Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5480 cluster # 5480       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5480#0 length = 1093 sequences # 2  
consensus_5480#1 length = 596 sequences # 1  

consensusID : consensus_5480#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1093
fasta sequence
                              [TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACTCC---GGCGCCGCC-GCCGCCGCCGCCG-CGGCGATGGG-GCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGG-CGGGGAGGAGGAGGAGCGGGAGGACCTGCGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAA-GGGGTCCGGGAGGATCACGCCGCGCGGGCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATGATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGTGTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTACTAGTAAAAAAAATTCCC]

[+] EMBL AK108944             [TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACTCC   GGCGCCGCC GCCGCCGCCGCCG CGGCGATGGG GCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGG CGGGGAGGAGGAGGAGCGGGAGGACCTGCGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAA GGGGTCCGGGAGGATCACGCCGCGCGGGCTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATGATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGTGTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTACTAGTAAAAAAAATTCCC]
[+] EMBL CA754937             [                                AGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGCGTCCATGGGCGACGACCCCGNNGGCG GGCCGGCCGGCGNCGNCGNNGGNGATGGGNGCTCGACGGCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGACTTCGTGCGGATCGTGGAGCGGAAGGGCCGGGAAGAAGAAGAANCGNNAGGACCTGNCGCGCGCGTTCGGGGCGTTCGAGGCGGTGAAGGGGGTCCGGGA GATCACGCCGCGCGGGCTGCAGNGCGTGCTCA CCAGCTCGGGGACAAAGCGTCCGTCGCCGAGTGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]


>consensus_5480#0 TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCT CTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAG CTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCTC GCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTC GGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCGG CCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCGC GTCCATGGGCGACGACTCCGGCGCCGCCGCCGCCGCCGCCGCGGCGATGGGGCTCGACGG CGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGGA CTTCGTGCGGATCGTGGAGCGGAAGGGCGGGGAGGAGGAGGAGCGGGAGGACCTGCGGCG CGCGTTCGGGGCGTTCGAGGCGGTGAAGGGGTCCGGGAGGATCACGCCGCGCGGGCTGCA GCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATGATAAG CGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATGATGAG CCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTCGCCGC GTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTGCTGTT GTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGTGTGTG TTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGCGCGCG GCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCACGAACG CGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTACTAGT AAAAAAAATTCCC



consensusID : consensus_5480#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence
                              [GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCCGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCACGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACAGCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGATCTGGCGTTCGANGACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGACCGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGATACGCCCGCGG]

[+] EMBL AA751542             [GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTCTCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGAGCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCTCGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGTCGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCCGCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCACGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACAGCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGATCTGGCGTTCGANGACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGACCGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGATACGCCCGCGG]


>consensus_5480#1 GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTC TCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGA GCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCT CGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGT CGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCC GCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCA CGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACA GCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGATCTGGCGTTCGANGA CTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGACC GCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGATACGCCCGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5480#0      -TAAGCTCGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTC 59
consensus_5480#1      GGCACGAGGGGAATCCTAAGTAAGTGAAAGCTTAGCTAGCTTCGCATAAATCCAGCTCTC 60
                         *    ****************************************************

consensus_5480#0      TCTTGCTAATGGCGGGCGTCGAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGA 119
consensus_5480#1      TCTTGCTAATGGCGGGCGTCCAGGTCTCCAAGCCGTCGAGGCGCCTGTCGCCGAAGGGGA 120
                      ******************** ***************************************

consensus_5480#0      GCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGCCGTCT 179
consensus_5480#1      GCTTCAAGCTGAGCCTGCCCAGCCTGCTGGCGTGCGGGCAGTGCAAGGCCACGGNCGTCT 180
                      ****************************************************** *****

consensus_5480#0      CGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGT 239
consensus_5480#1      CGCCGCCGGAGTCCCCCACGGGCGTCGGCGCGAGGTCGTTCTCCTCGTCGGCGTCGTCGT 240
                      ************************************************************

consensus_5480#0      CGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGAGATCTTCG 299
consensus_5480#1      CGGCGGGGACGTCCCGGGGGAGGGAGCGCGACCGCCTGGCGGAGCTCCGGGANATCTTCC 300
                      **************************************************** ****** 

consensus_5480#0      GCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACGAGCTCCGCGAGTTCTTCG 359
consensus_5480#1      GCCACTTCGACCGCGACATGGACGGGCGGATCTCCGGCGACNAGCTCCNCGAGTTCTTCA 360
                      ***************************************** ****** ********** 

consensus_5480#0      CGTCCATGGGCGACGACTCCGGCGCCGCCGCCGCCGCCGCCGCGGCGATGGGGCTCGACG 419
consensus_5480#1      CGTCCATGGGCGACAACTCCGGCGCCNCCGCCGCCGCCGCCGCGGCGATGGGGCTCNACA 420
                      ************** *********** ***************************** ** 

consensus_5480#0      GCGCGGCGGGCGGCGGCGAGAGCGGCGGCGGCGGTGGCGGGCTGATGCTGGCGTTCGAGG 479
consensus_5480#1      GCGCGGCGGGCGGNNGCAAAAACGGCNGCGGCGGTGGCNGGCTGAT-CTGGCGTTCGANG 479
                      *************  ** * * **** *********** ******* *********** *

consensus_5480#0      ACTTCGTGCGGATCGTG-GAGCGGAAGGGCGGGGAGGAGGAGGAGCGGG-AGGACCTG-- 535
consensus_5480#1      ACTTCNTGCGGATCGTGTNAACGGAACGGCGGGGANGAAGACGAACGGGGANGACCTGAC 539
                      ***** ***********  * ***** ******** ** ** ** **** * ******  

consensus_5480#0      CGGCGCGCGTTCGGGGCGTTCGAGGCGGTGAAGGGGTCCGGGAGGATCACGCCGCGCGGG 595
consensus_5480#1      CGCCCCGCGTTCGGGGCGTNCGANGCAGTGAANGGGTCCNGGAAGAT-ACGCC-CGCGG- 596
                      ** * ************** *** ** ***** ****** *** *** ***** ***** 

consensus_5480#0      CTGCAGCGCGTGCTCAGCCAGCTCGGCGACGAGGCGTCCGTCGCCGAGTGCGAGGCCATG 655
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      ATAAGCGCCTACGACGACGACGGCGACGGCGAGCTCGACTTCCACGACTTCCACCGCATG 715
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      ATGAGCCAAGACTAAGCTATAGCTCCGCCGTGCGTGCGTGTTCCGCGCGCGCCGTCCGTC 775
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      GCCGCGTCGTCACGAGGAAATTTGCCTCCGCGGGTTCGATCGTGTCTGTTCGTGTGTGTG 835
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      CTGTTGTGTACGTGTTCGTGCGGGTTGTGGGAGGCCGGCTGTGACTATGTGAGATGGAGT 895
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      GTGTGTTTTGGTCGCGTGATCGTATCGATGTGCGTGCGTGCGTGCGTGCGTGCACGCCGC 955
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      GCGCGGCGCGGCGTCGTACGGTTGTCTGCTTCGATCGGTCGATCTATGTATGTGGTGCAC 1015
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      GAACGCGGGACGCCTTAGCAATTTAGCTGTGCTTTGTTTAACACGAAGCCAGCATGAGTA 1075
consensus_5480#1      ------------------------------------------------------------
                                                                                  

consensus_5480#0      CTAGTAAAAAAAATTCCC 1093
consensus_5480#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)