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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5473#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[TAACTTTGTTTATTTCTTAATACATATAGGTGTGCTCTGATAATTCCACTAAAATTAATTTACACATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTAACTTTGCACATTTTAATTTTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTAGAGGATGTATTTTAGAGTCGTTTTGGGACGTGACAGGTATGCAGTGTGCCGATGCCAGTTATCGAAGCTAACACATCAGTTATGCATTTGGGGATTCGGGTCTAGTGAATAGGACATGGCTAAGCGCCCACCCGAGATTGGACTCGAGGGTGGGTAAGACCCGGAGCGAGGTTGTCCACGAGCGAAGGTCCCTCGAAGAGGCGAGCTTGGAAACCAATCATTTTTTTAGTACCAAAATGTATAGTGTTTTTACGTGAGAGGGATTCTACCTTTGGGGAAGGTAGGATTCCTCGGAGCAAAGGAAATATAATGTTGAATGTTTTCGGGGAAGTGAGAGAAGTACTTCCTTGGGAAGGGAGTACTTCTTGGAGTAAAGGAAAACACTGCAGTTACGGTTGTAAAGAGGTTAGTCCCGTTGTTACGGAGAGTTAGCGATGTTTACACTGGTGTCACGTGTACG]
[+] EMBL CB635908 [TAACTTTGTTTATTTCTTAATACATATAGGTGTGCTCTGATAATTCCACTAAAATTAATTTACACATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTAACTTTGCACATTTTAATTTTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTAGAGGATGTATTTTAGAGTCGTTTTGGGACGTGACAGGTATGCAGTGTGCCGATGCCAGTTATCGAAGCTAACACATCAGTTATGCATTTGGGGATTCGGGTCTAGTGAATAGGACATGGCTAAGCGCCCACCCGAGATTGGACTCGAGGGTGGGTAAGACCCGGAGCGAGGTTGTCCACGAGCGAAGGTCCCTCGAAGAGGCGAGCTTGGAAACCAATCATTTTTTTAGTACCAAAATGTATAGTGTTTTTACGTGAGAGGGATTCTACCTTTGGGGAAGGTAGGATTCCTCGGAGCAAAGGAAATATAATGTTGAATGTTTTCGGGGAAGTGAGAGAAGTACTTCCTTGGGAAGGGAGTACTTCTTGGAGTAAAGGAAAACACTGCAGTTACGGTTGTAAAGAGGTTAGTCCCGTTGTTACGGAGAGTTAGCGATGTTTACACTGGTGTCACGTGTACG]
consensusID : consensus_5473#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence
[AAAAAAGGACTTTTTAGAGCTTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTAATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTGTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGAGTCGTTTTGAGACGCGACACTAGTGAACTGGGTGCCGTTATCCTATTTGTCGTCCAGAAGACCACCGATTCGTGTGGTCTTGGACGGGCCGTCGCTCAGGGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGCTGCCTTGGGGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGGACGCCGCGGCGAGGTGGTCCGCGCGCTGCTCCATACAAGCAAGCGCGAATTTGAGGTCGCCATGGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCATCTGGTGATAGGCGTAGTGGACCGCCGCCATGAACTTCACCAACACGGGCCTC]
[+] EMBL CK085142 [AAAAAAGGACTTTTTAGAGCTTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTAATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTGTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGAGTCGTTTTGAGACGCGACACTAGTGAACTGGGTGCCGTTATCCTATTTGTCGTCCAGAAGACCACCGATTCGTGTGGTCTTGGACGGGCCGTCGCTCAGGGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGCTGCCTTGGGGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGGACGCCGCGGCGAGGTGGTCCGCGCGCTGCTCCATACAAGCAAGCGCGAATTTGAGGTCGCCATGGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCA ]
[+] EMBL CK085143 [ TTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTAATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTTAGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTGTTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGAGTCGTTTTGAGACGCGACACTAGTGAACTGGGTGCCGTTATCCTATTTGTCGTCCAGAAGACCACCGATTCGTGTGGTCTTGGACGGGCCGTCGCTCAGGGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGCTGCCTTGGGGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGGACGCCGCGGCGAGGTGGTCCGCGCGCTGCTCCATACAAGCAAGCGCGACTTTGAGGTCGCCATGGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCATCTGGTGATAGGCGTAGTGGACCGCCGCCATGAACTTCACCAACACGGGCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5473#0 ------------------------------------------TAACTTTGTTTATTTCTT 18
consensus_5473#1 AAAAAAGGACTTTTTAGAGCTTTTCTTTTTATAAAACCATTTTAACTTCGTTTATTTCTA 60
****** **********
consensus_5473#0 AATACATATAGGTGTGCTCTGATAATTCCACTAAAATTAATTTACACATTTTAGGCTTTT 78
consensus_5473#1 ATAATTATTATTTGTGCTCTGAAAATTCCACTAAAATTTATTTATGCATTTTAGGCTTTT 120
* * ** ********** *************** ***** **************
consensus_5473#0 AGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTAACTTTGCACATTTTAATTT 138
consensus_5473#1 AGGAAATATACAAAAATCCTCCAAGCCTTATTTGACTTTTTACTTTGCACATTTTAATTG 180
**************************************** ******************
consensus_5473#0 TTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTAGAGGATGTATTTTAGA 198
consensus_5473#1 TTGGAGGCTTTCACATGGATTTTAATTATTCTAGGCATAATTTCGAGGATGTATTTTAGA 240
******************************************* ****************
consensus_5473#0 GTCGTTTTGGGACGTGACAGGTATGCAGTGTGCCGATGCCAGTTATCGAAGCTAACACAT 258
consensus_5473#1 GTCGTTTTGAGACGCGACACTAGTGAACTG----GGTGCC-GTTATCCTATTTGTCGT-C 294
********* **** **** ** * ** * **** ****** * * *
consensus_5473#0 CAGTTATGCATTTGGGGATTCGGGTCTAGTGAATAGGACATGGCTAAGCGCCCACCCGAG 318
consensus_5473#1 CAGAAGACCACC----GATTCGTGT----------GGTCTTGGACGGGCCGTCGCTC-AG 339
*** ** ****** ** ** * *** ** * * * **
consensus_5473#0 ATTGGACTCGAGGGTGGGTAAGACCCGGAGCGAGGTTGTCCACGAGCGAAGGTCCCTCGA 378
consensus_5473#1 GGCAACCTCCTTGACCGGGACCTCGTCGCACGTGACCATCCGC---------TGCCTTGG 390
*** * ** * * * ** * *** * * *** *
consensus_5473#0 AGAGGCGAGCTTGGAA--ACCAATCATTTTTTTAGTACCAAAATGTATAGTGTTTTTACG 436
consensus_5473#1 GGCGGCCGGGACGGAGGTACTGAGCCTCTCGTCGCCACCCGCGGGCTTGG--ACGCCGCG 448
* *** * *** ** * * * * * *** * * * **
consensus_5473#0 TGAGAGGGATTCTACCTTTGGGGAAGGTAGGATTCCTCGGAGCAAAGGAAATATAATGTT 496
consensus_5473#1 GCGAGGTGGTCCGCGCGCTGCTCCATACAAG-----CAAGCGCGAATTTGAGGTCGCCAT 503
* * * * * ** * * * * ** ** * * *
consensus_5473#0 GAATGTTTTCGGGGAAGTGAGAGAAGTACTTCCTTGGGAAGGGAGTACTTCTTGGAGTAA 556
consensus_5473#1 GGACGGTGATGGGGCCACCGGGGCCCGGCATCTTCATCTGGTGA-------TAGGCGTAG 556
* * * * **** * * * ** * * ** * ** ***
consensus_5473#0 AGGAAAACACTGCAGTTACGGTTGTAAAGAGGTTAGTCCCGTTGTTACGGAGAGTTAGCG 616
consensus_5473#1 TGGAC--CGCCGCCATGAACTTCACCAACACG--GGCCTC-------------------- 592
*** * * ** * * * ** * * * * *
consensus_5473#0 ATGTTTACACTGGTGTCACGTGTACG 642
consensus_5473#1 --------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||