cluster # 5431

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Oryza sativa
cluster # 5431 cluster # 5431 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5431#0 length = 396 sequences # 1

consensus_5431#1 length = 382 sequences # 1
consensus_5431#2 length = 234 sequences # 1

consensusID : consensus_5431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAGGGCCCCCGGGCCCCAATTTTTTAACCCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCCAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTTACCCCTTAAACCCATGTAAGGGGCCCCGGGCCCAAATTTTTTTACCCCTTAAACCCATGGAAGGGGCCCCGGGCCCAAATTTTTTTA]

[+] EMBL CF313179             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAGGGCCCCCGGGCCCCAATTTTTTAACCCCTTAAACCCAGGGAAGGGCCCCCGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCCAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTTACCCCTTAAACCCATGTAAGGGGCCCCGGGCCCAAATTTTTTTACCCCTTAAACCCATGGAAGGGGCCCCGGGCCCAAATTTTTTTA]




>consensus_5431#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTAAAAAAAAGGGCCCCCGGGCCCCAATTTTTTAACCCCTTAAACCCAGGGAAGGGCCCC
CGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCCAATTTTTTA
ACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTAACCCCTTAAACCCATGG
AAGGGCCCCGGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCA
AATTTTTTTACCCCTTAAACCCATGTAAGGGGCCCCGGGCCCAAATTTTTTTACCCCTTA
AACCCATGGAAGGGGCCCCGGGCCCAAATTTTTTTA

consensusID : consensus_5431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACACCGGAACCCCCTAGGAACATGTTTTTTCGGGGGGGAAACCGGGCAGAAACCCCTTTACAGGCACAAACTTCCCGGGAGTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACCCCTTAAACCCATGGAAGGGGCCCGGGGCCCCAACCTTTTTACTCCTTCAACCCATGTAAGGGGCC]

[+] EMBL CF326875             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACACCGGAACCCCCTAGGAACATGTTTTTTCGGGGGGGAAACCGGGCAGAAACCCCTTTACAGGCACAAACTTCCCGGGAGTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACCCCTTAAACCCATGGAAGGGGCCCGGGGCCCCAACCTTTTTACTCCTTCAACCCATGTAAGGGGCC]




>consensus_5431#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACACC
GGAACCCCCTAGGAACATGTTTTTTCGGGGGGGAAACCGGGCAGAAACCCCTTTACAGGC
ACAAACTTCCCGGGAGTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATT
TTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACC
CATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGG
GCCCCAATTTTTTTACCCCTTAAACCCATGGAAGGGGCCCGGGGCCCCAACCTTTTTACT
CCTTCAACCCATGTAAGGGGCC

consensusID : consensus_5431#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 234
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCCTTAAACCCATGGAAAGGGCCTCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCCCCAATTTTTTT]

[+] EMBL CF316872             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCCTTAAACCCATGGAAAGGGCCTCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCCCCAATTTTTTT]




>consensus_5431#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TAACCCCTTAAACCCATGGAAAGGGCCTCGGGCCCCAATTTTTTTACTCCTTAAACCCAT
GGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCC
CCAATTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCCCCAATTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5431#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_5431#2      -------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 53
consensus_5431#1      --------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 52
                              ****************************************************

consensus_5431#0      TTAAAAAAAAGGGCCCCCGGGCCCCAATTTTTTAACCCCTTAAACCCAGGGAAGGGCCCC 120
consensus_5431#2      TT-------------------------TTTTTTAACCCCTTAAACCCATGGAAAGGGCCT 88
consensus_5431#1      AAAACACCGGAACCCCCTAGGAACATGTTTTTTCGGGGGGGAAACCGGGCAGAAACCCCT 112
                                                 ******        *****      *    ** 

consensus_5431#0      ---CGGGCCCAAATTT----------TTTAACCCCTTAAACCCATGGAAGGGCCCCGGGG 167
consensus_5431#2      ---CGGGCCCCAATTT----------TTTTACTCCTTAAACCCATGGAAGGGGCCCCGGG 135
consensus_5431#1      TTACAGGCACAAACTTCCCGGGAGTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGG 172
                         * *** * ** **          *** ** ******************* *** ***

consensus_5431#0      CCCCAATTTTTTAACCCCTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTAACCC 227
consensus_5431#2      CCCCAATTTTTTTACTCCTTAAAACCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTC 195
consensus_5431#1      CCCCAATTTTTTTACTCCTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTC 232
                      ************ ** ******* *********** *** ****** ******** ** *

consensus_5431#0      CTTAAACCCATGGAAGGGCCCCGGGGCCCAAATTTTTTAACCCCTTAAACCCATGGAAGG 287
consensus_5431#2      CTTAAAACCATGGAAGGGGCCCCGGGCCCCAATTTTTTT--------------------- 234
consensus_5431#1      CTTAAACCCATGGAAGGGGCCCCGGGCCCCAATTTTTTTACTCCTTAAACCCATGGAAGG 292
                      ****** *********** *** ****** ********                      

consensus_5431#0      GCCCCGGGGCCCAAATTTTTTTACCCCTTAAACCCATGTAAGGGGCCCCGGGCCCAAATT 347
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      GGCCCCGGGCCCCAATTTTTTTACCCCTTAAACCCATGGAAGGGGCCCGGGGCCCCAACC 352
                                                                                  

consensus_5431#0      TTTTTACCCCTTAAACCCATGGAAGGGGCCCCGGGCCCAAATTTTTTTA 396
consensus_5431#2      -------------------------------------------------
consensus_5431#1      TTTTTACTCCTTCAACCCATGTAAGGGGCC------------------- 382