cluster # 544

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 544 cluster # 544 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_544#0 length = 769 sequences # 1

consensus_544#1 length = 732 sequences # 1

consensusID : consensus_544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [AACTCATCCACACAATATCCACCAACGCATCCAGTATCCACAAGCCATCTATCATCAACGCATCGGCCCATCGATCAACACACAACGCAACCATCCATCCTCGACGCAGCCATCCCTCGTCATTAACACATCCATCATCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCCGGCGGTGGCGAGCAGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGCAAGTGTGCCAAACCAAACAAGCAAAATCTCAGGTTGCCTGACCAGGCAAAGCACATGCACTTCTCCGATGTTTCTCAGGCACCTAAATTTCTCAGGCACAGCTCCCAGGGCACCAACCAAACAGGCCCTAGATCGGTGACCGGCGGCCGGCGGCATCCGTGCAGGCGACGGCGGCTATGGACGACCGGCAGCCGGCGGCACTTCGTGTGGGTGACGACGGCTTTCGATCTACGTCAACAAATATCGGCGACCGGCGGCCGGCGGTCTCCCATCGCATGATCGGATCGGCGATTGGCGACTGGGCGCGTGGCGGCAGCACCCGAAGGACGACAGGACGACCGTCGGCCTCACATACACACACGTCGCACGGGCGGCGTGGCGGCAGCGACGGGGAGATAGCAAGNTAGCAAATGCAAGCATGCTAATTAAGCTAATTATGGTGGCAACATGGCCGACCAATCAGAAGACGACACATCATCAAAATGCTNTAGTACCATGCAACAAGTC]

[+] EMBL CA765116             [AACTCATCCACACAATATCCACCAACGCATCCAGTATCCACAAGCCATCTATCATCAACGCATCGGCCCATCGATCAACACACAACGCAACCATCCATCCTCGACGCAGCCATCCCTCGTCATTAACACATCCATCATCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCCGGCGGTGGCGAGCAGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGCAAGTGTGCCAAACCAAACAAGCAAAATCTCAGGTTGCCTGACCAGGCAAAGCACATGCACTTCTCCGATGTTTCTCAGGCACCTAAATTTCTCAGGCACAGCTCCCAGGGCACCAACCAAACAGGCCCTAGATCGGTGACCGGCGGCCGGCGGCATCCGTGCAGGCGACGGCGGCTATGGACGACCGGCAGCCGGCGGCACTTCGTGTGGGTGACGACGGCTTTCGATCTACGTCAACAAATATCGGCGACCGGCGGCCGGCGGTCTCCCATCGCATGATCGGATCGGCGATTGGCGACTGGGCGCGTGGCGGCAGCACCCGAAGGACGACAGGACGACCGTCGGCCTCACATACACACACGTCGCACGGGCGGCGTGGCGGCAGCGACGGGGAGATAGCAAGNTAGCAAATGCAAGCATGCTAATTAAGCTAATTATGGTGGCAACATGGCCGACCAATCAGAAGACGACACATCATCAAAATGCTNTAGTACCATGCAACAAGTC]




>consensus_544#0
AACTCATCCACACAATATCCACCAACGCATCCAGTATCCACAAGCCATCTATCATCAACG
CATCGGCCCATCGATCAACACACAACGCAACCATCCATCCTCGACGCAGCCATCCCTCGT
CATTAACACATCCATCATCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCC
GGCGGTGGCGAGCAGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGAT
GGAATCGATGGTCTTCCAAGGCAAGTGTGCCAAACCAAACAAGCAAAATCTCAGGTTGCC
TGACCAGGCAAAGCACATGCACTTCTCCGATGTTTCTCAGGCACCTAAATTTCTCAGGCA
CAGCTCCCAGGGCACCAACCAAACAGGCCCTAGATCGGTGACCGGCGGCCGGCGGCATCC
GTGCAGGCGACGGCGGCTATGGACGACCGGCAGCCGGCGGCACTTCGTGTGGGTGACGAC
GGCTTTCGATCTACGTCAACAAATATCGGCGACCGGCGGCCGGCGGTCTCCCATCGCATG
ATCGGATCGGCGATTGGCGACTGGGCGCGTGGCGGCAGCACCCGAAGGACGACAGGACGA
CCGTCGGCCTCACATACACACACGTCGCACGGGCGGCGTGGCGGCAGCGACGGGGAGATA
GCAAGNTAGCAAATGCAAGCATGCTAATTAAGCTAATTATGGTGGCAACATGGCCGACCA
ATCAGAAGACGACACATCATCAAAATGCTNTAGTACCATGCAACAAGTC

consensusID : consensus_544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 732
fasta sequence

                              [AACTTCTCCACACATTCATAGACCACGCATCTAGCATCCACAAGCGATCGACACACAACGCAGCCATCCATCCTCGACGCGGCCATCCATCCTCAACACAATCTTCCCTCGTCATCAACACATCCATCATCCAGCACCGGAGCAACAGCGCGTGCGCGGCCGGAGCACACCGACGGTGGCGAGCGGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGTAAAATTAATTAAGATCTGTTTCCTTCTTATTTCATATGTAGCACGTACATACGCATGCATGGAGAGGCATCAACTAGAGTATGGAGTAGTACACTCGTGCGGCCAAGTCGATGTGCGCTGGCGTCATGGCGCCGGATGACGGCAGCGGCTATGGAGAACACCTCTTTTGGTTGGTTCTCGTCGTCAGGGCGCACGGATCGCTGCCGGCGCTCTCACACACACATCTACATCATCATCACAACCATGCATGGAGAACGTGAAGCGAAGACGACGAGACGACCACAAGCAGCTTAATGGAGGTTCTCTTACAGGCCTAAACCTGCGGAGGTAATTAACTGGGAGCTTATCGAGGCCCCAGGAACCAGGAGACCACATCGCACAAGTTAGATCTGTCCAATGACAAATTATGGAGCGCACATACATATATATTACATTGGGAATTTATATTTATGATCNTTTAAGATTAATAAAGAGGATGG]

[+] EMBL CA765200             [AACTTCTCCACACATTCATAGACCACGCATCTAGCATCCACAAGCGATCGACACACAACGCAGCCATCCATCCTCGACGCGGCCATCCATCCTCAACACAATCTTCCCTCGTCATCAACACATCCATCATCCAGCACCGGAGCAACAGCGCGTGCGCGGCCGGAGCACACCGACGGTGGCGAGCGGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGATGGTCTTCCAAGGTAAAATTAATTAAGATCTGTTTCCTTCTTATTTCATATGTAGCACGTACATACGCATGCATGGAGAGGCATCAACTAGAGTATGGAGTAGTACACTCGTGCGGCCAAGTCGATGTGCGCTGGCGTCATGGCGCCGGATGACGGCAGCGGCTATGGAGAACACCTCTTTTGGTTGGTTCTCGTCGTCAGGGCGCACGGATCGCTGCCGGCGCTCTCACACACACATCTACATCATCATCACAACCATGCATGGAGAACGTGAAGCGAAGACGACGAGACGACCACAAGCAGCTTAATGGAGGTTCTCTTACAGGCCTAAACCTGCGGAGGTAATTAACTGGGAGCTTATCGAGGCCCCAGGAACCAGGAGACCACATCGCACAAGTTAGATCTGTCCAATGACAAATTATGGAGCGCACATACATATATATTACATTGGGAATTTATATTTATGATCNTTTAAGATTAATAAAGAGGATGG]




>consensus_544#1
AACTTCTCCACACATTCATAGACCACGCATCTAGCATCCACAAGCGATCGACACACAACG
CAGCCATCCATCCTCGACGCGGCCATCCATCCTCAACACAATCTTCCCTCGTCATCAACA
CATCCATCATCCAGCACCGGAGCAACAGCGCGTGCGCGGCCGGAGCACACCGACGGTGGC
GAGCGGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGATGGAATCGAT
GGTCTTCCAAGGTAAAATTAATTAAGATCTGTTTCCTTCTTATTTCATATGTAGCACGTA
CATACGCATGCATGGAGAGGCATCAACTAGAGTATGGAGTAGTACACTCGTGCGGCCAAG
TCGATGTGCGCTGGCGTCATGGCGCCGGATGACGGCAGCGGCTATGGAGAACACCTCTTT
TGGTTGGTTCTCGTCGTCAGGGCGCACGGATCGCTGCCGGCGCTCTCACACACACATCTA
CATCATCATCACAACCATGCATGGAGAACGTGAAGCGAAGACGACGAGACGACCACAAGC
AGCTTAATGGAGGTTCTCTTACAGGCCTAAACCTGCGGAGGTAATTAACTGGGAGCTTAT
CGAGGCCCCAGGAACCAGGAGACCACATCGCACAAGTTAGATCTGTCCAATGACAAATTA
TGGAGCGCACATACATATATATTACATTGGGAATTTATATTTATGATCNTTTAAGATTAA
TAAAGAGGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_544#0      AACTCATCCACACAATATCCACCAACGCATCCAGTATCCACAAGCCATCTATCATCAACG 60
consensus_544#1      AACTTCTCCACACATTCATAGACCACGCATCTAGCATCCACAAGCGATCGACACACAACG 60
                     ****  ******** *      * ******* ** ********** *** *    *****

consensus_544#0      CATCGGCCCATCGATCAACACACAACGCAACCATCCATCCTCGACGCAGCCATCCCTCGT 120
consensus_544#1      CAGCCATCCATC--------CTCGACGCGGCCATCCATCCTCAACACAATCTTCCCTCGT 112
                     ** *   *****        * * ****  ************ ** **  * ********

consensus_544#0      CATTAACACATCCATCATCCAGCACCGAAGCGACAGCACACGCGCGGCCGGAGCACACCC 180
consensus_544#1      CATCAACACATCCATCATCCAGCACCGGAGCAACAGCGCGTGCGCGGCCGGAGCACACC- 171
                     *** *********************** *** ***** *  ****************** 

consensus_544#0      GGCGGTGGCGAGCAGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGAT 240
consensus_544#1      GACGGTGGCGAGCGGCTTCGGACGAACCGGCGTCCGGCAGGGGAGCACGAGGAGGGAGAT 231
                     * *********** **********************************************

consensus_544#0      GGAATCGATGGTCTTCCAAGGCAAGTGTGCCAAACCAAACAAGCAAAATCTCAGGTTGCC 300
consensus_544#1      GGAATCGATGGTCTTCCAAGGTAA------------AATTAATTAAGATCT---GTTTCC 276
                     ********************* **            **  **  ** ****   *** **

consensus_544#0      TGACCAGGCAAAGCACATGCACTTCTCCGATGTTTCTCAGGCACCTAAATTTCTCAGGCA 360
consensus_544#1      TTCTTATTT----CATATGTAGCACGTACATA---CGCATGCATGGAGAGGCATCAACTA 329
                     *    *       ** *** *   *    **    * ** ***   * *    ***   *

consensus_544#0      CAGCTCCCAGGGCACCAACCAAACAGGCCCTAGATCGGTGACCGGCGGCCGGCGGCATCC 420
consensus_544#1      GAGTATGGAGTAGTACACTCGTGCGG---CCAAGTCGATGTGCGCTGGC-GTCATGGCGC 385
                      **     **     **  *   * *   * *  *** **  **  *** * *      *

consensus_544#0      GTGCAGGCGACGGCGGCTATGGACGAC-CGGCAGCCGGCGGCACTTCGT-GTGGGTGACG 478
consensus_544#1      CGGATGACGGCAGCGGCTATGGAGAACACCTCTTTTGGTTGGTTCTCGTCGTCAGGGCGC 445
                       *  * ** * ***********  ** *  *    **  *    **** **  * *   

consensus_544#0      ACGGCTTTCGATCTACGTCAACAAATATCGGCGACCGGCGGC-CGGCGGTCTCCCATCGC 537
consensus_544#1      ACGGATCGCTGCCGGCGCTCTCACACACACATCTACATCATCATCACAACCATGCATGGA 505
                     **** *  *   *  **    ** * *        *  *  *    *   *   *** * 

consensus_544#0      ATGATCGGATCGGCGATTGGCGACTGGGCGCGTGGCGGCAGCACCCGAAGGACGACAGGA 597
consensus_544#1      GAACGTGAAGCGAAGA----CGACGAGACGACCACAAGCAGCTTAATGGAGGTTCTCTTA 561
                           * * **  **    ****  * **       *****        *        *

consensus_544#0      CGACCGTCGGCCTCACATACACACACGTCGCACGGGCGGCGTGGCGGCAGCGACGGGGAG 657
consensus_544#1      CAGGCCTAAACCTGCGGAGGTAATTAACTGGGAGCTTATCGAGGCCCCAGGAACCAGGAG 621
                     *   * *   ***         *      *   *     ** ***  ***  **  ****

consensus_544#0      ATAGCAAGNTAGCAAATGCAAGCATGCTAATTAAGCTAATTATGGTGGCAACATGGCCGA 717
consensus_544#1      ACCACATCGCA-CAAGTTAGATCTGTCCAATGA--CAAATTATGGAGCGCACATACATAT 678
                     *   **    * *** *   * *   * *** *  * ******** *   ****      

consensus_544#0      CCAATCAGAAGACGACACATCATCAAAATGCTNTAGTACCATGCAACAAGTC-- 769
consensus_544#1      ATATTACATTGGGAATTTATATTTATGATCNTTTAAGATTAATAAAGAGGATGG 732
                       * *     *   *   **  * *  **  * **  *  *   ** * *