These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1502 fasta sequence [CACGGCGTCGCGGTTTTCCCAAGCTGAGAGTTGTCGTGCGAGAGTGAGGAGCATGGCGATGCTGGGGAGCTCGTCGGCGGTGGTGCTGGAGCTGATGACGATGGGGTACCAGTCGGCGGCGTACCTCGGCGAGCTGCTCCGGGCGGCGTCCCCGGCGCAGGCAGGGGATGAGCAGCAGGAGCTCGCCGCGGAGATCCTCCGCTGCTGCGACCGCGTCATCGCCGAGCTGAACCGGGGAGGAGCCACTGGTGCTACTACCGGCAAGAAGCGGAAGGCGGCGGAGTCCGCCGCCGCCGCCGCCGTGACCTCCCCTTCTCTCCCCGTCACGCCGACCAAAAGAAGGGCGCGTGGCGCGGAGGCGGTGAGGGAGGTGAGGAGCGGCACGACGACGGACGGGTTCATCTGGAGGAAGTACGGGCAGAAGGAGATCAATGGCTGCAAGCACCCGAGGCTCTACTACCGCTGCGCGTTCAGGGGCCAGGGCTGCCTCGCCACGCGGCGGGTGCAGCAGTCGCAGTCGCAGGACGACCCGGCCGCGGCGTTCGTGATCGCCTACTACGGCGAGCACACCTGCGGAGGCGACGCCGCCGCCGCCGCCGCGTGCCGGGACGGGGAACTAATGCCACCTGCCGTCATCAACTCCGGCGCGTCGAGCTTCGCCGCCGCTTGGAACATGGCCTCGCGTGAGCCGGCGTCGTCGCTCGCCGTCGAGCGGAGGAGCTGCGACGGCGACGCTCCCAGCGAGACGTCGCAGGGGTGGTCTCCCTCCTTCTCGTCGGAGGTGGAGCTGGACGTGGTGGGATTCGACCTCGCCGGAGCCGACTCGTCGGCGTCGCCGGTGTGGGAGTTCTTGAATGGCAGCTTCGACTGGGAATTCGTCATCAACTCCCTCTGAATTTTCGATGCTTCGTGATCAGTAGCACACCAGCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAACGCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTTGCGCTTAAGTTAATAGCCTCAGTAGTTCGTCAGATAATCGCACGCACTATTTTAATTCAGGAAGGGATTTAGATTGACAAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACAGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAGCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACTGACGCACTTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAATATCATGCTTGGTACAGGGTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGCTGAAACGAATACTGGTTTT] [+] EMBL AK108657 [CACGGCGTCGCGGTTTTCCCAAGCTGAGAGTTGTCGTGCGAGAGTGAGGAGCATGGCGATGCTGGGGAGCTCGTCGGCGGTGGTGCTGGAGCTGATGACGATGGGGTACCAGTCGGCGGCGTACCTCGGCGAGCTGCTCCGGGCGGCGTCCCCGGCGCAGGCAGGGGATGAGCAGCAGGAGCTCGCCGCGGAGATCCTCCGCTGCTGCGACCGCGTCATCGCCGAGCTGAACCGGGGAGGAGCCACTGGTGCTACTACCGGCAAGAAGCGGAAGGCGGCGGAGTCCGCCGCCGCCGCCGCCGTGACCTCCCCTTCTCTCCCCGTCACGCCGACCAAAAGAAGGGCGCGTGGCGCGGAGGCGGTGAGGGAGGTGAGGAGCGGCACGACGACGGACGGGTTCATCTGGAGGAAGTACGGGCAGAAGGAGATCAATGGCTGCAAGCACCCGAGGCTCTACTACCGCTGCGCGTTCAGGGGCCAGGGCTGCCTCGCCACGCGGCGGGTGCAGCAGTCGCAGTCGCAGGACGACCCGGCCGCGGCGTTCGTGATCGCCTACTACGGCGAGCACACCTGCGGAGGCGACGCCGCCGCCGCCGCCGCGTGCCGGGACGGGGAACTAATGCCACCTGCCGTCATCAACTCCGGCGCGTCGAGCTTCGCCGCCGCTTGGAACATGGCCTCGCGTGAGCCGGCGTCGTCGCTCGCCGTCGAGCGGAGGAGCTGCGACGGCGACGCTCCCAGCGAGACGTCGCAGGGGTGGTCTCCCTCCTTCTCGTCGGAGGTGGAGCTGGACGTGGTGGGATTCGACCTCGCCGGAGCCGACTCGTCGGCGTCGCCGGTGTGGGAGTTCTTGAATGGCAGCTTCGACTGGGAATTCGTCATCAACTCCCTCTGAATTTTCGATGCTTCGTGATCAGTAGCACACCAGCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAACGCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTTGCGCTTAAGTTAATAGCCTCAGTAGTTCGTCAGATAATCGCACGCACTATTTTAATTCAGGAAGGGATTTAGATTGACAAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACAGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAGCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACTGACGCACTTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAATATCATGCTTGGTACAGGGTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGCTGAAACGAATACTGGTTTT] [-] EMBL AW070055 [ gccGAGGTACAGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCAAGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAGCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTTGACGCATAACTGACGCACTTCTGATGGTAACAAAAAACCGGCCACCATGTCCCATGTGAACGAATGGATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAATATCA ] consensusID : consensus_5439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AGCCTTCGTGATCAGTAGCACCACCACCNNCCCCAAGAGTCAGTAGTCTGTGCAAAACGCACAAATTTCACGGGAACTATCGAATTTCCCGCGTTTTGCGCTTAAGTTAATACCCTCAGTAGTTCGTCAAGATAATCGCACGCANCTATTTTAATTCAGGAAGGGATTTAGATTGACCAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACACGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCACAGAAATGGCCAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAAGCATATATGTCCAGAAGACCACCCAAGAGAACACAGACCGTCAGCTTTGACGCATTAACTGACCCACCTTCTGATGGTAACAAAAAACCCGGCCCCCCATGGTCCCCATGGGGAACGAATGGGAATTCCATTATTTAATAATGTAATATAGTGACACCCATGCATATCAGCTGGTACAGGTTAAGACCAATGTTATTTACCCCNTACCACACTGAACGAAAAAAAA] [+] EMBL BI806311 [AGCCTTCGTGATCAGTAGCACCACCACCNNCCCCAAGAGTCAGTAGTCTGTGCAAAACGCACAAATTTCACGGGAACTATCGAATTTCCCGCGTTTTGCGCTTAAGTTAATACCCTCAGTAGTTCGTCAAGATAATCGCACGCANCTATTTTAATTCAGGAAGGGATTTAGATTGACCAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTGACGTTGACGTACACGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCACAGAAATGGCCAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTACTTGCAAAGCATATATGTCCAGAAGACCACCCAAGAGAACACAGACCGTCAGCTTTGACGCATTAACTGACCCACCTTCTGATGGTAACAAAAAACCCGGCCCCCCATGGTCCCCATGGGGAACGAATGGGAATTCCATTATTTAATAATGTAATATAGTGACACCCATGCATATCAGCTGGTACAGGTTAAGACCAATGTTATTTACCCCNTACCACACTGAACGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5439#0 CACGGCGTCGCGGTTTTCCCAAGCTGAGAGTTGTCGTGCGAGAGTGAGGAGCATGGCGAT 60 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GCTGGGGAGCTCGTCGGCGGTGGTGCTGGAGCTGATGACGATGGGGTACCAGTCGGCGGC 120 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GTACCTCGGCGAGCTGCTCCGGGCGGCGTCCCCGGCGCAGGCAGGGGATGAGCAGCAGGA 180 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GCTCGCCGCGGAGATCCTCCGCTGCTGCGACCGCGTCATCGCCGAGCTGAACCGGGGAGG 240 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 AGCCACTGGTGCTACTACCGGCAAGAAGCGGAAGGCGGCGGAGTCCGCCGCCGCCGCCGC 300 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 CGTGACCTCCCCTTCTCTCCCCGTCACGCCGACCAAAAGAAGGGCGCGTGGCGCGGAGGC 360 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GGTGAGGGAGGTGAGGAGCGGCACGACGACGGACGGGTTCATCTGGAGGAAGTACGGGCA 420 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GAAGGAGATCAATGGCTGCAAGCACCCGAGGCTCTACTACCGCTGCGCGTTCAGGGGCCA 480 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GGGCTGCCTCGCCACGCGGCGGGTGCAGCAGTCGCAGTCGCAGGACGACCCGGCCGCGGC 540 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GTTCGTGATCGCCTACTACGGCGAGCACACCTGCGGAGGCGACGCCGCCGCCGCCGCCGC 600 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GTGCCGGGACGGGGAACTAATGCCACCTGCCGTCATCAACTCCGGCGCGTCGAGCTTCGC 660 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 CGCCGCTTGGAACATGGCCTCGCGTGAGCCGGCGTCGTCGCTCGCCGTCGAGCGGAGGAG 720 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 CTGCGACGGCGACGCTCCCAGCGAGACGTCGCAGGGGTGGTCTCCCTCCTTCTCGTCGGA 780 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GGTGGAGCTGGACGTGGTGGGATTCGACCTCGCCGGAGCCGACTCGTCGGCGTCGCCGGT 840 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 GTGGGAGTTCTTGAATGGCAGCTTCGACTGGGAATTCGTCATCAACTCCCTCTGAATTTT 900 consensus_5439#1 ------------------------------------------------------------ consensus_5439#0 CGATGCTTCGTGATCAGTAGCAC-ACCAGCTGCCCCAAGAGTGCAGTAGTCTTTGCAAAA 959 consensus_5439#1 --AGCCTTCGTGATCAGTAGCACCACCACCNNCCCCAAGAGT-CAGTAGTCTGTGCAAAA 57 * ****************** **** * ********** ********* ******* consensus_5439#0 CGCACAAAATTTCGCGGGAACTATCGAATTTCCCGCGTTT-GCGCTTAAGTTAATAGCCT 1018 consensus_5439#1 CGCACAAA-TTTCACGGGAACTATCGAATTTCCCGCGTTTTGCGCTTAAGTTAATACCCT 116 ******** **** ************************** *************** *** consensus_5439#0 CAGTAGTTCGTCA-GATAATCGCACGCAC-TATTTTAATTCAGGAAGGGATTTAGATTGA 1076 consensus_5439#1 CAGTAGTTCGTCAAGATAATCGCACGCANCTATTTTAATTCAGGAAGGGATTTAGATTGA 176 ************* ************** ****************************** consensus_5439#0 CAAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTG 1136 consensus_5439#1 CCAAGTATATTAGGTGAGAGTTAATATGGGAGAATTCGTAATGAAGAGTTGAATGTGTTG 236 * ********************************************************** consensus_5439#0 ACGTTGACGTACA-GGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCA 1195 consensus_5439#1 ACGTTGACGTACACGGGGAAAAACACATGCTAAGAAGAAAAATGGCAGGTGAAAGGGGCA 296 ************* ********************************************** consensus_5439#0 -AGAAATGGCAAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTAC 1254 consensus_5439#1 CAGAAATGGCCAAGCTGAGCAACAGAGCAGGTAATAATAGAGAATTGCTACTCCTACTAC 356 ********* ************************************************* consensus_5439#0 TTGCAA-GCATATATGTCCAGAAGAGCAGCCAAAGAGAACACAAGACCGTCAGCTT-GAC 1312 consensus_5439#1 TTGCAAAGCATATATGTCCAGAAGACCACCCAA-GAGAACACA-GACCGTCAGCTTTGAC 414 ****** ****************** ** **** ********* ************ *** consensus_5439#0 GCAT-AACTGACGCAC-TTCTGATGGTAACAAAAAACCGG--CCACCATG--TCCCATGT 1366 consensus_5439#1 GCATTAACTGACCCACCTTCTGATGGTAACAAAAAACCCGGCCCCCCATGGTCCCCATGG 474 **** ******* *** ********************* * ** ***** ****** consensus_5439#0 G-AACGAATGG--ATTCATTAGTTGTAATAATGGTAATAGTAGTGACACTCAATTGCAAT 1423 consensus_5439#1 GGAACGAATGGGAATTCCATTATT-TAATAATG-TAATA-TAGTGACACCCA--TGCA-T 528 * ********* **** * ** ******** ***** ********* ** **** * consensus_5439#0 ATCATGCTTGGTACAGGGTTAAGGATCAGATGGTTAGTTTAACCACCAATAGCAACAAGC 1483 consensus_5439#1 ATCAG--CTGGTACAGG--TTAAGACCAAT--GTTATTT--ACCCCNTACCACACTGAAC 580 **** ********* * * ** ** **** ** *** * * ** * * consensus_5439#0 TGAAACGAATACTGGTTTT 1502 consensus_5439#1 GAAAAAAAA---------- 589 *** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||