These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence [CGGCGCATGCGCTATGCAGATGCGCACTCTTCGAGGAAGTCAT-CCGTCCCGCTGCTCTGC-CCGG-GCCCCCCCCCCGCCATC-GCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTCCCAAGACTACAACTCCTACTGGCA-AGGCCGTGCCTCTACTCTTGAAGAGGACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGCGCTGTCCG-CTGTTTCTGCGTCTGGTGCTGTGTTCTTCACTCTGTTAGCACTTCGCAATCATGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTATCCTTGATGGTTATGTATTTTGTGGTACTAAGTCTAAGCACCTTTAATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGTGCCATGCATTTGGATAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI800807 [CGGCGCATGCGCTATGCAGATGCGCACTCTTCGAGGAAGTCAT CCGTCCCGCTGCTCTGC CCGG GCCCCCCCCCCGCCATC GCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTCCCAAGACTACAACTCCTACTGGCA AGGCCGTGCCTCTACTCTTGAAGAGGACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGCGCTGTCCG CTGTTTCTGCGTCTGGTGCTGTGTTCTTCACTCTGTTAGCACTTCGCAATCATGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTATCCTTGATGGTTATGTATTTTGTGGTACTAAGTCTAAGCACCTTTAATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGTGCCATGCATTTGGATAAAAAAAAAA ] [+] EMBL BI801053 [ TCATCCCGTCCCGCTGCTCTGCGCCGGCACCGCCCCGCCGCCTTCTGCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTCCCAAGACTAC ACTCCTACTGGCACAGGCCGTGCCTCTACTCTTGAAGAGGACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGCGCTGTCCGCCTGTTTCTGCGTCTGGT CTGTGTTCTTCACTCTGTTAGCACTTCGC ATCATGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTATCCTTGATGGTTATGTATTTTGTGGTACTAAGTCTAAGCACCTTTTATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGTGGCATGCATTTGGATAATGTGTAACAAAAAAAAAA] consensusID : consensus_5419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [CCGTTCCCGTCTGCTCTGCGCCGGGCGCCCCGCCTCCGCCATCGCGCTCCCTCCACCGCCTCGAGGACACAACATCTCCCAAGACTACAACTCCTACTGCAAGGCCGTGCCTCTACTCTTGAAGAGGACAACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCGGATGAAGCAAGATATTACAGGATCGTGGCGCTGTCTGCTGTTTCTGCCTCTGGTGTTGTGTTCTTCACCCTGTTAGCCCTTCGCAATCATTTGAATCACCTGTCTGAATGTTAGCTTTACCATATCCGCGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTAGCTTTACCATATCCTTGATGGTTATGTATTTTGTGGTACCAAGTCTAAGCACCTTTTATCTATGAGACGATGCAACCTGTGGCTTTGTATTGATATGGCATGCATTTGGATAATGTGTAACGTACTGCACTCTTATGTATTTCAACCTTATATAAAAA] [+] EMBL BI803184 [CCGTTCCCGTCTGCTCTGCGCCGGGCGCCCCGCCTCCGCCATCGCGCTCCCTCCACCGCCTCGAGGACACAACATCTCCCAAGACTACAACTCCTACTGCAAGGCCGTGCCTCTACTCTTGAAGAGGACAACATCAGGTTTCTTGCTGAATTGGCTAAACGACATGCGGATGAAGCAAGATATTACAGGATCGTGGCGCTGTCTGCTGTTTCTGCCTCTGGTGTTGTGTTCTTCACCCTGTTAGCCCTTCGCAATCATTTGAATCACCTGTCTGAATGTTAGCTTTACCATATCCGCGTTAGCCCTTCGAATCATGTGATTCACCTGTCTGAATGTTAGCTTTACCATATCCTTGATGGTTATGTATTTTGTGGTACCAAGTCTAAGCACCTTTTATCTATGAGACGATGCAACCTGTGGCTTTGTATTGATATGGCATGCATTTGGATAATGTGTAACGTACTGCACTCTTATGTATTTCAACCTTATATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5419#0 CGGCGCATGCGCTATGCAGATGCGCACTCTTCGAGGAAGTCATCCGTCCCG-CTGCTCTG 59 consensus_5419#1 ------------------------------------------CCGTTCCCGTCTGCTCTG 18 * ***** ******** consensus_5419#0 C-CCGGGCCCCCC--CCCCGCCATCGCGCTCCCTCCACCGCCTCGAGGGCACAGCATCTC 116 consensus_5419#1 CGCCGGGCGCCCCGCCTCCGCCATCGCGCTCCCTCCACCGCCTCGAGGACACAACATCTC 78 * ****** **** * ******************************* **** ****** consensus_5419#0 CCAAGACTACAACTCCTACTGGCAAGGCCGTGCCTCTACTCTTGAAGAGGACA---TCAG 173 consensus_5419#1 CCAAGACTACAACTCCTACTG-CAAGGCCGTGCCTCTACTCTTGAAGAGGACAACATCAG 137 ********************* ******************************* **** consensus_5419#0 GTTTCTTGCTGAATTGGCTAAACGACATGCAGATGAAGCGAGATATTACAGGATCATGGC 233 consensus_5419#1 GTTTCTTGCTGAATTGGCTAAACGACATGCGGATGAAGCAAGATATTACAGGATCGTGGC 197 ****************************** ******** *************** **** consensus_5419#0 GCTGTCCGCTGTTTCTGCGTCTGGTGCTGTGTTCTTCACTCTGTTAGCACTTCGCAATCA 293 consensus_5419#1 GCTGTCTGCTGTTTCTGCCTCTGGTGTTGTGTTCTTCACCCTGTTAGCCCTTCGCAATCA 257 ****** *********** ******* ************ ******** *********** consensus_5419#0 TGTGAATCACCTGTCTGAATATTAGCTTTACCATATCCCTGTTAGCCCTTCGAATCATGT 353 consensus_5419#1 TTTGAATCACCTGTCTGAATGTTAGCTTTACCATATCCGCGTTAGCCCTTCGAATCATGT 317 * ****************** ***************** ******************** consensus_5419#0 GATTCACCTGTCTGAATGTTA-----------TCCTTGATGGTTATGTATTTTGTGGTAC 402 consensus_5419#1 GATTCACCTGTCTGAATGTTAGCTTTACCATATCCTTGATGGTTATGTATTTTGTGGTAC 377 ********************* **************************** consensus_5419#0 TAAGTCTAAGCACCTTTAATCTATGAGACGGTACAAACCTATGTGGCTTTGTATTAATGT 462 consensus_5419#1 CAAGTCTAAGCACCTTTTATCTATGAGACGATGCAACC---TGTGGCTTTGTATTGATAT 434 **************** ************ * *** * ************** ** * consensus_5419#0 GCCATGCATTTGGATAAAAAAAAAAAAAAAAAAAA------------------------- 497 consensus_5419#1 GGCATGCATTTGGATAATGTGTAACGTACTGCACTCTTATGTATTTCAACCTTATATAAA 494 * *************** ** * * consensus_5419#0 -- consensus_5419#1 AA 496 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||