These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [CGCGTGCCGGTGGAAGACATGCGACCCGACCGACGAGGAGTATCTGCCAGGAGCAAAGCCGAGTATGAAGACTTATAGATGGTTGTCGTGGCCTGAGCACCCAAGCCTCAGCATGTGGAAATGAAGTTGAGTGTGCCTAGGTGTCTGTTGCCTAGTGGCGTAGTTTGCTTTGTGCGCTTGAGTGTTGCTCTGGCGCTGGTGTCGCTTTTGGCGCCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCTGTCCATGATGGCACTTATGTAAAGACTACTACCCAGTGATGTAATAAACAGTTTACTTNGATTCCACANNTTAAAAAA] [+] EMBL BM038603 [CGCGTGCCGGTGGAAGACATGCGACCCGACCGACGAGGAGTATCTGCCAGGAGCAAAGCCGAGTATGAAGACTTATAGATGGTTGTCGTGGCCTGAGCACCCAAGCCTCAGCATGTGGAAATGAAGTTGAGTGTGCCTAGGTGTCTGTTGCCTAGTGGCGTAGTTTGCTTTGTGCGCTTGAGTGTTGCTCTGGCGCTGGTGTCGCTTTTGGCGCCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCTGTCCATGATGGCACTTATGTAAAGACTACTACCCAGTGATGTAATAAACAGTTTACTTNGATTCCACANNTTAAAAAA] consensusID : consensus_5454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [CTGAGGCACACACAAAGCACTGCGCCATGGTGGAAATGAAAGTATTTTGCACTGAGTGTGCTTGTGGCACTGAGGTGGCAGTGAGTTGGCTGTGTGGTGCAGCTGTGAGGTGTGTGCTGCTGGCAGCTGTTCGCTTTTGCGCACGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCATGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTG] [+] EMBL BI809528 [CTGAGGCACACACAAAGCACTGCGCCATGGTGGAAATGAAAGTATTTTGCACTGAGTGTGCTTGTGGCACTGAGGTGGCAGTGAGTTGGCTGTGTGGTGCAGCTGTGAGGTGTGTGCTGCTGGCAGCTGTTCGCTTTTGCGCACGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCATGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTG] consensusID : consensus_5454#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [CCCCAAGCCTCGCATGTGAAATAAGTTAGGTTGCACTAGGTTCTTTGCCTAGTGCGTAGTTGCATTTGTCGCTTTAGTTTCTCTGCAGCTGTTCGCATTTTGCAGCACGTCGCTTTTATGGTTTTCTGTAATTTGTGTTGCTCATCTATGGGCACTGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCAAAAAAAAA] [+] EMBL BI813624 [CCCCAAGCCTCGCATGTGAAATAAGTTAGGTTGCACTAGGTTCTTTGCCTAGTGCGTAGTTGCATTTGTCGCTTTAGTTTCTCTGCAGCTGTTCGCATTTTGCAGCACGTCGCTTTTATGGTTTTCTGTAATTTGTGTTGCTCATCTATGGGCACTGTCCATGATGGCAACTTATGTAAAGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5454#0 CGCGTGCCGGTGGAAGACATGCGACCCGACCGACGAGGAGTATCTGCCAGGAGCAAAGCC 60 consensus_5454#2 ------------------------------------------------------------ consensus_5454#1 ------------------------------------------------------------ consensus_5454#0 GAGTATGAAGACTTATAGATGGTTGTCGTGGCCTGAGCACCCAAGCCTCAGCAT----GT 116 consensus_5454#2 --------------------------------------CCCCAAGCCTC-GCAT----GT 17 consensus_5454#1 -----------------------------CTGAGGCACACACAAAGCACTGCGCCATGGT 31 * *** * * ** ** consensus_5454#0 GGAAATGAAGTTGAGTGTGCCTAGGTGT--CTGTTGCCTAGTGGCGTAGTTTGCTT---T 171 consensus_5454#2 GAAAT--AAGTTAGGTTGCACTAGGT-T--CT-TTGCCTAGTG-CGTAGTTGCATT---T 67 consensus_5454#1 GGAAATGAAAGTATTTTGCACTGAGTGTGCTTGTGGCACTGAGGTGGCAGTGAGTTGGCT 91 * ** ** * * ** ** * * * ** * * * * ** * consensus_5454#0 GTGCGCTTGAGTG----------TTGCTCTG-GCGCTGGTGTCGCTTTTGGCGCCGTCGC 220 consensus_5454#2 GT-CGCTTTAGTT----------T--CTCTG-CAGCTGTTCGCATTTTGCAGCACGTCGC 113 consensus_5454#1 GTGTGGTGCAGCTGTGAGGTGTGTGCTGCTGGCAGCTGTTCGC-TTTTGC-GCACGTCGC 149 ** * * ** * *** **** * * *** ****** consensus_5454#0 TTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGC-CTGTCCATGATGGCA-CT 278 consensus_5454#2 TTTTATGGTTTTCTGTAAT-TTGTGTTGCTCATCTATGGGCACTGTCCATGATGGCAACT 172 consensus_5454#1 TTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCATGTCCATGATGGCAACT 209 ******************* ********************* ************** ** consensus_5454#0 TATGTAAAGACTACTACCCAGTGATGTAATAAA-CAGTTTACTTNGATTCCACANNTTAA 337 consensus_5454#2 TATGTAAAGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCAAAAAAAAA- 231 consensus_5454#1 TATGTAAAGACTACTACCCAGTG------------------------------------- 232 *********************** consensus_5454#0 AAAA 341 consensus_5454#2 ---- consensus_5454#1 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||