cluster # 5458

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Oryza sativa
cluster # 5458 cluster # 5458 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5458#0 length = 718 sequences # 2

consensus_5458#1 length = 422 sequences # 1

consensusID : consensus_5458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 718
fasta sequence

                              [TCTTCTCCTTGACCCTTCTTCTTCTTCTTCTTCCTCCTCCTGATGATCAACCAGCATAAAGGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCATGTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTTGGGTGTGATTATGTATATAAATATCTGGGTGATTGGTGGTGAGTAGTTGTTCTTGCTGCTGTGGTTTCTTGATACTTTGCTTCAGGGACAGGCCATGGACAGAAGGAACCAAGCTCCTCCGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCGTCAAGCGCGACGGCGAGGGGCGCGTGTCGTGGGACGTGCTCGACCCGGCGCGGCTGGCGTGGCGC]

[+] EMBL OSS3885A             [TCTTCTCCTTGACCCTTCTTCTTCTTCTTCTTCCTCCTCCTGATGATCAACCAGCATAAAGGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCATGTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTTGGGTGTGATTATGTATATAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB641562             [                             CTTCCTCCTCCTGATGATCAACCAGCATAAAGGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCATGTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTT GGTGTGATTATGTATATATATATCTGGGTGATTGGTGGTGAGTAGTTGTTCTTGCTGCTGTGGTTTCTTGATACTTTGCTTCAGGGACAGGCCATGGACAGAAGGAACCAAGCTCCTCCGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCGTCAAGCGCGACGGCGAGGGGCGCGTGTCGTGGGACGTGCTCGACCCGGCGCGGCTGGCGTGGCGC]




>consensus_5458#0
TCTTCTCCTTGACCCTTCTTCTTCTTCTTCTTCCTCCTCCTGATGATCAACCAGCATAAA
GGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCAT
GTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTTGGGTGTGATTATGTATAT
AAATATCTGGGTGATTGGTGGTGAGTAGTTGTTCTTGCTGCTGTGGTTTCTTGATACTTT
GCTTCAGGGACAGGCCATGGACAGAAGGAACCAAGCTCCTCCGGTTGATAGCTCAGCATG
CTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGC
GAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATC
GCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCC
GCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGG
TGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTA
CTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCGTCAAGCG
CGACGGCGAGGGGCGCGTGTCGTGGGACGTGCTCGACCCGGCGCGGCTGGCGTGGCGC

consensusID : consensus_5458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [TTGTGTTTGTGATTGGATATAGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCCGTCAAGCGCGACGGCGAGGGGGNGCGTGTN]

[+] EMBL AU184877             [TTGTGTTTGTGATTGGATATAGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCCGTCAAGCGCGACGGCGAGGGGGNGCGTGTN]




>consensus_5458#1
TTGTGTTTGTGATTGGATATAGGTTGATAGCTCAGCATGCTTGTGCAGAGTGGAGAGATC
GGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGCGAAGGCGTGCGCGCAGCCGAG
CCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATCGCCGGGGCGCGACCACCGCGG
CGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCCGCTCATCCCGGGTCTCCCCGA
CGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGGTGATCACTGGAAGCTGAGGCT
GGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTACTTCTACGGCCTCCGGCGGCG
GCTGGGCCTCGCCGAGCAGTGGGTGTACGCCCGTCAAGCGCGACGGCGAGGGGGNGCGTG
TN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5458#0      TCTTCTCCTTGACCCTTCTTCTTCTTCTTCTTCCTCCTCCTGATGATCAACCAGCATAAA 60
consensus_5458#1      ------------------------------------------------------------
                                                                                  

consensus_5458#0      GGAGAGGCTTCTGGTTGGGAGGTTTTGCAGTTCTCTTACCCTCTTCTGTTCATGAATCAT 120
consensus_5458#1      ------------------------------------------------------------
                                                                                  

consensus_5458#0      GTGCAATGGGTGTTGGAGCTGTAGAAGCATGGTGATGATTTTGGGTGTGATTATGTATAT 180
consensus_5458#1      ------------------------------------------------------------
                                                                                  

consensus_5458#0      AAATATCTGGGTGATTGGTGGTGAGTAGTTGTTCTTGCTGCTGTGGTTTCTTGATACTTT 240
consensus_5458#1      ------------------------------------------------------------
                                                                                  

consensus_5458#0      GCTTCAGGGACAGGCCATGGACAGAAGGAACCAAGCTCCTCCGGTTGATAGCTCAGCATG 300
consensus_5458#1      ---------------------TTGTGTTTGTGATTGGATATAGGTTGATAGCTCAGCATG 39
                                             *        *         ******************

consensus_5458#0      CTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGC 360
consensus_5458#1      CTTGTGCAGAGTGGAGAGATCGGTCGCCGGCGCCGCCGCGGCGAGGCTGATGCCGAGGGC 99
                      ************************************************************

consensus_5458#0      GAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATC 420
consensus_5458#1      GAAGGCGTGCGCGCAGCCGAGCCTCAGGGCGTCCATCCACCCGCTCAAGCCCAAGAGATC 159
                      ************************************************************

consensus_5458#0      GCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCC 480
consensus_5458#1      GCCGGGGCGCGACCACCGCGGCGGCGGCGGCGCCGGTGGCGGCGGCGGCCGGCAGTGCCC 219
                      ************************************************************

consensus_5458#0      GCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGG 540
consensus_5458#1      GCTCATCCCGGGTCTCCCCGACGACCTCGCCGTGGCGTGCCTCATCCGCGTGCCGCGAGG 279
                      ************************************************************

consensus_5458#0      TGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTA 600
consensus_5458#1      TGATCACTGGAAGCTGAGGCTGGTGTGCAGGAGGTGGTCCCGGCTGCTCGCCGGCAACTA 339
                      ************************************************************

consensus_5458#0      CTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCC-GTCAAGC 659
consensus_5458#1      CTTCTACGGCCTCCGGCGGCGGCTGGGCCTCGCCGAGCAGTGGGTGTACGCCCGTCAAGC 399
                      **************************************************** *******

consensus_5458#0      GCGACGGCGAGGGG-CGCGTGTCGTGGGACGTGCTCGACCCGGCGCGGCTGGCGTGGCGC 718
consensus_5458#1      GCGACGGCGAGGGGGNGCGTGTN------------------------------------- 422
                      **************  ******