cluster # 5456

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Oryza sativa
cluster # 5456 cluster # 5456 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5456#0 length = 900 sequences # 1

consensus_5456#1 length = 208 sequences # 2

consensusID : consensus_5456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 900
fasta sequence

                              [GCCGCGGCGATTCCCCCACACGGCACCACCAAATCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGCCGCCGCTTGCACCGGTTGCTCCGGGCGGGTGTCGGGATGCTGGCGAGGGTCTCCCGCCTGGGGCTCCATGCCCTGCGCCGCGCCACTGCGCCAGGTCAAAATTCACTCGCTTCAAGGAGGCACGAAGCAGAAGCTGTTACCTCTCATGTGAACCATTTGGGGAAGACTTTCTTCTGTTCGAACACAAATGCTACATCCAGTGATAGGAGCAGCGAGTCAGAAGCTAAGATATCTGTGACTTTTGTTGATAAGGATGGCGAGGAAAAGCTTGTTAAAGTACCTATAGGAATGTCAATGCTAGAGGCAGCACATGAGAATGACATAGAACTTGAAGGGGCATGTGAGGGCTCTCTTGCATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCCTGTGGATGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCTTGGTTGCCAAGTGATTGCAAGCCCTGAGCTTGATGGAATGCGATTGGCACTGCCATCAGCTACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGATTTCAACAAAATCATGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACAAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAATATGGC]

[+] EMBL AK107833             [GCCGCGGCGATTCCCCCACACGGCACCACCAAATCCGCCGCCGCCGCCGCCGTCGCCGTCGCCGCCGCCGCTTGCACCGGTTGCTCCGGGCGGGTGTCGGGATGCTGGCGAGGGTCTCCCGCCTGGGGCTCCATGCCCTGCGCCGCGCCACTGCGCCAGGTCAAAATTCACTCGCTTCAAGGAGGCACGAAGCAGAAGCTGTTACCTCTCATGTGAACCATTTGGGGAAGACTTTCTTCTGTTCGAACACAAATGCTACATCCAGTGATAGGAGCAGCGAGTCAGAAGCTAAGATATCTGTGACTTTTGTTGATAAGGATGGCGAGGAAAAGCTTGTTAAAGTACCTATAGGAATGTCAATGCTAGAGGCAGCACATGAGAATGACATAGAACTTGAAGGGGCATGTGAGGGCTCTCTTGCATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCCTGTGGATGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCTTGGTTGCCAAGTGATTGCAAGCCCTGAGCTTGATGGAATGCGATTGGCACTGCCATCAGCTACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGATTTCAACAAAATCATGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACAAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAATATGGC]




>consensus_5456#0
GCCGCGGCGATTCCCCCACACGGCACCACCAAATCCGCCGCCGCCGCCGCCGTCGCCGTC
GCCGCCGCCGCTTGCACCGGTTGCTCCGGGCGGGTGTCGGGATGCTGGCGAGGGTCTCCC
GCCTGGGGCTCCATGCCCTGCGCCGCGCCACTGCGCCAGGTCAAAATTCACTCGCTTCAA
GGAGGCACGAAGCAGAAGCTGTTACCTCTCATGTGAACCATTTGGGGAAGACTTTCTTCT
GTTCGAACACAAATGCTACATCCAGTGATAGGAGCAGCGAGTCAGAAGCTAAGATATCTG
TGACTTTTGTTGATAAGGATGGCGAGGAAAAGCTTGTTAAAGTACCTATAGGAATGTCAA
TGCTAGAGGCAGCACATGAGAATGACATAGAACTTGAAGGGGCATGTGAGGGCTCTCTTG
CATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCC
TGTGGATGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCT
TGGTTGCCAAGTGATTGCAAGCCCTGAGCTTGATGGAATGCGATTGGCACTGCCATCAGC
TACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGATTTCAACAAAATCA
TGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTA
TCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGAT
AACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACA
AGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAATATGGC

consensusID : consensus_5456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 208
fasta sequence

                              [ACACTGCATGGACTGAAGGAGTAGAAAGCTTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACGAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAAA]

[+] EMBL CF321426             [ACACTGCATGGACTGAAGGAGTAGAAAGCTTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACGAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAA ]
[-] EMBL CF321427             [        TGGACTGAAGGAGTAGAAAGCTTATCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACGAGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAAA]




>consensus_5456#1
ACACTGCATGGACTGAAGGAGTAGAAAGCTTATCCTCAATCTTGAATTTCTATTCTACAG
AAAACAAACACTTAATATCTATGATAATTGATAACTTCCCTTCTCTCTTTTTTCGATGGC
AAATATGCCAAATTGCTTTGTAAAACAACACGAGTAAAATCAATTAGAAATATGGATTAT
TCATTGAAACCTTTTGTGGTGAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5456#0      GCCGCGGCGATTCCCCCACACGGCACCACCAAATCCGCCGCCGCCGCCGCCGTCGCCGTC 60
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      GCCGCCGCCGCTTGCACCGGTTGCTCCGGGCGGGTGTCGGGATGCTGGCGAGGGTCTCCC 120
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      GCCTGGGGCTCCATGCCCTGCGCCGCGCCACTGCGCCAGGTCAAAATTCACTCGCTTCAA 180
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      GGAGGCACGAAGCAGAAGCTGTTACCTCTCATGTGAACCATTTGGGGAAGACTTTCTTCT 240
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      GTTCGAACACAAATGCTACATCCAGTGATAGGAGCAGCGAGTCAGAAGCTAAGATATCTG 300
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      TGACTTTTGTTGATAAGGATGGCGAGGAAAAGCTTGTTAAAGTACCTATAGGAATGTCAA 360
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      TGCTAGAGGCAGCACATGAGAATGACATAGAACTTGAAGGGGCATGTGAGGGCTCTCTTG 420
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      CATGTTCGACATGCCATGTGTTGTAACGGATGTTGACTACTACAACAAATTGGAAGATCC 480
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      TGTGGATGAGGAGAACGATATGCTGGACCTTGCATTTGGGCTTACAGAGACATCCCGTCT 540
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      TGGTTGCCAAGTGATTGCAAGCCCTGAGCTTGATGGAATGCGATTGGCACTGCCATCAGC 600
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      TACGAGAAATTTTGCAGTTGATGGGTATGTTGCGAAATCACACTGATTTCAACAAAATCA 660
consensus_5456#1      ------------------------------------------------------------
                                                                                  

consensus_5456#0      TGAAAGGTGGATGTTGGATGACTCCAGTTTTGTAGAATACGAGATATAGTTATTGGCGTA 720
consensus_5456#1      --------------------------ACACTGCATGGACTGAAGGA--GTAGAAAGCTTA 32
                                                    ** *      **   *  **     ** **

consensus_5456#0      TCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGAT 780
consensus_5456#1      TCCTCAATCTTGAATTTCTATTCTACAGAAAACAAACACTTAATATCTATGATAATTGAT 92
                      ************************************************************

consensus_5456#0      AACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACA 840
consensus_5456#1      AACTTCCCTTCTCTCTTTTTTCGATGGCAAATATGCCAAATTGCTTTGTAAAACAACACG 152
                      *********************************************************** 

consensus_5456#0      AGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAATATGGC 900
consensus_5456#1      AGTAAAATCAATTAGAAATATGGATTATTCATTGAAACCTTTTGTGGTGAAAAAAA---- 208
                      ****************************************************** *