cluster # 5483

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Oryza sativa
cluster # 5483 cluster # 5483 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5483#0 length = 1376 sequences # 1

consensus_5483#1 length = 516 sequences # 2

consensusID : consensus_5483#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1376
fasta sequence

                              [CTCCATTTTGGAGTTCGCAGCAACTGCTCATCTGGGATTGCAGTTGCGGTGATCAAGGATTAAGAGGTTCATCCAAAATGGGGAACTGCGTGGGCTCATCCAAGTGCGCCAGTGCATCGGCTCCACTTGAATCAAAGGTTACGAGAAGCAGCAACTCGACGACGACGACGGACAACACCTCCAAGGCATCGCAGCGCAGCTCGTCGGCGTTCTCGTCGGGGCAGTTCTCGCGAGCCAGCTCCGACGAGTCGTCGGCGGCGCCGTCGCTGTCGTCCCTCAAGTCGTTCAACATGGGCGACCTCCGCGCGGCGACCAAGAACTTCGGTTCCAACTCGTTCCTGGGAGAGGGCGGGTTCGGGTGCGTGTACAAGGGTTGGATCGACGAGCTCACCCTCGCCCCTACCAAGCCCGGCGTCGGCAAGATGGTCGCCATCAAGAAGCTCAAGAAGGAGAGCTTCCAGGGTCACAAGGAGTGGCTGGCAGAGGTGACCTACTTGGGGCAGCTCCACCATGAGAACCTGGTGAAGCTGGTGGGCTACTGCTCGGATTCCGACAGCAACAAGCTGCTCGTCTACGAGTACATGCTCAGAGGCAGCCTCGAGAACCACCTCTTCAGAAGAGGGACGCAGCCGCTGTCGTGGGCGATGCGGGTGAACATCGCGGTGGACGTGGCGAGGGGGCTGTCCTTCTTGCACGGGCTGGAGAACCCCATCATCTTCCGGGACCTCAAGTCGTCCAACGTCCTCCTCGCCGGCGACTACCGGGCCAAGCTGTCGGACTTCGGGCTGGCGCGGAACGGGCCCACCGGCGACAAGAGCCACGTGTCCACCCGCGTCGTCGGCACCAGGGGCTACGCCGCGCCGGAGTACGTCGCCACGGGCCACCTCTCCGTCAAGAGCGACGTCTACAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACGGGGCGCCGCGCGCTCGACGCCGCCCGCGGCGCCACCGCCGAGATGCTCGTCGACTGGGCGAGGCCCCACCTCGGCGATCGCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAG]

[+] EMBL AK106421             [CTCCATTTTGGAGTTCGCAGCAACTGCTCATCTGGGATTGCAGTTGCGGTGATCAAGGATTAAGAGGTTCATCCAAAATGGGGAACTGCGTGGGCTCATCCAAGTGCGCCAGTGCATCGGCTCCACTTGAATCAAAGGTTACGAGAAGCAGCAACTCGACGACGACGACGGACAACACCTCCAAGGCATCGCAGCGCAGCTCGTCGGCGTTCTCGTCGGGGCAGTTCTCGCGAGCCAGCTCCGACGAGTCGTCGGCGGCGCCGTCGCTGTCGTCCCTCAAGTCGTTCAACATGGGCGACCTCCGCGCGGCGACCAAGAACTTCGGTTCCAACTCGTTCCTGGGAGAGGGCGGGTTCGGGTGCGTGTACAAGGGTTGGATCGACGAGCTCACCCTCGCCCCTACCAAGCCCGGCGTCGGCAAGATGGTCGCCATCAAGAAGCTCAAGAAGGAGAGCTTCCAGGGTCACAAGGAGTGGCTGGCAGAGGTGACCTACTTGGGGCAGCTCCACCATGAGAACCTGGTGAAGCTGGTGGGCTACTGCTCGGATTCCGACAGCAACAAGCTGCTCGTCTACGAGTACATGCTCAGAGGCAGCCTCGAGAACCACCTCTTCAGAAGAGGGACGCAGCCGCTGTCGTGGGCGATGCGGGTGAACATCGCGGTGGACGTGGCGAGGGGGCTGTCCTTCTTGCACGGGCTGGAGAACCCCATCATCTTCCGGGACCTCAAGTCGTCCAACGTCCTCCTCGCCGGCGACTACCGGGCCAAGCTGTCGGACTTCGGGCTGGCGCGGAACGGGCCCACCGGCGACAAGAGCCACGTGTCCACCCGCGTCGTCGGCACCAGGGGCTACGCCGCGCCGGAGTACGTCGCCACGGGCCACCTCTCCGTCAAGAGCGACGTCTACAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACGGGGCGCCGCGCGCTCGACGCCGCCCGCGGCGCCACCGCCGAGATGCTCGTCGACTGGGCGAGGCCCCACCTCGGCGATCGCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAG]




>consensus_5483#0
CTCCATTTTGGAGTTCGCAGCAACTGCTCATCTGGGATTGCAGTTGCGGTGATCAAGGAT
TAAGAGGTTCATCCAAAATGGGGAACTGCGTGGGCTCATCCAAGTGCGCCAGTGCATCGG
CTCCACTTGAATCAAAGGTTACGAGAAGCAGCAACTCGACGACGACGACGGACAACACCT
CCAAGGCATCGCAGCGCAGCTCGTCGGCGTTCTCGTCGGGGCAGTTCTCGCGAGCCAGCT
CCGACGAGTCGTCGGCGGCGCCGTCGCTGTCGTCCCTCAAGTCGTTCAACATGGGCGACC
TCCGCGCGGCGACCAAGAACTTCGGTTCCAACTCGTTCCTGGGAGAGGGCGGGTTCGGGT
GCGTGTACAAGGGTTGGATCGACGAGCTCACCCTCGCCCCTACCAAGCCCGGCGTCGGCA
AGATGGTCGCCATCAAGAAGCTCAAGAAGGAGAGCTTCCAGGGTCACAAGGAGTGGCTGG
CAGAGGTGACCTACTTGGGGCAGCTCCACCATGAGAACCTGGTGAAGCTGGTGGGCTACT
GCTCGGATTCCGACAGCAACAAGCTGCTCGTCTACGAGTACATGCTCAGAGGCAGCCTCG
AGAACCACCTCTTCAGAAGAGGGACGCAGCCGCTGTCGTGGGCGATGCGGGTGAACATCG
CGGTGGACGTGGCGAGGGGGCTGTCCTTCTTGCACGGGCTGGAGAACCCCATCATCTTCC
GGGACCTCAAGTCGTCCAACGTCCTCCTCGCCGGCGACTACCGGGCCAAGCTGTCGGACT
TCGGGCTGGCGCGGAACGGGCCCACCGGCGACAAGAGCCACGTGTCCACCCGCGTCGTCG
GCACCAGGGGCTACGCCGCGCCGGAGTACGTCGCCACGGGCCACCTCTCCGTCAAGAGCG
ACGTCTACAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACGGGGCGCCGCGCGCTCGACG
CCGCCCGCGGCGCCACCGCCGAGATGCTCGTCGACTGGGCGAGGCCCCACCTCGGCGATC
GCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATC
CTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTA
GCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATT
TGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGA
TGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGT
GAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAG

consensusID : consensus_5483#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 516
fasta sequence

                              [AACCGCATCATGGACACCAGGCTCGGCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCGGCGCTCGCGCTCCGCTGCCTCCACCACGACCCCAAGCTCCGCCCCGCCATGCCCGACGACGTGCTGCCGCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAGGTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG]

[+] EMBL CB648062             [AACCGCATCATGGACACCAGGCTCGGCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCGGCGCTCGCGCTCCGCTGCCTCCACCACGACCCCAAGCTCCGCCCCGCCATGCCCGACGACGTGCTGCCGCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAGGTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG]
[+] EMBL CB647417             [AACCGCATCATGGACACCAGGCTCGGCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCGGCGCTCGCGCTCCGCTGCCTCCACCACGACCCCAAGCTCCGCCCCGCCATGCCCGACGACGTGCTGCCGCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAGGTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG]




>consensus_5483#1
AACCGCATCATGGACACCAGGCTCGGCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATG
GCGGCGCTCGCGCTCCGCTGCCTCCACCACGACCCCAAGCTCCGCCCCGCCATGCCCGAC
GACGTGCTGCCGCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATCCTCCTCGTCGACC
TCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGT
CTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATTTGTTTGTCAATTT
CATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGATGAACATCTAGCT
ACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAAAATTGTGAAT
TATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAGGTTCAGAAATTCC
ATGCATTTGTGTGCATCATCAGTATAGAGACGATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5483#0      CTCCATTTTGGAGTTCGCAGCAACTGCTCATCTGGGATTGCAGTTGCGGTGATCAAGGAT 60
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      TAAGAGGTTCATCCAAAATGGGGAACTGCGTGGGCTCATCCAAGTGCGCCAGTGCATCGG 120
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      CTCCACTTGAATCAAAGGTTACGAGAAGCAGCAACTCGACGACGACGACGGACAACACCT 180
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      CCAAGGCATCGCAGCGCAGCTCGTCGGCGTTCTCGTCGGGGCAGTTCTCGCGAGCCAGCT 240
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      CCGACGAGTCGTCGGCGGCGCCGTCGCTGTCGTCCCTCAAGTCGTTCAACATGGGCGACC 300
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      TCCGCGCGGCGACCAAGAACTTCGGTTCCAACTCGTTCCTGGGAGAGGGCGGGTTCGGGT 360
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      GCGTGTACAAGGGTTGGATCGACGAGCTCACCCTCGCCCCTACCAAGCCCGGCGTCGGCA 420
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      AGATGGTCGCCATCAAGAAGCTCAAGAAGGAGAGCTTCCAGGGTCACAAGGAGTGGCTGG 480
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      CAGAGGTGACCTACTTGGGGCAGCTCCACCATGAGAACCTGGTGAAGCTGGTGGGCTACT 540
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      GCTCGGATTCCGACAGCAACAAGCTGCTCGTCTACGAGTACATGCTCAGAGGCAGCCTCG 600
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      AGAACCACCTCTTCAGAAGAGGGACGCAGCCGCTGTCGTGGGCGATGCGGGTGAACATCG 660
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      CGGTGGACGTGGCGAGGGGGCTGTCCTTCTTGCACGGGCTGGAGAACCCCATCATCTTCC 720
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      GGGACCTCAAGTCGTCCAACGTCCTCCTCGCCGGCGACTACCGGGCCAAGCTGTCGGACT 780
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      TCGGGCTGGCGCGGAACGGGCCCACCGGCGACAAGAGCCACGTGTCCACCCGCGTCGTCG 840
consensus_5483#1      ------------------------------------------------------------
                                                                                  

consensus_5483#0      GCACCAGGGGCTACGCCGCGCCGGAGTACGTCGCCACGGGCCACCTCTCCGTCAAGAGCG 900
consensus_5483#1      --------------------------------------------------------AACC 4
                                                                              * * 

consensus_5483#0      ACGTCTACAGCTTCGGCGTCGTGCTGCTCGAGCTCCTCACGGGGCGCCGCGCGCTCGACG 960
consensus_5483#1      GCATCATGGACACCAGGCTCG-GCGGCCAGTATCCCAAGAAGCAGGCGCAGGACATGGCG 63
                       * **     *  * *  *** ** **  *    **     *   **   *  *  * **

consensus_5483#0      CCGCCCGCGGCGCCACCGCCGAGATGCTCGTCGACTGGGCGAGGCCCCACCTCGGCGATC 1020
consensus_5483#1      GCGCTCGCG-CTCCGCTGCC----TCCACCACGACC---CCAAGCTCCGCCCCGCCA--T 113
                       *** **** * ** * ***    * * *  ****    * * ** ** ** ** *    

consensus_5483#0      GCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATC 1080
consensus_5483#1      GCCCGACGACGTGCTGCC------GCAGCTGCGCCTGCTGCAGCAGAACACCAAGCCATC 167
                      *** ** *     * **        ** * *   * ** *********************

consensus_5483#0      CTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTA 1140
consensus_5483#1      CTCCTCGTCGACCTCGGCGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTA 227
                      ************************************************************

consensus_5483#0      GCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATT 1200
consensus_5483#1      GCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCATCTCTCAATTACTCCAGTATTATT 287
                      ************************************************************

consensus_5483#0      TGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGA 1260
consensus_5483#1      TGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAATCGA 347
                      ************************************************************

consensus_5483#0      TGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGT 1320
consensus_5483#1      TGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGT 407
                      ************************************************************

consensus_5483#0      GAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAG---- 1376
consensus_5483#1      GAAAATTGTGAATTATATATTGCTAGCTGCAAATTAAGTAGATAATATTATTATAGCTAG 467
                      ********************************************************    

consensus_5483#0      -------------------------------------------------
consensus_5483#1      GTTCAGAAATTCCATGCATTTGTGTGCATCATCAGTATAGAGACGATTG 516