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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1192 fasta sequence
[CACCACTCCTCCTGCGCCTCCGCTCACCCGCGCCACCCGCCGCCGTCGCCGCCGGGTCCCTCTCCCGGCGGCGGCGGCGGCGCAGGGCCGGCCTCGCGCCGGTGCGAGCGTCGTGGCAGGAGCTTGCGGGGGTGCTGGTGTTCTCCGCCGTGCCCTTCACGGCCGTCAAGGCCCTCGCCAACAGCCCCCTCGGCGCCCGCCTCTGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCGCCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGCTCGTGGTATGGGGATGAACGGCCGCGGTGGCTAGGCCCCGTGCCGTACGAGTACCCGGCGCATCTCACCGGAGAGTACCCTGGCGATTACGGGTTCGATATTGCAGGCCTGGGCAGGGATCCCGTTGCTTTCGCAAACTACTTCAACTTTGAGATCTTGCATTGTCGGTGGGCCATGCTTGCTGCTCTTGGTGTTGTTGTTCCTGAACTGTTAGATCTTTTTGGAGTAGTCCATTTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGGTTGCATGGCTCGGCTTCTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGAACCTTGTTGAACACTTGTCGGACCCGCTGCATAACAACATTTTGTCCTCTTTTGTTTGAGCCTTCTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCACATGAACAGTAGGACTTATGTGCAGCTAGCGTTTATATTTACTGGTTTTGAACACTAGTTAGCTATTTACACATGTAAATATGTAACACTGGATAAGAAGATTTATGTGGGGTTTGTAAATGGCATGTCTTCAAACAAAGTTTACACGCCGCAAGAAATCGGCCACATTGTCAATAAGACTAAATTGATTC]
[+] EMBL AK066997 [CACCACTCCTCCTGCGCCTCCGCTCACCCGCGCCACCCGCCGCCGTCGCCGCCGGGTCCCTCTCCCGGCGGCGGCGGCGGCGCAGGGCCGGCCTCGCGCCGGTGCGAGCGTCGTGGCAGGAGCTTGCGGGGGTGCTGGTGTTCTCCGCCGTGCCCTTCACGGCCGTCAAGGCCCTCGCCAACAGCCCCCTCGGCGCCCGCCTCTGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCGCCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGCTCGTGGTATGGGGATGAACGGCCGCGGTGGCTAGGCCCCGTGCCGTACGAGTACCCGGCGCATCTCACCGGAGAGTACCCTGGCGATTACGGGTTCGATATTGCAGGCCTGGGCAGGGATCCCGTTGCTTTCGCAAACTACTTCAACTTTGAGATCTTGCATTGTCGGTGGGCCATGCTTGCTGCTCTTGGTGTTGTTGTTCCTGAACTGTTAGATCTTTTTGGAGTAGTCCATTTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGGTTGCATGGCTCGGCTTCTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGAACCTTGTTGAACACTTGTCGGACCCGCTGCATAACAACATTTTGTCCTCTTTTGTTTGAGCCTTCTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCACATGAACAGTAGGACTTATGTGCAGCTAGCGTTTATATTTACTGGTTTTGAACACTAGTTAGCTATTTACACATGTAAATATGTAACACTGGATAAGAAGATTTATGTGGGGTTTGTAAATGGCATGTCTTCAAACAAAGTTTACACGCCGCAAGAAATCGGCCACATTGTCAATAAGACTA ]
[-] EMBL CB624271 [ TGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTTTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAAGGGGTCATTGTCATCGCTATTTGTCAAGCCCTTTTGATGGTTGGTCCAGAATACGCAAGGTACTGCGGGATTGAGGCTTTAGAACCCTTGGGATTATATTTTCCGGGAGACATAAACTACCCGGGAGGAGCACTTTTTGATCCCTTGGGGCTTTCCAAAGATCCAGTTGCGTTTGAAGATTTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGGTTGCATGGCTCGGGTTTTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGAACCTTGTTGAACACTTGTTGGACCCGCTGCATAACAACATTTTGTCCTTTTTTGTTTGAGCCTTTTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCCCATGAACAGTAGGACTTATGTGCAGCTAGCGTTTATATTTACTGGTTTTGAACCCTAGTTAGCTATTTACCCATGTAAATATGTAACCCTGGATAAGAAGATTTATGTGGGGTTTGTAAATGGCATGTTTTCAAACAAAGTTTACCCCCCGCAAGAAATCGGCCCCATTGTCAATAAGACTAAATTGATTC]
consensusID : consensus_5472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 909 fasta sequence
[TTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCTATATCGGTCTGCTGGCAATGGTTGCATGGCTCGGCTTCTACATGCAGTCAGCTGTAACTGGCAAGGTGCCTAATTATAACCTTGTGGAACACTTGTCGTACCCGCTGCATAGCGTCATTTTGGCCTTTTTGGTTGGAGCCTTCTTTCGATGGACATAGCAGGTGTGTCCTGGTGTGGCCAGTGACCATGGGGACTGATGGCAGCTGAGCGTGATATGTAGTGTGTCTTGATCACTGGTTAGGTATCTTCGCGTTGCACTTTATGTCTGCAGTGGGTTAGAAAGATGTTTATTGGATGGTATGTATATGGACTGGTCGCCTAGCGAAGTATGAGCGCGTGTGGAATCTAGCATATTGCGGATGTGACGTCTATGATAGGTGTGAGTCTGTGTGTGGAGCTTATCTAGAGGTAGGCTGGGCCATGTGCTCATATGAGTCTCTATGGCTGTGGTGTGTTGTGTCCTGGGACTGGAAGCGTAGTCTACATCGGTTGTGACGCTCTTGCGTGGACTGTGAGGTCGCGCGCTCTAGCTGGGTCATGTTGAGACGACCGAGATGTGCGGTGCGGCTGTACTTGCTCATGGGCACTGTCGTTGTAGATGATGGGAGTGA]
[+] EMBL AW155144 [TTTGTCGAGCCTGTTTGGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTGGTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGATGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTATATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCAAAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCTATATCGGTCTGCTGGCAATGGTTGCATGGCTCGGCTTCTACATGCAGTCAGCTGTAACTGGCAAGGTGCCTAATTATAACCTTGTGGAACACTTGTCGTACCCGCTGCATAGCGTCATTTTGGCCTTTTTGGTTGGAGCCTTCTTTCGATGGACATAGCAGGTGTGTCCTGGTGTGGCCAGTGACCATGGGGACTGATGGCAGCTGAGCGTGATATGTAGTGTGTCTTGATCACTGGTTAGGTATCTTCGCGTTGCACTTTATGTCTGCAGTGGGTTAGAAAGATGTTTATTGGATGGTATGTATATGGACTGGTCGCCTAGCGAAGTATGAGCGCGTGTGGAATCTAGCATATTGCGGATGTGACGTCTATGATAGGTGTGAGTCTGTGTGTGGAGCTTATCTAGAGGTAGGCTGGGCCATGTGCTCATATGAGTCTCTATGGCTGTGGTGTGTTGTGTCCTGGGACTGGAAGCGTAGTCTACATCGGTTGTGACGCTCTTGCGTGGACTGTGAGGTCGCGCGCTCTAGCTGGGTCATGTTGAGACGACCGAGATGTGCGGTGCGGCTGTACTTGCTCATGGGCACTGTCGTTGTAGATGATGGGAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5472#0 CACCACTCCTCCTGCGCCTCCGCTCACCCGCGCCACCCGCCGCCGTCGCCGCCGGGTCCC 60
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 TCTCCCGGCGGCGGCGGCGGCGCAGGGCCGGCCTCGCGCCGGTGCGAGCGTCGTGGCAGG 120
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 AGCTTGCGGGGGTGCTGGTGTTCTCCGCCGTGCCCTTCACGGCCGTCAAGGCCCTCGCCA 180
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 ACAGCCCCCTCGGCGCCCGCCTCTGCCGCCGCCTCGACGACCGGAAGGCCGCCGCCGCCG 240
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 CCGAGGCCGACGCCCTCCGCTCCGCCGCGCGCCAAGCCCGCACCGCCAGCTCGTGGTATG 300
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 GGGATGAACGGCCGCGGTGGCTAGGCCCCGTGCCGTACGAGTACCCGGCGCATCTCACCG 360
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 GAGAGTACCCTGGCGATTACGGGTTCGATATTGCAGGCCTGGGCAGGGATCCCGTTGCTT 420
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 TCGCAAACTACTTCAACTTTGAGATCTTGCATTGTCGGTGGGCCATGCTTGCTGCTCTTG 480
consensus_5472#1 ------------------------------------------------------------
consensus_5472#0 GTGTTGTTGTTCCTGAACTGTTAGATCTTTTTGGAGTAGTCCATTTTGTCGAGCCTGTTT 540
consensus_5472#1 --------------------------------------------TTTGTCGAGCCTGTTT 16
****************
consensus_5472#0 GGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTG 600
consensus_5472#1 GGTGGAAAGTTGGTTACGCAAAACTTCAGGGTGACACTCTTGATTACCTTGGAATTCCTG 76
************************************************************
consensus_5472#0 GTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGA 660
consensus_5472#1 GTTTCCGAATCGCTGGTGGTCAGGGTGTCATTGTCATCGCTATCTGTCAAGCCCTTTTGA 136
************************************************************
consensus_5472#0 TGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTAT 720
consensus_5472#1 TGGTTGGTCCAGAATATGCAAGGTACTGCGGGATTGAGGCTCTAGAACCCTTGGGATTAT 196
************************************************************
consensus_5472#0 ATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCA 780
consensus_5472#1 ATCTTCCGGGAGACATAAACTACCCGGGAGGAGCACTCTTCGATCCCTTGGGGCTCTCCA 256
************************************************************
consensus_5472#0 AAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAA 840
consensus_5472#1 AAGATCCAGTCGCGTTCGAAGATCTAAAGGTGAAGGAGATCTATATCGGTCTGCTGGCAA 316
***************************************** * * ***** *******
consensus_5472#0 TGGTTGCATGGCTCGGCTTCTACATCCAGGCAGCTGTAACTGGCAAGGGTCCTATTCAGA 900
consensus_5472#1 TGGTTGCATGGCTCGGCTTCTACATGCAGTCAGCTGTAACTGGCAAGGTGCCTAATTATA 376
************************* *** ****************** **** * * *
consensus_5472#0 ACCTTGTTGAACACTTGTCGGACCCGCTGCATAACAACATTTTGTCCTCTTTTGTTTGAG 960
consensus_5472#1 ACCTTGTGGAACACTTGTCGTACCCGCTGCATAGCGTCATTTTGGCCTTTTTGGTTGGAG 436
******* ************ ************ * ******* *** *** *** ***
consensus_5472#0 CCTTCTTTTAATGGACATAGCAGCTGTGTCCTGTTTGGTCACATGAACAGTAGGACTTAT 1020
consensus_5472#1 CCTTCTTTCGATGGACATAGCAGGTGTGTCCTGGTGTGGCCAGTGACCATGGGGACTGAT 496
******** ************* ********* * * * *** ** ***** **
consensus_5472#0 GTGCAGCTAGCGTTTATATTTACTG-GTTTTGAACACTAGTTAGCTATTTACACATGTAA 1079
consensus_5472#1 G-GCAGCTGAGCGTGATATGTAGTGTGTCTTGATCACTGGTTAGGTATCTTCGCGTTGCA 555
* ****** * **** ** ** ** **** **** ***** *** * * * * *
consensus_5472#0 ATATGTA---ACACTGGATAAGAA-GATTTATGTGGG---GTTTGTAAATGGCATG-TCT 1131
consensus_5472#1 CTTTATGTCTGCAGTGGGTTAGAAAGATGTTTATTGGATGGTATGTATATGGACTGGTCG 615
* * * ** *** * **** *** * * * ** ** **** **** ** **
consensus_5472#0 TCAAACAAAGTTTACACGCCGCAAGAAATCGGCCACATTGTCAATAAGACTAAATTGATT 1191
consensus_5472#1 CCTAGCGAAGTATGAGCGC-GTGTGGAATCTAGCATATTGCGGATGTGACGTCTATGATA 674
* * * **** * *** * * **** ** **** ** *** ****
consensus_5472#0 C----------------------------------------------------------- 1192
consensus_5472#1 GGTGTGAGTCTGTGTGTGGAGCTTATCTAGAGGTAGGCTGGGCCATGTGCTCATATGAGT 734
consensus_5472#0 ------------------------------------------------------------
consensus_5472#1 CTCTATGGCTGTGGTGTGTTGTGTCCTGGGACTGGAAGCGTAGTCTACATCGGTTGTGAC 794
consensus_5472#0 ------------------------------------------------------------
consensus_5472#1 GCTCTTGCGTGGACTGTGAGGTCGCGCGCTCTAGCTGGGTCATGTTGAGACGACCGAGAT 854
consensus_5472#0 -------------------------------------------------------
consensus_5472#1 GTGCGGTGCGGCTGTACTTGCTCATGGGCACTGTCGTTGTAGATGATGGGAGTGA 909
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||