cluster # 5475

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Oryza sativa
cluster # 5475 cluster # 5475 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5475#0 length = 569 sequences # 1

consensus_5475#1 length = 514 sequences # 1
consensus_5475#2 length = 316 sequences # 1

consensusID : consensus_5475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [ATCGTAGGCTTGTTAGAAAAGATCGCTCAAAATGGCTTCTAGGTCTCTTGTGTTGATGTTAGTGTTGATGGTTTCTCTTGTCATCGTCTCGCAGGGTGTCCTTGCTGCAAGGGAGCTTGCAGAGAAAACCAAAGTGGATGTAGATGGAATGAATGTCGACCTTCCTAAAGGCCGCAAAGGTGCAGTTGCAGTCTCAGGGTACGGTGGTGGTTGGTCAGGGTCATACGGTGGCAGACACTATCCATGATACCCCTAAATATCATGGATATATAAGGATTAATTTAGCTTAATTAACCCCTTGTATATGTGCTCCTATTGTACTGTGTATTTACATGTGTTGTGTTTGTATTAAAGTTACATTTGTTGGGTCAGTCTATAGGGTACTCGTTGATTCAGTTTAAATCAACTAAACCAGAAAAATGTAGCTTCCAAGCTCATATTGTATGTTTGTTTGATATCCTTTCATAGTTTTAATACATCAGGTAATTATTAGCCTTAGAAGAACATTCCACCTTGTATTTAGCACGTTTATGATGACAAGTCCTATATATTTATAAAGTTTGTTTTCA]

[+] EMBL CA764981             [ATCGTAGGCTTGTTAGAAAAGATCGCTCAAAATGGCTTCTAGGTCTCTTGTGTTGATGTTAGTGTTGATGGTTTCTCTTGTCATCGTCTCGCAGGGTGTCCTTGCTGCAAGGGAGCTTGCAGAGAAAACCAAAGTGGATGTAGATGGAATGAATGTCGACCTTCCTAAAGGCCGCAAAGGTGCAGTTGCAGTCTCAGGGTACGGTGGTGGTTGGTCAGGGTCATACGGTGGCAGACACTATCCATGATACCCCTAAATATCATGGATATATAAGGATTAATTTAGCTTAATTAACCCCTTGTATATGTGCTCCTATTGTACTGTGTATTTACATGTGTTGTGTTTGTATTAAAGTTACATTTGTTGGGTCAGTCTATAGGGTACTCGTTGATTCAGTTTAAATCAACTAAACCAGAAAAATGTAGCTTCCAAGCTCATATTGTATGTTTGTTTGATATCCTTTCATAGTTTTAATACATCAGGTAATTATTAGCCTTAGAAGAACATTCCACCTTGTATTTAGCACGTTTATGATGACAAGTCCTATATATTTATAAAGTTTGTTTTCA]




>consensus_5475#0
ATCGTAGGCTTGTTAGAAAAGATCGCTCAAAATGGCTTCTAGGTCTCTTGTGTTGATGTT
AGTGTTGATGGTTTCTCTTGTCATCGTCTCGCAGGGTGTCCTTGCTGCAAGGGAGCTTGC
AGAGAAAACCAAAGTGGATGTAGATGGAATGAATGTCGACCTTCCTAAAGGCCGCAAAGG
TGCAGTTGCAGTCTCAGGGTACGGTGGTGGTTGGTCAGGGTCATACGGTGGCAGACACTA
TCCATGATACCCCTAAATATCATGGATATATAAGGATTAATTTAGCTTAATTAACCCCTT
GTATATGTGCTCCTATTGTACTGTGTATTTACATGTGTTGTGTTTGTATTAAAGTTACAT
TTGTTGGGTCAGTCTATAGGGTACTCGTTGATTCAGTTTAAATCAACTAAACCAGAAAAA
TGTAGCTTCCAAGCTCATATTGTATGTTTGTTTGATATCCTTTCATAGTTTTAATACATC
AGGTAATTATTAGCCTTAGAAGAACATTCCACCTTGTATTTAGCACGTTTATGATGACAA
GTCCTATATATTTATAAAGTTTGTTTTCA

consensusID : consensus_5475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [AAAAACCATTCCACCAGTCGCAAATCCTCTCTTAATTAGCTACCACCTAGCTTGGCACCAACAATTCAACTTTTACACTCATACCTGCTATCTCACTATATATAAGATGTCTCATGGGTTTCATGGTGTCCCAATCGTACATGCTTATTTCAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGAGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACCATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAACCGTGTATATGTGCATCTATTTTATTGTGTATTTAGAATGTGTTGTATCGTTATAAATCTTTAATTTTACACATGTATTTAAAGAAAAAAAAAA]

[+] EMBL BI811701             [AAAAACCATTCCACCAGTCGCAAATCCTCTCTTAATTAGCTACCACCTAGCTTGGCACCAACAATTCAACTTTTACACTCATACCTGCTATCTCACTATATATAAGATGTCTCATGGGTTTCATGGTGTCCCAATCGTACATGCTTATTTCAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGAGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACCATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAACCGTGTATATGTGCATCTATTTTATTGTGTATTTAGAATGTGTTGTATCGTTATAAATCTTTAATTTTACACATGTATTTAAAGAAAAAAAAAA]




>consensus_5475#1
AAAAACCATTCCACCAGTCGCAAATCCTCTCTTAATTAGCTACCACCTAGCTTGGCACCA
ACAATTCAACTTTTACACTCATACCTGCTATCTCACTATATATAAGATGTCTCATGGGTT
TCATGGTGTCCCAATCGTACATGCTTATTTCAAAACTCAGCTCAAAATGGCTTCTAGGTC
TCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGC
TGCAAGGGAGCTTGTCGAGACAACCAAAGTTGAGGTAGATGGAATGAAAGTTGAGCTTCC
TGAAGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATAC
GGACACTATCCATGATACCATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAA
CCGTGTATATGTGCATCTATTTTATTGTGTATTTAGAATGTGTTGTATCGTTATAAATCT
TTAATTTTACACATGTATTTAAAGAAAAAAAAAA

consensusID : consensus_5475#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [TTGTACATGCTTATTTCAAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGTGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACAATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATA]

[+] EMBL CF314137             [TTGTACATGCTTATTTCAAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGTGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCATGATACAATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAATA]




>consensus_5475#2
TTGTACATGCTTATTTCAAAAACTCAGCTCAAAATGGCTTCTAGGTCTCCTGTGCTGCTG
TTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCGCTGCAAGGGAGCTT
GTCGAGACAACCAAAGTTGTGGTAGATGGAATGAAAGTTGAGCTTCCTGAAGGCCGCAAA
GGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACATACGGACACTATCCA
TGATACAATTGTATATTCTGGATATATAAAAGGATTAATTTAGCTTAAAAAAAAAAAAAA
AAAAAAAAAAAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5475#1      AAAAACCATTCCACCAGTCGCAAATCCTCTCTTAATTAGCTACCACCTAGCTTGGCACCA 60
consensus_5475#2      ------------------------------------------------------------
consensus_5475#0      ------------------------------------------------------------
                                                                                  

consensus_5475#1      ACAATTCAACTTTTACACTCATACCTGCTATCTCACTATATATAAGATGTCTCATGGGTT 120
consensus_5475#2      ------------------------------------------------------------
consensus_5475#0      ------------------------------------------------------------
                                                                                  

consensus_5475#1      TCATGGTGTCCCAATCGTACATGCTTATTTCAAAA-CTCAGCTCAAAATGGCTTCTAGGT 179
consensus_5475#2      --------------TTGTACATGCTTATTTCAAAAACTCAGCTCAAAATGGCTTCTAGGT 46
consensus_5475#0      -------------ATCGTA--GGCTTGTTAGAAAAGATC-GCTCAAAATGGCTTCTAGGT 44
                                    * ***   **** **  ****  ** ********************

consensus_5475#1      CTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCG 239
consensus_5475#2      CTCCTGTGCTGCTGTTTGCGTTGATGGTTTGTCTTGTCATCGTCTCGCAGGGTGTCCTCG 106
consensus_5475#0      CTCTTGTGTTGATGTTAGTGTTGATGGTTTCTCTTGTCATCGTCTCGCAGGGTGTCCTTG 104
                      *** **** ** **** * *********** *************************** *

consensus_5475#1      CTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGAGGTAGATGGAATGAAAGTTGAGCTTC 299
consensus_5475#2      CTGCAAGGGAGCTTGTCGAGACAACCAAAGTTGTGGTAGATGGAATGAAAGTTGAGCTTC 166
consensus_5475#0      CTGCAAGGGAGCTTGCAGAGAAAACCAAAGTGGATGTAGATGGAATGAATGTCGACCTTC 164
                      ***************  **** ********* *  ************** ** ** ****

consensus_5475#1      CTGAAG-CCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACAT 358
consensus_5475#2      CTGAAGGCCGCAAAGGTGCAGCTGCTGTCTCGGGGTATGGAGGCGGCTGGCCAGGGACAT 226
consensus_5475#0      CTAAAGGCCGCAAAGGTGCAGTTGCAGTCTCAGGGTACGGTGGTGGTTGGTCAGGGTCAT 224
                      ** *** ************** *** ***** ***** ** ** ** *** ***** ***

consensus_5475#1      ACGG------ACACTATCCATGATACCATTGTATATTCTGGATATATAAAAGGATTAATT 412
consensus_5475#2      ACGG------ACACTATCCATGATACAATTGTATATTCTGGATATATAAAAGGATTAATT 280
consensus_5475#0      ACGGTGGCAGACACTATCCATGATACCCCTAAATATCATGGATATATAA--GGATTAATT 282
                      ****      ****************   *  ****  ***********  *********

consensus_5475#1      TAGCTTAA------CCGTGTATATGTGCATCTATTTTATTGTGTATTTAGAATGTGTTGT 466
consensus_5475#2      TAGCTTAA------AAAAAAAAAAAAAAAAAAAA---AAAAAATA--------------- 316
consensus_5475#0      TAGCTTAATTAACCCCTTGTATATGTGCTCCTATTGTACTGTGTATTTACA-TGTGTTGT 341
                      ********            * *         *    *     **               

consensus_5475#1      ATCGTTATAAATCTTTAATTTTACACATGTATTTAAAGAAAAAAAAAA------------ 514
consensus_5475#2      ------------------------------------------------------------
consensus_5475#0      GTTTGTATTAAAGTTACATTTGTTGGGTCAGTCTATAGGGTACTCGTTGATTCAGTTTAA 401
                                                                                  

consensus_5475#1      ------------------------------------------------------------
consensus_5475#2      ------------------------------------------------------------
consensus_5475#0      ATCAACTAAACCAGAAAAATGTAGCTTCCAAGCTCATATTGTATGTTTGTTTGATATCCT 461
                                                                                  

consensus_5475#1      ------------------------------------------------------------
consensus_5475#2      ------------------------------------------------------------
consensus_5475#0      TTCATAGTTTTAATACATCAGGTAATTATTAGCCTTAGAAGAACATTCCACCTTGTATTT 521
                                                                                  

consensus_5475#1      ------------------------------------------------
consensus_5475#2      ------------------------------------------------
consensus_5475#0      AGCACGTTTATGATGACAAGTCCTATATATTTATAAAGTTTGTTTTCA 569