These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5480#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1093 fasta sequence [TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACTCC---GGCGCCGCC-GCCGCCGCCGCCG-CGGCGATGGG-GCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGG-CGGGGAGGAGGAGGAGCGGGAGGACCTGCGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAA-GGGGTCCGGGAGGATCACGCCGCGCGGGCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATGATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGTGTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTACTAGTAAAAAAAATTCCC] [+] EMBL AK108944 [TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACTCC GGCGCCGCC GCCGCCGCCGCCG CGGCGATGGG GCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGG CGGGGAGGAGGAGGAGCGGGAGGACCTGCGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAA GGGGTCCGGGAGGATCACGCCGCGCGGGCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATGATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGTGTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTACTAGTAAAAAAAATTCCC] [+] EMBL CA754937 [ AGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACCCCGNNGGCG GGCCGGCCGGCGNCGNCGNNGGNGATGGGNGCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGGCCGGGAAGAAGAAGAANCGNNAGGACCTGNCGCGCGCGTTCGGGGCGTTCGAGGCGGTGAAGGGGGTCCGGGA GATCACGCCGCGCGGGCTGCAGNGCGTGCTCA CCAGCTCGGGGACAAAGCGTCCGTCGCCGAGTGCGA ] consensusID : consensus_5480#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCCGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCACGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACAGCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGATCTGGCGTTCGANGACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGACCGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGATACGCCCGCGG] [+] EMBL AA751542 [GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCCGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCACGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACAGCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGATCTGGCGTTCGANGACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGACCGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGATACGCCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5480#0 -TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTC 59 consensus_5480#1 GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTC 60 * **************************************************** consensus_5480#0 TCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGA 119 consensus_5480#1 TCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGA 120 ******************** *************************************** consensus_5480#0 GCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCT 179 consensus_5480#1 GCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCT 180 ****************************************************** ***** consensus_5480#0 CGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGT 239 consensus_5480#1 CGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGT 240 ************************************************************ consensus_5480#0 CGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCG 299 consensus_5480#1 CGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCC 300 **************************************************** ****** consensus_5480#0 GCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCG 359 consensus_5480#1 GCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCA 360 ***************************************** ****** ********** consensus_5480#0 CGTCCATGGGCGACGACTCCGGCGCCGCCGCCGCCGCCGCCGCGGCGATGGGGCTCGACG 419 consensus_5480#1 CGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACA 420 ************** *********** ***************************** ** consensus_5480#0 GCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGG 479 consensus_5480#1 GCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGAT-CTGGCGTTCGANG 479 ************* ** * * **** *********** ******* *********** * consensus_5480#0 ACTTCGTGCGGATCGTG-GAGCGGAAGGGCGGGGAGGAGGAGGAGCGGG-AGGACCTG-- 535 consensus_5480#1 ACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGAC 539 ***** *********** * ***** ******** ** ** ** **** * ****** consensus_5480#0 CGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAAGGGGTCCGGGAGGATCACGCCGCGCGGG 595 consensus_5480#1 CGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGAT-ACGCC-CGCGG- 596 ** * ************** *** ** ***** ****** *** *** ***** ***** consensus_5480#0 CTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATG 655 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 ATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATG 715 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 ATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTC 775 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 GCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTG 835 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 CTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGT 895 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 GTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGC 955 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 GCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCAC 1015 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 GAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTA 1075 consensus_5480#1 ------------------------------------------------------------ consensus_5480#0 CTAGTAAAAAAAATTCCC 1093 consensus_5480#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||