cluster # 5415

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Oryza sativa
cluster # 5415 cluster # 5415 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5415#0 length = 1049 sequences # 2

consensus_5415#1 length = 1036 sequences # 1

consensusID : consensus_5415#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1049
fasta sequence

                              [TTTCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACTATCTCCTCCTAGCCCTGTGGCTCGCCGCGTCGTCGTCGTTCGCCGTCGCCGTCGCCGTCGCCGGCCATGGCCGCGGTCGCCGCAGCCATGTGTCGTCGATCGTGACGGAGGAGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCCCGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCTTCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGGTCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCCTCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGCGGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCAATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCATAATCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTCTTTCAATAATGCAAATCAAAAGTTCCAATAATGAAAAAATTGGTTAATAGGATCGACA]

[+] EMBL AK101475             [TTTCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACTATCTCCTCCTAGCCCTGTGGCTCGCCGCGTCGTCGTCGTTCGCCGTCGCCGTCGCCGTCGCCGGCCATGGCCGCGGTCGCCGCAGCCATGTGTCGTCGATCGTGACGGAGGAGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCCCGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCTTCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGGTCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCCTCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGCGGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCAATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCATAATCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTCTTTCAATAATGCAAAT                                          ]
[+] EMBL AK110261             [  TCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACTATCTCCTCCTAGCCCTGTGGCTCGCCGCGTCGTCGTCGTTCGCCGTCGCCGTCGCCGTCGCCGGCCATGGCCGCGGTCGCCGCAGCCATGTGTCGTCGATCGTGACGGAGGCGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCCCGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCTTCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGGTCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCCTCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGCGGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCAATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCATAATCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTCTTTCAATAATGCAAATCAAAAGTTCCAATAATGAAAAAATTGGTTAATAGGATCGACA]




>consensus_5415#0
TTTCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACT
ATCTCCTCCTAGCCCTGTGGCTCGCCGCGTCGTCGTCGTTCGCCGTCGCCGTCGCCGTCG
CCGGCCATGGCCGCGGTCGCCGCAGCCATGTGTCGTCGATCGTGACGGAGGAGATGTACA
ACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCCCGGCGAGGAACTTCTACACCT
ACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCTTCGGCGGCGCCGGCGGCCGCG
ACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGGTCTCCCACGAGACCACCGGCG
GCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCCTCTGCTTCAAGGAGGAGCTCA
AGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGCGGTGGCCGTGCTTCCCCGGCA
AGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGAACTTCAACTACGGGCCGGCCG
GCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGGTGGTCGCCGGCGACGCCGTGG
TGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGCGGCCGCCGTCGAAGCCGTACT
CGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGAGGGCCGACGCGGCGGCGAACC
GGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCAATGGCGGACTCGAGTGCAACA
ACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCGGATTCTTCCGGCGATACTGCG
GCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCGCACACCAGTTGCCCTACTCAT
AATCGCGATTTGTTCATTGCTACTATTACGACATCCTTTTTTTTTGTTTTACTTCTTGAT
GATGTTTAATTAGTTTACTTGATTATGTTTCTTTCAATAATGCAAATCAAAAGTTCCAAT
AATGAAAAAATTGGTTAATAGGATCGACA

consensusID : consensus_5415#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1036
fasta sequence

                              [TATCACAGTCACAGCTGCAGCCATGGCGAAGCCCACTCCTGCTCCTCGCGCCACACCATTCCTCCTCGCCGCCGTGCTCTCCATCGTCGTCGTCGCGGCCTCCGGCGCGGAGGCGCGGTGGTACGGCGGCGGCGGCGGCGGCGGGTACAGCCCCAGCCCCAGCCCGGTGTCGTCGATCGTCAGCGAGCAGCTGTACGCCTCCCTGTTCCTGCACAAGGACGACGCGGCCTGCCCGGCGAGGGGGTTCTACACCTACGCGTCCTTCGTCAGGGCCGCGACGAGGTTCCCCCGGTTCGCCGCCACGGGCTGCGCCGACGCCCGCAAGCGCGAGGTCGCCGCCTTCCTCGCGCAGATCTCCCACGAGACCACCGGCGGCTGGGCCACCGCGCCCGACGGCCCCTACGCCTGGGGCCTCTGCTACAAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAAGCAGTGGCCGTGCTACCCCGGCAAGTCCTACCATGGCCGAGGCCCCATCCAAATCTCATGGAACTTCAACTACGGGCCGGCGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGATCGTGGCCAACTGCTCGGACATAGCGTTCCAGACGGCGCTGTGGTTCTGGATGACGCCGAGGGACACCAAGCCGTCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCCCGGCCGACGTGGCGGCTAACCGCACGGCGGGCTTCGGGCTGGTCACCAACATCGTCAACGGCGGGCTCGAGTGCAACCGGGCAGGCGACGCCCGGGTGAACAACCGCATCGGCTTCTACCGGCGCTACTGCCAGGTGCTCGGCGTCGACGTCGGGCCCAACCTCGACTGCGAGCACCAGCAGCCCTTCTAGCTTGCTATAAAAATTCATGTCGTTTCTCATGTCGCTGCTTGCGATTAGCTGTAAGATTTAATTTTAAGTGTTGTTGCGTGAACTGTGTACACGCCGTCTTGTTTTGTCTCATTCATTGGAAATTGGAATCAAGGAAAACTG]

[+] EMBL AK063062             [TATCACAGTCACAGCTGCAGCCATGGCGAAGCCCACTCCTGCTCCTCGCGCCACACCATTCCTCCTCGCCGCCGTGCTCTCCATCGTCGTCGTCGCGGCCTCCGGCGCGGAGGCGCGGTGGTACGGCGGCGGCGGCGGCGGCGGGTACAGCCCCAGCCCCAGCCCGGTGTCGTCGATCGTCAGCGAGCAGCTGTACGCCTCCCTGTTCCTGCACAAGGACGACGCGGCCTGCCCGGCGAGGGGGTTCTACACCTACGCGTCCTTCGTCAGGGCCGCGACGAGGTTCCCCCGGTTCGCCGCCACGGGCTGCGCCGACGCCCGCAAGCGCGAGGTCGCCGCCTTCCTCGCGCAGATCTCCCACGAGACCACCGGCGGCTGGGCCACCGCGCCCGACGGCCCCTACGCCTGGGGCCTCTGCTACAAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAAGCAGTGGCCGTGCTACCCCGGCAAGTCCTACCATGGCCGAGGCCCCATCCAAATCTCATGGAACTTCAACTACGGGCCGGCGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGATCGTGGCCAACTGCTCGGACATAGCGTTCCAGACGGCGCTGTGGTTCTGGATGACGCCGAGGGACACCAAGCCGTCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCCCGGCCGACGTGGCGGCTAACCGCACGGCGGGCTTCGGGCTGGTCACCAACATCGTCAACGGCGGGCTCGAGTGCAACCGGGCAGGCGACGCCCGGGTGAACAACCGCATCGGCTTCTACCGGCGCTACTGCCAGGTGCTCGGCGTCGACGTCGGGCCCAACCTCGACTGCGAGCACCAGCAGCCCTTCTAGCTTGCTATAAAAATTCATGTCGTTTCTCATGTCGCTGCTTGCGATTAGCTGTAAGATTTAATTTTAAGTGTTGTTGCGTGAACTGTGTACACGCCGTCTTGTTTTGTCTCATTCATTGGAAATTGGAATCAAGGAAAACTG]




>consensus_5415#1
TATCACAGTCACAGCTGCAGCCATGGCGAAGCCCACTCCTGCTCCTCGCGCCACACCATT
CCTCCTCGCCGCCGTGCTCTCCATCGTCGTCGTCGCGGCCTCCGGCGCGGAGGCGCGGTG
GTACGGCGGCGGCGGCGGCGGCGGGTACAGCCCCAGCCCCAGCCCGGTGTCGTCGATCGT
CAGCGAGCAGCTGTACGCCTCCCTGTTCCTGCACAAGGACGACGCGGCCTGCCCGGCGAG
GGGGTTCTACACCTACGCGTCCTTCGTCAGGGCCGCGACGAGGTTCCCCCGGTTCGCCGC
CACGGGCTGCGCCGACGCCCGCAAGCGCGAGGTCGCCGCCTTCCTCGCGCAGATCTCCCA
CGAGACCACCGGCGGCTGGGCCACCGCGCCCGACGGCCCCTACGCCTGGGGCCTCTGCTA
CAAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAAGCAGTGGCCGTG
CTACCCCGGCAAGTCCTACCATGGCCGAGGCCCCATCCAAATCTCATGGAACTTCAACTA
CGGGCCGGCGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGATCGTGGCCAA
CTGCTCGGACATAGCGTTCCAGACGGCGCTGTGGTTCTGGATGACGCCGAGGGACACCAA
GCCGTCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCCCGGCCGACGTGGCGGC
TAACCGCACGGCGGGCTTCGGGCTGGTCACCAACATCGTCAACGGCGGGCTCGAGTGCAA
CCGGGCAGGCGACGCCCGGGTGAACAACCGCATCGGCTTCTACCGGCGCTACTGCCAGGT
GCTCGGCGTCGACGTCGGGCCCAACCTCGACTGCGAGCACCAGCAGCCCTTCTAGCTTGC
TATAAAAATTCATGTCGTTTCTCATGTCGCTGCTTGCGATTAGCTGTAAGATTTAATTTT
AAGTGTTGTTGCGTGAACTGTGTACACGCCGTCTTGTTTTGTCTCATTCATTGGAAATTG
GAATCAAGGAAAACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5415#0      TTTCTCCATCAATAATGGCGGGACGACGACGACGCCCATTCGCTGCTCCGGTCATCAACT 60
consensus_5415#1      TATCACAGTCA-CAGCTGCAG--CCATGGCGAAGCCCACTC-CTGCTCCTCGCGCCACAC 56
                      * ** *  ***  *   ** *  * * * *** ***** ** *******   *  **   

consensus_5415#0      ATCTCCTCCTAGCCCTGTGGCTCGCCG-CGTCGTCGTCGT--TCGCCGTCGC-------- 109
consensus_5415#1      CATTCCTCCTCGCCGCCGTGCTCTCCATCGTCGTCGTCGCGGCCTCCGGCGCGGAGGCGC 116
                         ******* ***     **** **  ***********    * *** ***        

consensus_5415#0      -------CGTCGCCGTCGCCGGCCATGGCCGCGGTC---GCCGCAGCCATGTGTCGTCGA 159
consensus_5415#1      GGTGGTACGGCGGCGGCGGCGGCGGCGGGTACAGCCCCAGCCCCAGCCCGGTGTCGTCGA 176
                             ** ** ** ** ****   **   * * *   *** *****  **********

consensus_5415#0      TCGTGACGGAGGAGATGTACAACAAGTCGCTGTTCATCCACAAGGACGACGCCGCCTGCC 219
consensus_5415#1      TCGTCAGCGAGCAGCTGTACGCC---TCCCTGTTCCTGCACAAGGACGACGCGGCCTGCC 233
                      **** *  *** ** *****  *   ** ****** * ************** *******

consensus_5415#0      CGGCGAGGAACTTCTACACCTACGCCGCCTTCCTCCGCGCCGCCGACCAGTACCCGAGCT 279
consensus_5415#1      CGGCGAGGGGGTTCTACACCTACGCGTCCTTCGTCAGGGCCGCGACGAGGTTCCCCCGGT 293
                      ********   **************  ***** ** * *****      ** ***  * *

consensus_5415#0      TCGGCGGCGCCGGCGGCCGCGACACGCGCCGGCGGGAGGTCGCCGCCTTCCTCGCGCAGG 339
consensus_5415#1      TCGCCGCCACGGGCTGCGCCGACGCCCGCAAGCGCGAGGTCGCCGCCTTCCTCGCGCAGA 353
                      *** ** * * *** **  **** * ***  *** ************************ 

consensus_5415#0      TCTCCCACGAGACCACCGGCGGCTGGGCCACCGCCCCCGATGGGCCCTACACCTGGGGCC 399
consensus_5415#1      TCTCCCACGAGACCACCGGCGGCTGGGCCACCGCGCCCGACGGCCCCTACGCCTGGGGCC 413
                      ********************************** ***** ** ****** *********

consensus_5415#0      TCTGCTTCAAGGAGGAGCTCAAGCCGGCGAGCAACTACTGCGACGCCGCCGTCGCCGCGC 459
consensus_5415#1      TCTGCTACAAGGAGGAGATCAACCCGCAGAGCAGCTACTGCGACGCCACCGACAA---GC 470
                      ****** ********** **** ***  ***** ************* *** *     **

consensus_5415#0      GGTGGCCGTGCTTCCCCGGCAAGTCGTACCATGGCCGCGGCCCCATCCAGCTGTCGTGGA 519
consensus_5415#1      AGTGGCCGTGCTACCCCGGCAAGTCCTACCATGGCCGAGGCCCCATCCAAATCTCATGGA 530
                       *********** ************ *********** ***********  * ** ****

consensus_5415#0      ACTTCAACTACGGGCCGGCCGGCGAGGCGGTGGGGTTCGACGGGCTCCGGGAGCCGGAGG 579
consensus_5415#1      ACTTCAACTACGGGCCGGCGGGCCAGGCCCTGGGCTTCGATGGTCTGCGCAACCCGGAGA 590
                      ******************* *** ****  **** ***** ** ** **  * ****** 

consensus_5415#0      TGGTCGCCGGCGACGCCGTGGTGGCGTTCAAGACGGCGCTGTGGTTCTGGATGACGCCGC 639
consensus_5415#1      TCGTGGCCAACTGCTCGGACATAGCGTTCCAGACGGCGCTGTGGTTCTGGATGACGCCGA 650
                      * ** ***  *  * * *   * ****** ***************************** 

consensus_5415#0      GGCCGCCGTCGAAGCCGTACTCGTGCCACGACGTGATGACGGGGAGGTACCGGCCGTCGA 699
consensus_5415#1      GG--GACACC-AAGCCG---TCGTGCCACCAGGTGATGGTCGGGGAGTACCGGCCCGGCC 704
                      **  * *  * ******   ********* * ******   ***  *********     

consensus_5415#0      GGGCCGACGCGGCGGCGAACCGGACGGCGGCCGGGTTCGGGCTGACGACGAACATCATCA 759
consensus_5415#1      CGGCCGACGTGGCGGCTAACCGCACGGCGG---GCTTCGGGCTGGTCACCAACATCGTCA 761
                       ******** ****** ***** *******   * *********   ** ****** ***

consensus_5415#0      ATGGCGGACTCGAGTGCAACAACCGCACCGGCGGCGATCCCCGGGTGGAGGACCGGATCG 819
consensus_5415#1      ACGGCGGGCTCGAGTGCAA---CCGGGCAGGCGACG---CCCGGGTGAACAACCGCATCG 815
                      * ***** ***********   ***  * **** **   ******** *  **** ****

consensus_5415#0      GATTCTTCCGGCGATACTGCGGCGCGCTCGGCGTCGATGTCGGTGACAACCTCGACTGCG 879
consensus_5415#1      GCTTCTACCGGCGCTACTGCCAGGTGCTCGGCGTCGACGTCGGGCCCAACCTCGACTGCG 875
                      * **** ****** ******   * ************ *****   **************

consensus_5415#0      CACACCAGTTGCCCT----ACTCATAATCGCGATTTGT-TCATTGCTACTATTACGACAT 934
consensus_5415#1      AGCACCAGCAGCCCTTCTAGCTTGCTATAAAAATTCATGTCGTTTCTCATGTCGCTGCTT 935
                        ******  *****     **    **    ***  * ** ** **  * *  *  * *

consensus_5415#0      CCTTTT---TTTTTGTTTTACTTCTTGATGATGTTTAATTAGTTTACTTGATTATGTTTC 991
consensus_5415#1      GCGATTAGCTGTAAGATTTAATTTTAAGTGTTGTTGCGTGAACTGTGTACACGCCGTCTT 995
                       *  **   * *  * **** ** *   ** ****   * *  *   *  *    ** * 

consensus_5415#0      TTTCAATAATGCAAATCAAAAGTTCCAATAATGAAAAAATTGGTTAATAGGATCGACA 1049
consensus_5415#1      GTTTTGTCTCATTCATTGGAAATTGGAATCAAGGAAAACTG----------------- 1036
                       **   *       **   ** **  *** * * **** *