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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1006 fasta sequence
[CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCATGGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTCGTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCCCAACGACAGCTCGTCGAGCTTCACCAACGACAGCGCCGCCGCCTCCTCGTCATC-GGACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGACGGCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGCCCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAATCCAATGTG]
[+] EMBL AK109938 [CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCATGGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTCGTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCCCAACGACAGCTCGTCGAGCTTCACCAACGACAGCGCCGCCGCCTCCTCGTCATC GGACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGACGGCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGCCCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAATCCAATGTG]
[+] EMBL BI802782 [ cccCTCGTC AGC GCGCC AC CA C CCCCCGCCTCCTCGTCATCGGGACGACGACAGCAC GCCGCCGCCGGAGTCAGCGGCGCC GCGGCGCCGGCACCGCCGCCACGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGAC GCCGCGCCGACGGCGTAGGGTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTAGAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTTGCCCGTCTTAA AC AACATTAAGAAAAGGGC ACATGTCATAATCTCGCCGTCATGCTAATGGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCGTCGCTTTCTGATTCCGTGGTGGAAACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCC AATTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACTCATGTAGTTAATTTCTATGGTTCAGTGCTGAAATAATAAAAAAAAT ]
consensusID : consensus_5470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence
[TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCATGGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGACACAACGCCGCTCTGTATAGGCTGGCGCTGTGGGGCTGCGGCGGCGTTTACGGGCATGTGCTGTTACACCTACCACTGTTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAGTCGTCGATATATGTNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAATGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGTAATATTGTTGATTAATCTGGTTCTGTGAGGCGTTTGTATTGTTTGCTGAATTTTTGTTTTTGTATCGTATAGCTATGTTTCTAATTACTTAATGGCACTATGGTGGTATGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTNTGTGGATACTTTAGGATTNCTATTTCGGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACTGAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNNNNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTGTGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT]
[+] EMBL AW155082 [TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGATTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGCAAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGGCGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGCGGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCATGGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGACACAACGCCGCTCTGTATAGGCTGGCGCTGTGGGGCTGCGGCGGCGTTTACGGGCATGTGCTGTTACACCTACCACTGTTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAGTCGTCGATATATGTNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAATGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGTAATATTGTTGATTAATCTGGTTCTGTGAGGCGTTTGTATTGTTTGCTGAATTTTTGTTTTTGTATCGTATAGCTATGTTTCTAATTACTTAATGGCACTATGGTGGTATGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTNTGTGGATACTTTAGGATTNCTATTTCGGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACTGAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNNNNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTGTGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5470#0 CACAATTTAGCTTAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTAAAATTAGCTTAAGA 60
consensus_5470#1 ------------TAGCTTAAGCCACTTGATCTCAAGCTCAAGCTTANAATTAGCTTAAGA 48
********************************** *************
consensus_5470#0 TTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGC 120
consensus_5470#1 TTAAGCCATTAATTAGCCAAGCTAACTAAGCAAGCAAGATCTTGTTGAGGAGATGATGGC 108
************************************************************
consensus_5470#0 AAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGGGTGTGCGGCGG 180
consensus_5470#1 AAGCGACGGCAGCGCGAGCCCGGCCAGCTGCGGCGGCGCGGCGTGCGGNGTGTGCGGCGG 168
************************************************ ***********
consensus_5470#0 CGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGC 240
consensus_5470#1 CGCGGCGACGGTGTACTGCGCGGCGGACGCGGCGGCGCTCTGCGTGCCGTGCGACGCCGC 228
************************************************************
consensus_5470#0 GGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGCTCGCGGTCGCCAT 300
consensus_5470#1 GGTGCACGCGGCCAACCCGCTGGCGTCGCGCCACGACCGCGTGCCGTTCGCGGTCGCCAT 288
********************************************** *************
consensus_5470#0 GGCGGCGGCGAGCTCCGGGGTGTACGACCACCTGTTCGCGCCCGACGACGACGCCGCCTC 360
consensus_5470#1 GGGGGNGGCGAGCTCCGGGGTGTNCGACCACCTGGTCGCGCCCGAC-ACAACGCCGCTCT 347
** ** ***************** ********** *********** ** *******
consensus_5470#0 GTCATGGGCTGCCGCCGCGGCGGCGGGGGCGGCGGTGCAGGGGCAGGGGCAGGGGAGCCC 420
consensus_5470#1 GT-ATAGGCTGGCGCTGTGG-GGCTGCGGCGGCGTT-TACGGGCATGTGCTGTT--ACAC 402
** ** ***** *** * ** *** * ******* * * ***** * ** * * *
consensus_5470#0 CAACGACAGCTCGTCGAGCTTCACCAACGA----CAGCGCCGCCGCCTCCTCGTCATCGG 476
consensus_5470#1 CTACCACTG-TTGTTGGTCTTCACAAAAGAATGCCGGCGGGGTGGGGAGCTGGCCTCGAG 461
* ** ** * * ** * ****** ** ** * *** * * ** * * *
consensus_5470#0 ACGACGACAGCACGGCCGCCGCCGGAGTCAGCGGCGCCGGCGGCGCCGGCGCCGCCGCCA 536
consensus_5470#1 TCGTCGATA-TATG--TNTTTTCAGTAATTNTGTCTTGGGTCGTTAGTTTTATTCTGTAA 518
** *** * * * * * * * ** * * * *
consensus_5470#0 CGAAGGAGGCCAAGTTCTGGCTCTCCTTCTCCGACGAC--GGCCGCGCCGACGGCGTAGG 594
consensus_5470#1 TGTACGTGTTCGGGTTATTATTCTCCTGTCAATATGNTCTGGGATAGTTCACATCATTGT 578
* * * * * *** * ****** * * ** * ** * * *
consensus_5470#0 GTTCTACATGGACAGCACCACCGCTGCCACCGCGGCCTACGGCGTCGTGCCAACCTTCTA 654
consensus_5470#1 AATAT-TGTTGATTAATCTGGTTCTGTGA--GGCGTTTGTATTGTT-TGCTGAATTTTT- 633
* * * ** * *** * * * * ** *** * ** *
consensus_5470#0 GAAAGTTCCAGAAACCCCTCTCCCAATGGGCGCCAACGCGGCAACGGCAATGGCGTTGGC 714
consensus_5470#1 ----GTTTTTGTA--TCGTATAGCTATGTTT-CTAATTACTTAATGGCACTATGGTGGTA 686
*** * * * * * * *** * ** ** **** * ** *
consensus_5470#0 CCGTCTTAAGACAAACATTAAGAAAAGGGCAACATGTCATAATCTCGCCGTCATGCTAAT 774
consensus_5470#1 TGGAGTCTCTATGCATGTTAGGATTTGNTGATCTTATTGTN-TGTGGATACTTTAGGATT 745
* * * * *** ** * * * * * * * * * * * *
consensus_5470#0 GGTGGCGCATGGTGTTCATGTCGTCGTCTTCTTCGCCG-TCGCTTTCTGATTCCGTGGTG 833
consensus_5470#1 NCTATTTC--GGTTCTTCTGCTTATATTTTCTTGTCGGATGGCGCACTGGGTAGGAGACT 803
* * *** * ** * ***** * * * ** *** * * *
consensus_5470#0 GAA-ACCCGCATCACTATTTTTAACTGCTGATGCGGGTTTTCGGTGGGTGGAATTCCAAA 892
consensus_5470#1 GAGTGGCTNTNNNNNNNNNNNTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNGNN 863
** * * *
consensus_5470#0 TTCCATCGGTTAAAATTAGGGGGATTATTATTAATGCATTGTGACTTTTGTAAGATAACT 952
consensus_5470#1 NNNCGGGNNNNNNNNNNNNNNNNCCGGNNNNNNNNNNNNTNNNNNNNNNGTGGGGGGGTG 923
* * ** *
consensus_5470#0 CATGTAGTTAATTTCTATGGTTCAGTGCTG-AAATAATAAAAAAAATCCAATGTG- 1006
consensus_5470#1 TGGGCGGGGACGCGGCGTGAGAAGGNGGTGTGNNNNNTNNNTNNNNNTNNNTNANT 979
* * * ** * * ** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||