These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 687 fasta sequence [TTTTTTTTTTTTTATTGGAAATATTGAAAATGGATTTATTTTTTT--TAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAGACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATCCTATACCCAAATCAAGTTTCACCATAATGTCATCCAAAAGAAAACAAATTAACTAATTCTCCATCAATCGCATTAATTTTAGATGTATGTGTTGGCGACGTCGGCAAGGTGCCCAGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCACCTCCGCCACCTCGGTGTTGGCGACCATCCACCGTTGGTGCTCCTGGACGATGGCCATGTCATTCTCGACCACCACATACACCTTTCTCACGGCGCCGTACCTGTCCTCCCTGAACGCCGACCGACGTCCCAACTCATCCACGTACAAGGAGCTTGCTCGAACCAAGCTCTTCACAAGCGTGTACTCCTGTGTTCCGGTGAGCTTAACTGCCATACCTTCCTTTCCGGAACTCCGTCCCGAACAGGAATGGAAGCGGGACTCCATTTGCATCTACCACGCTGCTCCACCCTGACCGAATCTTACCAAAGCGTATCGTACCCTAAAACCTATAGAGAAGGCCCACAG] [+] EMBL CA763200 [TTTTTTTTTTTTTATTGGAAATATTGAAAATGGATTTATTTTTTT TAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAGACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATCCTATACCCAAATCAAGTTTCACCATAATGTCATCCAAAAGAAAACAAATTAACTAATTCTCCATCAATCGCATTAATTTTAGATGTATGTGTTGGCGACGTCGGCAAGGTGCCCAGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCACCTCCGCCACCTCGGTGTTGGCGACCATCCACCGTTGGTGCTCCTGGACGATGGCCATGTCATTCTCGACCACCACATACACCTTTCTCACGGCGCCGTACCTGTCCTCCCTGAACGCCGACCGACGTCCCAACTCATCCACGTACAAGGAGCTTGCTCGAACCAAGCTCTTCACAAGCGTGTACTCCTGTGTTCCGGTGAGCTTAACTGCCATACCTTCCTTTCCGGAACTCCGTCCCGAACAGGAATGGAAGCGGGACTCCATTTGCATCTACCACGCTGCTCCACCCTGACCGAATCTTACCAAAGCGTATCGTACCCTAAAACCTATAGAGAAGGCCCACAG] [-] EMBL AU174250 [ ttTTTTTTTTTTTGNTAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAGACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATCCTATACCCAAATCAAGTTTCACCATAATGTCATCCAAAAGAAAACAAATTAACTAATTCTCCATCAATCGCATTAATTTTANATGTATGTGTTGGCGACGTCGGCGAGGTGCCCAGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCACCTCCGCCACCTNGGCGTTGGCGACCATCCACCGCTGGTGCTCCTGGACGATGGCCATGTCATTCTCGACCACCACATACACCTTTCTCACGGCGCCGNACCTGTCCTCCCTGAACGCCGCCCGcc ] consensusID : consensus_5436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [TCCTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGAAGAAAATCTTGCTCACTTACATGTGAGTCACCAGTCCAATATGCAAGTTTGGGTAATACTAAAACATAGTGTAAATGAAAAGAAATGATATTACCTAGTGCAATATGTAACTTAGTTAATAAAAAGGGGTCCAAAGTACAGTTTACTCTCAATTAAATATTAGCTATTGTAAATATTGAAAATGGATTTATTTTTTTTAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAAACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATA] [+] EMBL CB659653 [TCCTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTGAAGAAAATCTTGCTCACTTACATGTGAGTCACCAGTCCAATATGCAAGTTTGGGTAATACTAAAACATAGTGTAAATGAAAAGAAATGATATTACCTAGTGCAATATGTAACTTAGTTAATAAAAAGGGGTCCAAAGTACAGTTTACTCTCAATTAAATATTAGCTATTGTAAATATTGAAAATGGATTTATTTTTTTTAAAAAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGTTTGTAATGTCATATTTTCAAATAAACAAATTTATAATGGCTGGATCCAATTAACCCTACTTAGTACTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5436#0 TTTTTTTTTTTTTATTGGAAATATTGAAAATGGATTTATTTTTTTTAAAAAAACTATTGT 60 consensus_5436#1 ----TCCTTTTTTTTTGTTTTTTTT---------TTTTTTTTTTTTGAAGAAAATCTTGC 47 * ****** *** * ** *** ******** ** *** * *** consensus_5436#0 ACATATTAAAAATATTGTAAATATTTACAATATGTGTTTG--TAATGT-----CATATTT 113 consensus_5436#1 TCAC-TTACATGTGAGTCACCAGTCCAATATGCAAGTTTGGGTAATACTAAAACATAGTG 106 ** *** * * * * * ** ***** **** **** * consensus_5436#0 TCAAATAGACAAATTTATAATGGCTGGATCCA-ATTAACCCTACTTAGTACTAAT---CC 169 consensus_5436#1 TAAATGAAAAGAAATGATATTACCTAGTGCAATATGTAACTTAGTTAATAAAAAGGGGTC 166 * ** * * ** * *** * ** * * * ** * * ** *** ** ** * consensus_5436#0 TATACCCAAATCAAGTTTCACCATAATGTCATCCA----AAAGAAAACAAATTAACTAAT 225 consensus_5436#1 CAAAGTACAGTTTACTCTCAATTAAATATTAGCTATTGTAAATATTGAAAATGGATTTAT 226 * * * * * * *** *** * * * * *** * **** * * ** consensus_5436#0 TCTCCATCAATCGCATTAATTTTAGATGT---ATGTGTTGGCGACGTCGGCAAGGTGCCC 282 consensus_5436#1 TTTTTTTAAA--AAAACTATTGTACATATTAAAAATATTGTAAATATTTACAATATGTGT 284 * * * ** * *** ** ** * * * *** * * *** ** consensus_5436#0 AGCCAGCTCCTCCGGCGCGGAGAGCATGGCCATGTGGTCGCCGGCGTCCATCACCCTCAC 342 consensus_5436#1 TTGTAATGTCATATTTTCAAATAA-ACAAATTTATAATGGCTGGATCCAATTAACCCTAC 343 * * * * * * * * * ** ** * ** * ** ** consensus_5436#0 CTC-CGCCACCTCGGTGTTGGCGACCATCCACCGTTGGTGCTCCTGGACGATGGCCATGT 401 consensus_5436#1 TTAGTACTAATA------------------------------------------------ 355 * * * consensus_5436#0 CATTCTCGACCACCACATACACCTTTCTCACGGCGCCGTACCTGTCCTCCCTGAACGCCG 461 consensus_5436#1 ------------------------------------------------------------ consensus_5436#0 ACCGACGTCCCAACTCATCCACGTACAAGGAGCTTGCTCGAACCAAGCTCTTCACAAGCG 521 consensus_5436#1 ------------------------------------------------------------ consensus_5436#0 TGTACTCCTGTGTTCCGGTGAGCTTAACTGCCATACCTTCCTTTCCGGAACTCCGTCCCG 581 consensus_5436#1 ------------------------------------------------------------ consensus_5436#0 AACAGGAATGGAAGCGGGACTCCATTTGCATCTACCACGCTGCTCCACCCTGACCGAATC 641 consensus_5436#1 ------------------------------------------------------------ consensus_5436#0 TTACCAAAGCGTATCGTACCCTAAAACCTATAGAGAAGGCCCACAG 687 consensus_5436#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||