These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence [TCTTCTCCTTGACCCTTCTTCTTCTTCTTCTTCCTCCTCCTGATGATCAACCAGCATAAAGGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCATGTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTTGGGTGTGATTATGTATATAAATATCTGGGTGATTGGTGGTGAGTAGTTGTTCTTGCTGCTGTGGTTTCTTGATACTTTGCTTCAGGGACAGGCCATGGACAGAAGGAACCAAGCTCCTCCGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCGTCAAGCGCGACGGCGAGGGGCGCGTGTCGTGGGACGTGCTCGACCCGGCGCGGCTGGCGTGGCGC] [+] EMBL OSS3885A [TCTTCTCCTTGACCCTTCTTCTTCTTCTTCTTCCTCCTCCTGATGATCAACCAGCATAAAGGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCATGTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTTGGGTGTGATTATGTATATAAA ] [+] EMBL CB641562 [ CTTCCTCCTCCTGATGATCAACCAGCATAAAGGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCATGTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTT GGTGTGATTATGTATATATATATCTGGGTGATTGGTGGTGAGTAGTTGTTCTTGCTGCTGTGGTTTCTTGATACTTTGCTTCAGGGACAGGCCATGGACAGAAGGAACCAAGCTCCTCCGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCGTCAAGCGCGACGGCGAGGGGCGCGTGTCGTGGGACGTGCTCGACCCGGCGCGGCTGGCGTGGCGC] consensusID : consensus_5458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [TTGTGTTTGTGATTGGATATAGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCCGTCAAGCGCGACGGCGAGGGGGNGCGTGTN] [+] EMBL AU184877 [TTGTGTTTGTGATTGGATATAGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCCGTCAAGCGCGACGGCGAGGGGGNGCGTGTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5458#0 TCTTCTCCTTGACCCTTCTTCTTCTTCTTCTTCCTCCTCCTGATGATCAACCAGCATAAA 60 consensus_5458#1 ------------------------------------------------------------ consensus_5458#0 GGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCAT 120 consensus_5458#1 ------------------------------------------------------------ consensus_5458#0 GTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTTGGGTGTGATTATGTATAT 180 consensus_5458#1 ------------------------------------------------------------ consensus_5458#0 AAATATCTGGGTGATTGGTGGTGAGTAGTTGTTCTTGCTGCTGTGGTTTCTTGATACTTT 240 consensus_5458#1 ------------------------------------------------------------ consensus_5458#0 GCTTCAGGGACAGGCCATGGACAGAAGGAACCAAGCTCCTCCGGTTGATAGCTCAGCATG 300 consensus_5458#1 ---------------------TTGTGTTTGTGATTGGATATAGGTTGATAGCTCAGCATG 39 * * ****************** consensus_5458#0 CTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGC 360 consensus_5458#1 CTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGC 99 ************************************************************ consensus_5458#0 GAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATC 420 consensus_5458#1 GAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATC 159 ************************************************************ consensus_5458#0 GCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCC 480 consensus_5458#1 GCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCC 219 ************************************************************ consensus_5458#0 GCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGG 540 consensus_5458#1 GCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGG 279 ************************************************************ consensus_5458#0 TGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTA 600 consensus_5458#1 TGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTA 339 ************************************************************ consensus_5458#0 CTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCC-GTCAAGC 659 consensus_5458#1 CTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCCGTCAAGC 399 **************************************************** ******* consensus_5458#0 GCGACGGCGAGGGG-CGCGTGTCGTGGGACGTGCTCGACCCGGCGCGGCTGGCGTGGCGC 718 consensus_5458#1 GCGACGGCGAGGGGGNGCGTGTN------------------------------------- 422 ************** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||