cluster # 5432

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5432 cluster # 5432 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5432#0 length = 698 sequences # 1

consensus_5432#1 length = 690 sequences # 1
consensus_5432#2 length = 243 sequences # 1

consensusID : consensus_5432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence

                              [TGTCACAGTGACTTGGTATTCATTTTGCAAAGTACTATGCATATTGGTTCATAATAGGTTGCATCTTACGAAACCTGGAAAGCAATTTACCTAAAGCAAACAAGATCAGCCATGAAACACTAATGGGTTGTGCAAAATACACAACTATGCAACCACAAGGTGTTTGTTGGAATTAAGAGCGATGGTTGTAGGTTGAGGCTTTAGTATTCTGTTCTTAATGTCTTCGTCAATAGTTAAAATTACCTCTACATCAACCTATAGACGTCAGTAGTCCAAGCAGTTTGGATAACCCTTGTCATCAAAGCCGCCACCCGCATCTGTTCATTGCGCACCCAACCAGCCAGGTCTGCCCCTGCATCTGTTCATTGCTGTCCTGCCAGGTACTCTCGCCTGCGCTGGCCGCTCCTGGCTGGGCGTTGCGCCGTGTGGGCTGCTTGCCAGTGTTGGTTGACAAATGTGCATTGCGAAGATTAAGCCTGTGCAGGAGTACCACCTTCTTGCATACAAAGACGTTCACTCCTGACTTTGGGATATTATGGTTCAAGGCTTCCAGGCTTCTAGCTGAGTGGTCCTCTTTGCTTCTTGAATAACAGGTCTCTTCGGTTGTGCGAAACTGAAAATGGGGCATGGATTAAGTGTGTTTGACTGTAACATTACAGGAACAATGGCATAATGCTTAAAAATCAGATTCTTAAAAA]

[+] EMBL AU082926             [TGTCACAGTGACTTGGTATTCATTTTGCAAAGTACTATGCATATTGGTTCATAATAGGTTGCATCTTACGAAACCTGGAAAGCAATTTACCTAAAGCAAACAAGATCAGCCATGAAACACTAATGGGTTGTGCAAAATACACAACTATGCAACCACAAGGTGTTTGTTGGAATTAAGAGCGATGGTTGTAGGTTGAGGCTTTAGTATTCTGTTCTTAATGTCTTCGTCAATAGTTAAAATTACCTCTACATCAACCTATAGACGTCAGTAGTCCAAGCAGTTTGGATAACCCTTGTCATCAAAGCCGCCACCCGCATCTGTTCATTGCGCACCCAACCAGCCAGGTCTGCCCCTGCATCTGTTCATTGCTGTCCTGCCAGGTACTCTCGCCTGCGCTGGCCGCTCCTGGCTGGGCGTTGCGCCGTGTGGGCTGCTTGCCAGTGTTGGTTGACAAATGTGCATTGCGAAGATTAAGCCTGTGCAGGAGTACCACCTTCTTGCATACAAAGACGTTCACTCCTGACTTTGGGATATTATGGTTCAAGGCTTCCAGGCTTCTAGCTGAGTGGTCCTCTTTGCTTCTTGAATAACAGGTCTCTTCGGTTGTGCGAAACTGAAAATGGGGCATGGATTAAGTGTGTTTGACTGTAACATTACAGGAACAATGGCATAATGCTTAAAAATCAGATTCTTAAAAA]




>consensus_5432#0
TGTCACAGTGACTTGGTATTCATTTTGCAAAGTACTATGCATATTGGTTCATAATAGGTT
GCATCTTACGAAACCTGGAAAGCAATTTACCTAAAGCAAACAAGATCAGCCATGAAACAC
TAATGGGTTGTGCAAAATACACAACTATGCAACCACAAGGTGTTTGTTGGAATTAAGAGC
GATGGTTGTAGGTTGAGGCTTTAGTATTCTGTTCTTAATGTCTTCGTCAATAGTTAAAAT
TACCTCTACATCAACCTATAGACGTCAGTAGTCCAAGCAGTTTGGATAACCCTTGTCATC
AAAGCCGCCACCCGCATCTGTTCATTGCGCACCCAACCAGCCAGGTCTGCCCCTGCATCT
GTTCATTGCTGTCCTGCCAGGTACTCTCGCCTGCGCTGGCCGCTCCTGGCTGGGCGTTGC
GCCGTGTGGGCTGCTTGCCAGTGTTGGTTGACAAATGTGCATTGCGAAGATTAAGCCTGT
GCAGGAGTACCACCTTCTTGCATACAAAGACGTTCACTCCTGACTTTGGGATATTATGGT
TCAAGGCTTCCAGGCTTCTAGCTGAGTGGTCCTCTTTGCTTCTTGAATAACAGGTCTCTT
CGGTTGTGCGAAACTGAAAATGGGGCATGGATTAAGTGTGTTTGACTGTAACATTACAGG
AACAATGGCATAATGCTTAAAAATCAGATTCTTAAAAA

consensusID : consensus_5432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [TTTTTTTTTTTTTAAGNTAATTTTTTCACACATCCAACTTACATTAGCCAAAGGCATATATTTAGCAAATGGTACAAATACATATACAGAAGTAAAAATAAAAACCAATTTCCTTTTGTTCAGGAAATGTTGTCCATGTCAGCTTCATTCACATCACAAAGTCCGACATGCCCCAAATCAATTGTATTGCTCTAATGGCAGACATGGTTGACTTGATTTTGGTCAATTGTGGTAAAACTACATCTTTCATTTCCACATACTGTAGATAGTTAGAGAAACATATGTACCTTTGTTGAAACTGTAGAAAGCATAAATACAAAAATCACTGAAATGTGCCTATTTGGTATAGGAAAAAGATAATCAAAGAAATGGAACAATTTCTAATTCTGCAAAGCATGTTGAGTAATATAGCATCACCACATCAGTACATAATAGTATGTGAACATAAAATTACCTGGCTTGGTGATCACAAAATCAGCAACGAAAAAATGTAGAAAAGCGCTAATCCCTTATATATACAAAACCGTGCAAGAAATCATTAAAATTCCACATTAATATTTGGTTATCCTGTGAGCCAAGGTCCAGTGCTTACCTTCACTGTGCTCCCTGCAATGCCAAAGAGGACCACCCAGCTAGAAAACTGGAAGCCTTGAACCATAATATCCCAAAGTCAGGAGTGAACGTCTTTGT]

[+] EMBL CA761950             [TTTTTTTTTTTTTAAGNTAATTTTTTCACACATCCAACTTACATTAGCCAAAGGCATATATTTAGCAAATGGTACAAATACATATACAGAAGTAAAAATAAAAACCAATTTCCTTTTGTTCAGGAAATGTTGTCCATGTCAGCTTCATTCACATCACAAAGTCCGACATGCCCCAAATCAATTGTATTGCTCTAATGGCAGACATGGTTGACTTGATTTTGGTCAATTGTGGTAAAACTACATCTTTCATTTCCACATACTGTAGATAGTTAGAGAAACATATGTACCTTTGTTGAAACTGTAGAAAGCATAAATACAAAAATCACTGAAATGTGCCTATTTGGTATAGGAAAAAGATAATCAAAGAAATGGAACAATTTCTAATTCTGCAAAGCATGTTGAGTAATATAGCATCACCACATCAGTACATAATAGTATGTGAACATAAAATTACCTGGCTTGGTGATCACAAAATCAGCAACGAAAAAATGTAGAAAAGCGCTAATCCCTTATATATACAAAACCGTGCAAGAAATCATTAAAATTCCACATTAATATTTGGTTATCCTGTGAGCCAAGGTCCAGTGCTTACCTTCACTGTGCTCCCTGCAATGCCAAAGAGGACCACCCAGCTAGAAAACTGGAAGCCTTGAACCATAATATCCCAAAGTCAGGAGTGAACGTCTTTGT]




>consensus_5432#1
TTTTTTTTTTTTTAAGNTAATTTTTTCACACATCCAACTTACATTAGCCAAAGGCATATA
TTTAGCAAATGGTACAAATACATATACAGAAGTAAAAATAAAAACCAATTTCCTTTTGTT
CAGGAAATGTTGTCCATGTCAGCTTCATTCACATCACAAAGTCCGACATGCCCCAAATCA
ATTGTATTGCTCTAATGGCAGACATGGTTGACTTGATTTTGGTCAATTGTGGTAAAACTA
CATCTTTCATTTCCACATACTGTAGATAGTTAGAGAAACATATGTACCTTTGTTGAAACT
GTAGAAAGCATAAATACAAAAATCACTGAAATGTGCCTATTTGGTATAGGAAAAAGATAA
TCAAAGAAATGGAACAATTTCTAATTCTGCAAAGCATGTTGAGTAATATAGCATCACCAC
ATCAGTACATAATAGTATGTGAACATAAAATTACCTGGCTTGGTGATCACAAAATCAGCA
ACGAAAAAATGTAGAAAAGCGCTAATCCCTTATATATACAAAACCGTGCAAGAAATCATT
AAAATTCCACATTAATATTTGGTTATCCTGTGAGCCAAGGTCCAGTGCTTACCTTCACTG
TGCTCCCTGCAATGCCAAAGAGGACCACCCAGCTAGAAAACTGGAAGCCTTGAACCATAA
TATCCCAAAGTCAGGAGTGAACGTCTTTGT

consensusID : consensus_5432#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 243
fasta sequence

                              [CCGCCCGGGCAGGTGTTTGTTGGAATTAAGAGCGATGGTTGTAGGTTGAGGCTTTAGTATTCTGTTCTTAATGTCTTCGTCAATAGTTAAAATTACCTCTACATCAACCTATAGACGTCAGTAGTCCAAGCAGTTTGGATAACCCTTGTCATCAAAGCCGCCACCCGCATCTGTTCATTGCGCACCCAACCAGCCAGGTCTGCCCCTGCATCTGTTCATTGCTGTCCTGCCAGGTACCTCGGC]

[+] EMBL AW069996             [CCGCCCGGGCAGGTGTTTGTTGGAATTAAGAGCGATGGTTGTAGGTTGAGGCTTTAGTATTCTGTTCTTAATGTCTTCGTCAATAGTTAAAATTACCTCTACATCAACCTATAGACGTCAGTAGTCCAAGCAGTTTGGATAACCCTTGTCATCAAAGCCGCCACCCGCATCTGTTCATTGCGCACCCAACCAGCCAGGTCTGCCCCTGCATCTGTTCATTGCTGTCCTGCCAGGTACCTCGGC]




>consensus_5432#2
CCGCCCGGGCAGGTGTTTGTTGGAATTAAGAGCGATGGTTGTAGGTTGAGGCTTTAGTAT
TCTGTTCTTAATGTCTTCGTCAATAGTTAAAATTACCTCTACATCAACCTATAGACGTCA
GTAGTCCAAGCAGTTTGGATAACCCTTGTCATCAAAGCCGCCACCCGCATCTGTTCATTG
CGCACCCAACCAGCCAGGTCTGCCCCTGCATCTGTTCATTGCTGTCCTGCCAGGTACCTC
GGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5432#0      TGTCACAGTGACTTGGTATTCATTTTGCAAAGTACTATGCATATTGGTTCATAATAGGTT 60
consensus_5432#2      ------------------------------------------------------------
consensus_5432#1      TTTTTTTTTTTTTAAGNTAATTTTTTCACACATCCAACTTACATTAGCCAAAGGCATATA 60
                                                                                  

consensus_5432#0      GCATCTTACGAAACCTGGAAAGCAATTTACCTAAAGCAAACAAGATCAGCCATGAAACAC 120
consensus_5432#2      ------------------------------------------------------------
consensus_5432#1      TTTAGCAAATGGTACAAATACATATACAGAAGTAAAAATAAAAACCAATTTCCTTTTGTT 120
                                                                                  

consensus_5432#0      TAATGGGTTGTGCAAAATACACAACTATGCA-ACCACAAGGT---GTTTGTTGGAATTAA 176
consensus_5432#2      ------------------------CCGCCCG-GGC---AGGT---GTTTGTTGGAATTAA 29
consensus_5432#1      CAGGAAATGTTGTCCATGTCAGCTTCATTCACATCACAAAGTCCGACATGCCCCAAATCA 180
                                                   *    *   * **      **    ** * *

consensus_5432#0      GAGCGATGGTTGTAGGTTGAGGCTTTAGTATTCTGTTCTTAATGTCTTCGTCAATAGTTA 236
consensus_5432#2      GAGCGATGGTTGTAGGTTGAGGCTTTAGTATTCTGTTCTTAATGTCTTCGTCAATAGTTA 89
consensus_5432#1      ATTGTATTGCTCTAATGGCAGACATGGTTGACTTGATTTTGGTCAATTGTGGTAAAACTA 240
                           ** * * **     ** * *   *    ** * **  *   **     * *  **

consensus_5432#0      AAATTACCTCTACATCAACCTATAGACGTC---AGTAGTCCAAGCAGTTTGGATAACCCT 293
consensus_5432#2      AAATTACCTCTACATCAACCTATAGACGTC---AGTAGTCCAAGCAGTTTGGATAACCCT 146
consensus_5432#1      CATCTTTCATTTCCACATACTGTAGATAGTTAGAGAAACATATGTACCTTTGTTGAAACT 300
                       *  *  *  * *  **  ** ****       ** *    * * *  ** * * *  **

consensus_5432#0      --------TGTCATCAAAGCCGCCACCCGCATCTGTTCATTGCGCACCCAACCAGCCAGG 345
consensus_5432#2      --------TGTCATCAAAGCCGCCACCCGCATCTGTTCATTGCGCACCCAACCAGCCAGG 198
consensus_5432#1      GTAGAAAGCATAAATACAAAAATCACTGAAATGTGCCTATTTGGTAT---AGGAAAAAGA 357
                                * *  * *     ***    ** **   ***  * *    *  *   ** 

consensus_5432#0      TCTGCCCCTGCATCTGTTCATTGCTG-TCCTGCCAGGTACTCTCGCCTGCGCTGGCCGCT 404
consensus_5432#2      TCTGCCCCTGCATCTGTTCATTGCTG-TCCTGCCAGGTACCTCGGC-------------- 243
consensus_5432#1      TAATCAAAGAAATGGAACAATTTCTAATTCTGCAAAGCATGTTGAGTAATATAGCATCAC 417
                      *   *      **      *** **  * **** * * *                     

consensus_5432#0      CCTGGCTGGGCGTTGCGCCGTGTGGGCTGCTTGCCAGTGTTGGTTGACAAATGTGCATTG 464
consensus_5432#2      ------------------------------------------------------------
consensus_5432#1      CACATCAGTACATAATAGTATGTGAACATAAAATTA-CCTGGCTTGGTGATCACAAAATC 476
                                                                                  

consensus_5432#0      CGAAGATTAAGCCTGTGCAGGAGTACCACCTTCTTGCATACAAAGACGTTCACTCCTGAC 524
consensus_5432#2      ------------------------------------------------------------
consensus_5432#1      AGCAACGAAAAAATGTAGAAAAGCGCTAATCCCTTATATATACAAAACCGTGCAAGAAAT 536
                                                                                  

consensus_5432#0      TTTGGGATATTATGGTTCAAGGCTTCCAGGCTTCTAGCTGAGTGGTCCTCTTTGCTTCTT 584
consensus_5432#2      ------------------------------------------------------------
consensus_5432#1      CATTAAAATTCCACATTAATA---TTTGGTTATCCTGTGAGCCAAGGTCCAGTGCTTACC 593
                                                                                  

consensus_5432#0      GAATAACAGGTCTCTTCGGTTGTGCGAAACTGAAAATGGGGCATGGATTAAGTGTGTTTG 644
consensus_5432#2      ------------------------------------------------------------
consensus_5432#1      TTCACTGTGCTCCCTGCAATGCCAAAGAGGACCACCCAGCTAGAAAACTGGAAGCCTTGA 653
                                                                                  

consensus_5432#0      ACTGTAACATTACAGGAACAATGGCATAATGCTTAAAAATCAGATTCTTAAAAA 698
consensus_5432#2      ------------------------------------------------------
consensus_5432#1      ACCATAATATCCCAAAGTCAGGAGTGAACGTCTTTGT----------------- 690