTTTTAACATTTGCAGGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGGGGTTTCCCCGGATTTTGGGGCCCCCTAAAAATGGGGCCCCTTTTTTTTTTTTACCCCTTAAACCCATGTAAGGGCCCAAGGGCAAATTCCCGGCCCTTAAATT]




>consensus_5411#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
CCAAAGAAAAAAAAACCCAAACCCGTTAAAAATTTTCATCCTTTTTTTGGGGGATCCCCC
ATTACAACCTTTTTCCGGGAATTGGGAAACCAATAACATACCCCATTTTTTAACCCTTAA
AAAACCCCCCCCCCCCCCTTTTTTTTTGGTCAACCCCCACCCCAAAGGGCCAACTTTTTT
TTTTTTTTTGCATCAAAATTCACCCCCCCCCTTTATAAATGGTAAATGCGGGCGGGCTTT
TTAACATTTGCAGGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGGGGTTTC
CCCGGATTTTGGGGCCCCCTAAAAATGGGGCCCCTTTTTTTTTTTTACCCCTTAAACCCA
TGTAAGGGCCCAAGGGCAAATTCCCGGCCCTTAAATT

consensusID : consensus_5411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 421
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAACCCAAACCAGTTTAATATTTTCATCACTTCATTGGGGGATACCCCATTACAAGCATAGTCCGTGAATTGGGAAACCAATAACATAGCACATTGATTAACCCATTAAACACACACACACCCCCCATTTTTTTTGGTCAACCCCCAACCCAAAGGGCCAAGCTTTTTTTTTTTTTTGCTTCAAAATTCACACCCCCACATTATAAATGGTAAATGCAGGCAGGCTTTTTAACATTTGCAAGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGCGGTTTCCCCGGATTTTGGGGCCGCCTAAAACTGGTGGGCCTTTTTTTCCGGGGCCACACCCAAAAAAAAGGGGGCCTTGGGGCTGGTGCTTTT]

[+] EMBL CF313084             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAACCCAAACCAGTTTAATATTTTCATCACTTCATTGGGGGATACCCCATTACAAGCATAGTCCGTGAATTGGGAAACCAATAACATAGCACATTGATTAACCCATTAAACACACACACACCCCCCATTTTTTTTGGTCAACCCCCAACCCAAAGGGCCAAGCTTTTTTTTTTTTTTGCTTCAAAATTCACACCCCCACATTATAAATGGTAAATGCAGGCAGGCTTTTTAACATTTGCAAGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGCGGTTTCCCCGGATTTTGGGGCCGCCTAAAACTGGTGGGCCTTTTTTTCCGGGGCCACACCCAAAAAAAAGGGGGCCTTGGGGCTGGTG     ]
[+] EMBL CF317948             [     TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACCCAAACCAGTTTAATATATTCATCACTTCATCGGGGGATACCCCATTACAAGCATAATACGGGAATAGGGAAACCAATAACATAGCACATTGATTAACCCATTAAACACACACACACACCCCATTTTTTTTGGTCAAGCCCCAACCCAAAGGGCCAAGCTTTTTTATTTTTTTGCATCACAATTCACACCCCCACATGATAAATGGTAAATGCAGGCAGGCTTTTTAACAGTTGCAAGGGTTGCACCTGCAGTTGGAACCGCAGTTGCAGCCATGGGCGGTCTCGCCGGACTTTGGGGCCGCCTAAAACTGGTGCGCCTTTTTTTCCGGGGCCACACCCAAAACAACGGGGGCCTTGGGGCTGTTGCTTTT]




>consensus_5411#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAACCCAAACCAGT
TTAATATTTTCATCACTTCATTGGGGGATACCCCATTACAAGCATAGTCCGTGAATTGGG
AAACCAATAACATAGCACATTGATTAACCCATTAAACACACACACACCCCCCATTTTTTT
TGGTCAACCCCCAACCCAAAGGGCCAAGCTTTTTTTTTTTTTTGCTTCAAAATTCACACC
CCCACATTATAAATGGTAAATGCAGGCAGGCTTTTTAACATTTGCAAGGGTTGCCCCTGC
AGTTGGAACCCCATTTGCACCCATGGGCGGTTTCCCCGGATTTTGGGGCCGCCTAAAACT
GGTGGGCCTTTTTTTCCGGGGCCACACCCAAAAAAAAGGGGGCCTTGGGGCTGGTGCTTT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5411#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_5411#1      ----------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 44
                                      ********************************************

consensus_5411#0      CCAAAGAAAAAAAAACCCAAACCCGTTAAAAATTTTCATCCTTTTTTTGGGGGATCCCCC 120
consensus_5411#1      ----------AAAAACCCAAACCAGTTTAATATTTTCATCACTTCATTGGGGGATACCCC 94
                                ************* *** ** *********  **  ********* ****

consensus_5411#0      ATTACAACCTTTTTCCGGGAATTGGGAAACCAATAACATACCCCATTTTTTAACCCTTAA 180
consensus_5411#1      ATTACAAGCATAGTCCGTGAATTGGGAAACCAATAACATAGCACATTGATTAACCCATTA 154
                      ******* * *  **** ********************** * ****  ******* * *

consensus_5411#0      AAAACCCCCCCCCCCCCCTTTTTTTTTGGTCAACCCCCACCCCAAAGGGCCAACTTTTTT 240
consensus_5411#1      AACACACACACACCCCCCATTTTTTTTGGTCAACCCCCAACCCAAAGGGCCAAGCTTTTT 214
                      ** ** * * * ****** ******************** *************  *****

consensus_5411#0      TTTTTTTTTGCATCAAAATTCACCCCCCCCCTTTATAAATGGTAAATGCGGGCGGGCTTT 300
consensus_5411#1      TTTTTTTTTGCTTCAAAATTCACACCCCCACATTATAAATGGTAAATGCAGGCAGGCTTT 274
                      *********** *********** ***** * ***************** *** ******

consensus_5411#0      TTAACATTTGCAGGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGGGGTTTC 360
consensus_5411#1      TTAACATTTGCAAGGGTTGCCCCTGCAGTTGGAACCCCATTTGCACCCATGGGCGGTTTC 334
                      ************ **************************************** ******

consensus_5411#0      CCCGGATTTTGGGGCCCCCTAAAAATGGGGCCCCTTTTTTTTTTTTACCCCTTAAACCCA 420
consensus_5411#1      CCCGGATTTTGGGGCCGCCTAAAACTGGTGGGCCTTTTTTTCCGGGGCCACACCCAAAAA 394
                      **************** ******* *** *  *********      ** *    *   *

consensus_5411#0      TGTAAGGGCCCAAGGGCAAATTCCCGGCCCTTAAATT 457
consensus_5411#1      AAAGGGGGCCTTGGGGCTGGTGCTTTT---------- 421
                           *****   ****   * *