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Oryza sativa
cluster # 5441 cluster # 5441       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5441#0 length = 1717 sequences # 3  

consensusID : consensus_5441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1717
fasta sequence
                              [TTCCCAAACCCTAAAGCCCTCCTCCCCTTCCCGTGGCGATTCGCCGGTCCGTCCCCCAAGTCTAGGGTTTATGTTCGCTTTCTCCCCACGCATTCCTCCCACCCGCGGCGCTCCCTGATCTGGTCAAGCCCACCAGAATCCGCTCTCCAGAGTTGGTGGGGGCGGAGGGGGAAGGGAGGGGCGGCGGATGCAGACGGAGGCGAGAGTGGGGATGGCCGCCGCAACGATGGACAGCGGCGCCGCCGCCGCGGCCGCTCGGAGGTACTCGACGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCTGCACCACCACCAGCCGCAGCTCGGGACGGTGCCCCACCTCCTTGCCGGCGGCGTCGCGGGCGCCGTCAGCAAGACTTGTACCGCGCCTCTCGCCCGCCTCACTATTCTATTCCAGGTGCAAGGAATGCATTCAGATGTGGCTACCATGCGGAAGACTAGCATATGGCGTGAGGCATCCCGCATTGTCTACGAAGAAGGCTTCCGAGCATTCTGGAAAGGAAATCTTGTAACTATTGCACACCGGTTACCTTACTCCTCAATTAGCTTTTACACATATGAGAGGTACAAGAACCTGCTACAAATGATACCTGTTCTTGACAGGAATGGTGGATTTGGTGCAGATGTTGGTGTTAGATTGATAGGTGGTGGTTTGTCTGGAATAACAGCAGCTTCGATGACATATCCCTTGGACTTAGTACGGACTCGTCTTGCTGCTCAGACGAACACTGCTTACTACAGGGGCATATCTCATGCTCTTTACGCCATCTGCAGAGACGAGGGTGTCAAGGGGCTCTACAAGGGCCTTGGTGCCACTTTGCTGGGAGTAGGTCCCAGCATAGCAATAAGCTTCTGTGTCTATGAGACATTGCGATCTCATTGGCAAATAGAGAGGCCATATGATTCCCCTGTTCTGATCAGTTTGGCTTGTGGAAGTCTTTCAGGAATTGCATCCTCAACTATTACATTTCCGTTGGATCTAGTAAGACGCCGCATGCAGTTGGAAGGCGCAGCTGGAAGGGCCCGTGTCTACCAAACTGGACTTTTTGGAACATTTGGGCATATCGTTCGCACAGAAAGTTTAAGAGGATTGTATAGAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTA-GCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATCTAGATGGTACTAGGTTTTTAAGTTTATAATATCAT-GGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCGCTGCCATAGGTCTTCAAATTTCTGTCCACCAGTTTTAGTGTATGTTAACAGTTTCAGTTTTGTAATGGTACATGAGGCCATTGTCTTCAG-CTCTACAATACTATTGAAAGATGGCCTCCAAGATGATCTGTTTATCCATGTTGTCCTAGTGAGCTTATTACAATTCATAAGTGAGTTCGGCTACATTATTGNGAATGGCCTTGTCATTCAAATTTCCTGGTAGTGAGCAAGGAACGTTGTNTCCCTCTTTATTGGACGATAGTTTCGNTAATGCGGCCTCTTCTTGGAT]

[+] EMBL AK071979             [TTCCCAAACCCTAAAGCCCTCCTCCCCTTCCCGTGGCGATTCGCCGGTCCGTCCCCCAAGTCTAGGGTTTATGTTCGCTTTCTCCCCACGCATTCCTCCCACCCGCGGCGCTCCCTGATCTGGTCAAGCCCACCAGAATCCGCTCTCCAGAGTTGGTGGGGGCGGAGGGGGAAGGGAGGGGCGGCGGATGCAGACGGAGGCGAGAGTGGGGATGGCCGCCGCAACGATGGACAGCGGCGCCGCCGCCGCGGCCGCTCGGAGGTACTCGACGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCTGCACCACCACCAGCCGCAGCTCGGGACGGTGCCCCACCTCCTTGCCGGCGGCGTCGCGGGCGCCGTCAGCAAGACTTGTACCGCGCCTCTCGCCCGCCTCACTATTCTATTCCAGGTGCAAGGAATGCATTCAGATGTGGCTACCATGCGGAAGACTAGCATATGGCGTGAGGCATCCCGCATTGTCTACGAAGAAGGCTTCCGAGCATTCTGGAAAGGAAATCTTGTAACTATTGCACACCGGTTACCTTACTCCTCAATTAGCTTTTACACATATGAGAGGTACAAGAACCTGCTACAAATGATACCTGTTCTTGACAGGAATGGTGGATTTGGTGCAGATGTTGGTGTTAGATTGATAGGTGGTGGTTTGTCTGGAATAACAGCAGCTTCGATGACATATCCCTTGGACTTAGTACGGACTCGTCTTGCTGCTCAGACGAACACTGCTTACTACAGGGGCATATCTCATGCTCTTTACGCCATCTGCAGAGACGAGGGTGTCAAGGGGCTCTACAAGGGCCTTGGTGCCACTTTGCTGGGAGTAGGTCCCAGCATAGCAATAAGCTTCTGTGTCTATGAGACATTGCGATCTCATTGGCAAATAGAGAGGCCATATGATTCCCCTGTTCTGATCAGTTTGGCTTGTGGAAGTCTTTCAGGAATTGCATCCTCAACTATTACATTTCCGTTGGATCTAGTAAGACGCCGCATGCAGTTGGAAGGCGCAGCTGGAAGGGCCCGTGTCTACCAAACTGGACTTTTTGGAACATTTGGGCATATCGTTCGCACAGAAAGTTTAAGAGGATTGTATAGAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTA GCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATCTAGATGGTACTAGGTTTTTAAGTTTATAATATCAT GGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCGCTGCCATAGGTCTTCAAATTTCTGTCCACCAGTTTTAGTGTATGTTAACAGTTTCAGTTTTGTAATGGTACATGAGGCCATTGTCTTCAG CTCTACAATACTATTGAAAGATGGCCTCCAAGATGATCTGTTTATCCATGTTGTCCTAG                                                                                                                                            ]
[+] EMBL AK105349             [                    CCTCCCCTTCCCGTGGCGATTCGCCGGTCCGTCCCCCAAGTCTAGGGTTTATGTTCGCTTTCTCCCCACGCATTCCTCCCACCCGCGGCGCTCCCTGATCTGGTCAAGCCCACCAGAATCCGCTCTCCAGAGTTGGTGGGGGCGGAGGGGGAAGGGAGGGGCGGCGGATGCAGACGGAGGCGAGAGTGGGGATGGCCGCCGCAACGATGGACAGCGGCGCCGCCGCCGCGGCCGCTCGGAGGTACTCGACGCAGCAGCAGCAGCAGCAGCCGCCGCCGCCGCAGCTGCACCACCACCAGCCGCAGCTCGGGACGGTGCCCCACCTCCTTGCCGGCGGCGTCGCGGGCGCCGTCAGCAAGACTTGTACCGCGCCTCTCGCCCGCCTCACTATTCTATTCCAGGTGCAAGGAATGCATTCAGATGTGGCTACCATGCGGAAGACTAGCATATGGCGTGAGGCATCCCGCATTGTCTACGAAGAAGGCTTCCGAGCATTCTGGAAAGGAAATCTTGTAACTATTGCACACCGGTTACCTTACTCCTCAATTAGCTTTTACACATATGAGAGGTACAAGAACCTGCTACAAATGATACCTGGTCTTGACAGGAATGGTGGATTTGGTGCAGATGTTGGTGTTAGATTGATAGGTGGTGGTTTGTCTGGAATAACAGCAGCTTCGATGACATATCCCTTGGACTTAGTACGGACTCGTCTTGCTGCTCAGACGAACACTGCTTACTACAGGGGCATATCTCATGCTCTTTACGCCATCTGCAGAGACGAGGGTGTCAAGGGGCTCTACAAGGGCCTTGGTGCCACTTTGCTGGGAGTAGGTCCCAGCATAGCAATAAGCTTCTGTGTCTATGAGACATTGCGATCTCATTGGCAAATAGAGAGGCCATATGATTCCCCTGTTCTGATCAGTTTGGCTTGTGGAAGTCTTTCAGGAATTGCATCCTCAACTATTACATTTCCGTTGGATCTAGTAAGACGCCGCATGCAGTTGGAAGGCGCAGCTGGAAGGGCCCGTGTCTACCAAACTGGACTTTTTGGAACATTTGGGCATATCGTTCGCACAGAAAGTTTAAGAGGATTGTATAGAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTA GCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATCTAGATGGTACTAGGTTTTTAAGTTTATAATATCAT GGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCGCTGCCATAGGTCTTCAAATTTCTGTCCACCAGTTTTAGTGTATGTTAACAGTTTCAGTTTTGTAATGATACATGAGGCCATTGTCTTCAG CTCTACAATACTATTGAAA                                                                                                                                                                                    ]
[+] EMBL CB096567             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAGGAATTTTGCCCGAGTACTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCATCCTCACGGAACTGGCATCAGATGATTANGCTGTCCAACATTTGTCACGCTTGACAATTTTGATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCATATGTTAGGATTTAGATGGTACTAGGTTTTTAAGTTTATAATATCATCGGAATGGAAGGATATTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCACTGCCATAGGTCCTCAAATCTCTGTCCACCAGTTTTAGTGTATGCTAACAGTTTCAGTTTTGTAATGGTACATGAGGCCATTGTCTTCAGCCTCTACAATACTATTGAAAGATGGCCTCCAAGATGATCTGNTTATCAATGTTGTCCTAGTGAGCTTATTACAATTCATAAGTGAGTTCGGCTACATTATTGNGAATGGCCTTGTCATTCAAATTTCCTGGTAGTGAGCAAGGAACGTTGTNTCCCTCTTTATTGGACGATAGTTTCGNTAATGCGGCCTCTTCTTGGAT]


>consensus_5441#0 TTCCCAAACCCTAAAGCCCTCCTCCCCTTCCCGTGGCGATTCGCCGGTCCGTCCCCCAAG TCTAGGGTTTATGTTCGCTTTCTCCCCACGCATTCCTCCCACCCGCGGCGCTCCCTGATC TGGTCAAGCCCACCAGAATCCGCTCTCCAGAGTTGGTGGGGGCGGAGGGGGAAGGGAGGG GCGGCGGATGCAGACGGAGGCGAGAGTGGGGATGGCCGCCGCAACGATGGACAGCGGCGC CGCCGCCGCGGCCGCTCGGAGGTACTCGACGCAGCAGCAGCAGCAGCAGCCGCCGCCGCC GCAGCTGCACCACCACCAGCCGCAGCTCGGGACGGTGCCCCACCTCCTTGCCGGCGGCGT CGCGGGCGCCGTCAGCAAGACTTGTACCGCGCCTCTCGCCCGCCTCACTATTCTATTCCA GGTGCAAGGAATGCATTCAGATGTGGCTACCATGCGGAAGACTAGCATATGGCGTGAGGC ATCCCGCATTGTCTACGAAGAAGGCTTCCGAGCATTCTGGAAAGGAAATCTTGTAACTAT TGCACACCGGTTACCTTACTCCTCAATTAGCTTTTACACATATGAGAGGTACAAGAACCT GCTACAAATGATACCTGTTCTTGACAGGAATGGTGGATTTGGTGCAGATGTTGGTGTTAG ATTGATAGGTGGTGGTTTGTCTGGAATAACAGCAGCTTCGATGACATATCCCTTGGACTT AGTACGGACTCGTCTTGCTGCTCAGACGAACACTGCTTACTACAGGGGCATATCTCATGC TCTTTACGCCATCTGCAGAGACGAGGGTGTCAAGGGGCTCTACAAGGGCCTTGGTGCCAC TTTGCTGGGAGTAGGTCCCAGCATAGCAATAAGCTTCTGTGTCTATGAGACATTGCGATC TCATTGGCAAATAGAGAGGCCATATGATTCCCCTGTTCTGATCAGTTTGGCTTGTGGAAG TCTTTCAGGAATTGCATCCTCAACTATTACATTTCCGTTGGATCTAGTAAGACGCCGCAT GCAGTTGGAAGGCGCAGCTGGAAGGGCCCGTGTCTACCAAACTGGACTTTTTGGAACATT TGGGCATATCGTTCGCACAGAAAGTTTAAGAGGATTGTATAGAGGAATTTTGCCCGAGTA CTGCAAAGTGGTCCCAAGTGTTGGCATTGTTTTTATGACGTATGAGACGCTGAAGTCCAT CCTCACGGAACTGGCATCAGATGATTAGCTGTCCAACATTTGTCACGCTTGACAATTTTG ATGTTTGGGCCAGAATAACACTTGAGGCTGATTAGAGCGAGAAAAATGACTTTGTAGCAT ATGTTAGGATCTAGATGGTACTAGGTTTTTAAGTTTATAATATCATGGAATGGAAGGATA TTCATATGGTTACAGATTTTCTTGTAGTGCATGGTAAAAGAAGAGCCGCTGCCATAGGTC TTCAAATTTCTGTCCACCAGTTTTAGTGTATGTTAACAGTTTCAGTTTTGTAATGGTACA TGAGGCCATTGTCTTCAGCTCTACAATACTATTGAAAGATGGCCTCCAAGATGATCTGTT TATCCATGTTGTCCTAGTGAGCTTATTACAATTCATAAGTGAGTTCGGCTACATTATTGN GAATGGCCTTGTCATTCAAATTTCCTGGTAGTGAGCAAGGAACGTTGTNTCCCTCTTTAT TGGACGATAGTTTCGNTAATGCGGCCTCTTCTTGGAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)