cluster # 5452

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Oryza sativa
cluster # 5452 cluster # 5452 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5452#0 length = 342 sequences # 2

consensus_5452#1 length = 296 sequences # 1

consensusID : consensus_5452#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 342
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAACCTCCGGGGGGAAATCCTTTTAATTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATTTAAAAAACAGCGGGTTGTTGCACAAAAGGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGCAACATTTTTTCCAGAAAAATCGGGGCCTTTTTTTACTCCTTCACCCCATGTCAGGGCCCAGGGGCAAATTCTTTAAAACCTGCGGGACTATCCCTTTTAGGGGGGGTTAAT]

[+] EMBL CF310306             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAACCTCCGGGGGGAAATCCTTTTAATTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATTTAAAAAACAGCGGGTTGTTGCACAAAAGGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGCAACATTTTTTCCAGAAAAATCGGGGCCTTTTTTTACTCCTTCACCCCATGTCAGGGCCCAGGGGCAAATTCTTTAAAACCTGCGGGACTATCCCTTTTAGGGGGGGTTAAT]
[+] EMBL CF307956             [   TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAAACTACGGGGGGAAATCCTTTTATTTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATTTAAAAAACAGAGGGTTGTTGCAAAAAACGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGAAACATTTTTTCCAAAAAAATCGGGGCCT                                                                                   ]




>consensus_5452#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAACCT
CCGGGGGGAAATCCTTTTAATTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATT
TAAAAAACAGCGGGTTGTTGCACAAAAGGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCG
TTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGCAACATTTTT
TCCAGAAAAATCGGGGCCTTTTTTTACTCCTTCACCCCATGTCAGGGCCCAGGGGCAAAT
TCTTTAAAACCTGCGGGACTATCCCTTTTAGGGGGGGTTAAT

consensusID : consensus_5452#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAACTACAGGGGCAAATCCTTTTAATTAAACATAAAAACTTGTTTAAACAACAACCTGCCACATTTAAAAAACAGAAGGTTGTTGCACAAAACGGGGTCCCCGGTTCTTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATACCCCCAAACAACCAAAAACTTTCGGCAACATTTTTTCCAAAAAAATCGGGGCCTTTTTCTTTTTTTTCCCAAGCAAGCTTTTTTTGAAAAAGGGATTTTTTTT]

[+] EMBL CF298577             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAACTACAGGGGCAAATCCTTTTAATTAAACATAAAAACTTGTTTAAACAACAACCTGCCACATTTAAAAAACAGAAGGTTGTTGCACAAAACGGGGTCCCCGGTTCTTTTTTTTGGGGGGTTCGTTCCCCCCTTCAAATTGTTTTAATACCCCCAAACAACCAAAAACTTTCGGCAACATTTTTTCCAAAAAAATCGGGGCCTTTTTCTTTTTTTTCCCAAGCAAGCTTTTTTTGAAAAAGGGATTTTTTTT]




>consensus_5452#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAACTACAGGGGCAAAT
CCTTTTAATTAAACATAAAAACTTGTTTAAACAACAACCTGCCACATTTAAAAAACAGAA
GGTTGTTGCACAAAACGGGGTCCCCGGTTCTTTTTTTTGGGGGGTTCGTTCCCCCCTTCA
AATTGTTTTAATACCCCCAAACAACCAAAAACTTTCGGCAACATTTTTTCCAAAAAAATC
GGGGCCTTTTTCTTTTTTTTCCCAAGCAAGCTTTTTTTGAAAAAGGGATTTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5452#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCAACCT 60
consensus_5452#1      ------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCAAACT 48
                                  *************************************** ***** **

consensus_5452#0      CCGGGGGGAAATCCTTTTAATTAAACATAAAAATTGGTTTAAACAACACCCTGCCAAATT 120
consensus_5452#1      ACAGGGGCAAATCCTTTTAATTAAACATAAAAACTTGTTTAAACAACAACCTGCCACATT 108
                       * **** ************************* * ************ ******* ***

consensus_5452#0      TAAAAAACAGCGGGTTGTTGCACAAAAGGGGGTCCCCGGTTATTTTTTTTGGGGGGTTCG 180
consensus_5452#1      TAAAAAACAGAAGGTTGTTGCACAAAACGGGGTCCCCGGTTCTTTTTTTTGGGGGGTTCG 168
                      **********  *************** ************* ******************

consensus_5452#0      TTCCCCCCTTCAAATTGTTTTAATCCCCCCAAACAACCAAAAACTTTGGGCAACATTTTT 240
consensus_5452#1      TTCCCCCCTTCAAATTGTTTTAATACCCCCAAACAACCAAAAACTTTCGGCAACATTTTT 228
                      ************************ ********************** ************

consensus_5452#0      TCCAGAAAAATCGGGGCCTTTTTTTACTCCTTCACCC-CATGTCAGGGCCCAGGGGCAAA 299
consensus_5452#1      TCCAAAAAAATCGGGGCCTTTTTCTTTTTTTTCCCAAGCAAGCTTTTTTTGAAAAAGGGA 288
                      **** ****************** *  *  *** *   ** *         *       *

consensus_5452#0      TTCTTTAAAACCTGCGGGACTATCCCTTTTAGGGGGGGTTAAT 342
consensus_5452#1      TTTTTTTT----------------------------------- 296
                      ** ***