cluster # 5485

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Oryza sativa
cluster # 5485 cluster # 5485 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5485#0 length = 878 sequences # 1

consensus_5485#1 length = 693 sequences # 1
consensus_5485#2 length = 279 sequences # 1

consensusID : consensus_5485#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 878
fasta sequence

                              [TGCAGCCCGCGGCGGTTCGTCCACGGCGAGGTCAAGCCATCCAACGTCCTCCTCGACGCCGACTACAACGCCGTCCTCGCCGACTTCGGCCTCGCCCGCCTCCTCACCATCGCCGGCTGCGCCGACCCTTCCTCCGCCTCGGGCGGCGGCCTCATGGGCTGCGCGCTCCCACCCTACGCCGTCAAGCCCGCCTCCGCCGCCGCGGACCACCACCACCGCCCCAGCGCGTACCGCGCCCCGGAGGCCCGCGCCGTGGGCGCGCGCCCCAGCCAGAAGTCCGACGTCTACTCCTTCGGCGTCGTGCTGCTGGAGCTGCTCACCGGGCGCCCGCCGGAGCACCACGCCTCGCCGTCCGCGTCGACCTCCTCGTCCGCGTCGTTCTCGGGGACCACCACCACGGTCTGCGGCGGCGGCGGCGGCGGCGACCAGGCGCAGGCGGTGCCGGAGGTGGTGAGGTGGGTGCGGCAGGGGTTCGAGGACGCGCGGCCGCTGTCGGAGCTGGCCGACGCGGGGGTGCTGCGCGACGGCGGCGCGCGGAAGGAGGTGGTGGCGGCGTTCCACGTGGCTCTCGGGTGCGTGGAGGCGGACCCGGAGCGGCGGCCGCGGATGAAGGCCGTCGCCGAGAGCCTCGACAAGATTGGGTCGTGAGGAAAGTCGCTCAGAGCTGGGGGGGATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTTTCTTTTAATTTTAATTTTTTATGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCTTTTGCACCATTGTAATTCCTGATAAAAATGCAATTGTTGTAGTATAATATAATATAGAATGAGAACAAGTTTATCTTCTTTGTGAAATAGGAATCTGCTTGTGAA]

[+] EMBL AK108339             [TGCAGCCCGCGGCGGTTCGTCCACGGCGAGGTCAAGCCATCCAACGTCCTCCTCGACGCCGACTACAACGCCGTCCTCGCCGACTTCGGCCTCGCCCGCCTCCTCACCATCGCCGGCTGCGCCGACCCTTCCTCCGCCTCGGGCGGCGGCCTCATGGGCTGCGCGCTCCCACCCTACGCCGTCAAGCCCGCCTCCGCCGCCGCGGACCACCACCACCGCCCCAGCGCGTACCGCGCCCCGGAGGCCCGCGCCGTGGGCGCGCGCCCCAGCCAGAAGTCCGACGTCTACTCCTTCGGCGTCGTGCTGCTGGAGCTGCTCACCGGGCGCCCGCCGGAGCACCACGCCTCGCCGTCCGCGTCGACCTCCTCGTCCGCGTCGTTCTCGGGGACCACCACCACGGTCTGCGGCGGCGGCGGCGGCGGCGACCAGGCGCAGGCGGTGCCGGAGGTGGTGAGGTGGGTGCGGCAGGGGTTCGAGGACGCGCGGCCGCTGTCGGAGCTGGCCGACGCGGGGGTGCTGCGCGACGGCGGCGCGCGGAAGGAGGTGGTGGCGGCGTTCCACGTGGCTCTCGGGTGCGTGGAGGCGGACCCGGAGCGGCGGCCGCGGATGAAGGCCGTCGCCGAGAGCCTCGACAAGATTGGGTCGTGAGGAAAGTCGCTCAGAGCTGGGGGGGATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTTTCTTTTAATTTTAATTTTTTATGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCTTTTGCACCATTGTAATTCCTGATAAAAATGCAATTGTTGTAGTATAATATAATATAGAATGAGAACAAGTTTATCTTCTTTGTGAAATAGGAATCTGCTTGTGAA]




>consensus_5485#0
TGCAGCCCGCGGCGGTTCGTCCACGGCGAGGTCAAGCCATCCAACGTCCTCCTCGACGCC
GACTACAACGCCGTCCTCGCCGACTTCGGCCTCGCCCGCCTCCTCACCATCGCCGGCTGC
GCCGACCCTTCCTCCGCCTCGGGCGGCGGCCTCATGGGCTGCGCGCTCCCACCCTACGCC
GTCAAGCCCGCCTCCGCCGCCGCGGACCACCACCACCGCCCCAGCGCGTACCGCGCCCCG
GAGGCCCGCGCCGTGGGCGCGCGCCCCAGCCAGAAGTCCGACGTCTACTCCTTCGGCGTC
GTGCTGCTGGAGCTGCTCACCGGGCGCCCGCCGGAGCACCACGCCTCGCCGTCCGCGTCG
ACCTCCTCGTCCGCGTCGTTCTCGGGGACCACCACCACGGTCTGCGGCGGCGGCGGCGGC
GGCGACCAGGCGCAGGCGGTGCCGGAGGTGGTGAGGTGGGTGCGGCAGGGGTTCGAGGAC
GCGCGGCCGCTGTCGGAGCTGGCCGACGCGGGGGTGCTGCGCGACGGCGGCGCGCGGAAG
GAGGTGGTGGCGGCGTTCCACGTGGCTCTCGGGTGCGTGGAGGCGGACCCGGAGCGGCGG
CCGCGGATGAAGGCCGTCGCCGAGAGCCTCGACAAGATTGGGTCGTGAGGAAAGTCGCTC
AGAGCTGGGGGGGATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTTTCTTTTA
ATTTTAATTTTTTATGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCTTTTGCAC
CATTGTAATTCCTGATAAAAATGCAATTGTTGTAGTATAATATAATATAGAATGAGAACA
AGTTTATCTTCTTTGTGAAATAGGAATCTGCTTGTGAA

consensusID : consensus_5485#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CAAGGGGGGGTCGTGAGGAAAGTCGCTCAGAGCTGGGGGGATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTTCTTTTAATTTTAATTTTTTATGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCTTTTGCACCATTGTAATTCCTGATAAAAATGCAATTGTTGTAGCACTGGTGGAGAAAGGGTTATTACTACCGGTTCGTAACCCCCCTATAGTCCCGGTTTTCGAACCGGGACTACGAATCCGGGACTAAAGATAGCTATCTTTAGTCCCGGGTAAAAAAACCGGGAGTAAAAATCCATTTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGATAAAGCATCTTTAGTCCCGGTTGGTATTACCAACCTGGACTAAAGAGGCTAATCCGGTTGCTCTTTTCGGTTCCTCTTTATTATTTTTTTTTCTTCATTATTTTTAAATATATTGATTTCACCCCATTCCATCCCCAAAATCCCAAATCAATCATCCTCAAATTGCCTCCAAATCCACAAATCGATCATCTCAAATACTCAAATACATCACAAAATCTTAAAAAAAAAATTACATCACAACTTCTACAAAATTCATCACATATTCACATCACACACAAATCAAATACATCACACAACAATCTCAGATCCAATCAAATACATTTCACACAACAATCTCAA]

[+] EMBL CA764191             [CAAGGGGGGGTCGTGAGGAAAGTCGCTCAGAGCTGGGGGGATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTTCTTTTAATTTTAATTTTTTATGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCTTTTGCACCATTGTAATTCCTGATAAAAATGCAATTGTTGTAGCACTGGTGGAGAAAGGGTTATTACTACCGGTTCGTAACCCCCCTATAGTCCCGGTTTTCGAACCGGGACTACGAATCCGGGACTAAAGATAGCTATCTTTAGTCCCGGGTAAAAAAACCGGGAGTAAAAATCCATTTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGATAAAGCATCTTTAGTCCCGGTTGGTATTACCAACCTGGACTAAAGAGGCTAATCCGGTTGCTCTTTTCGGTTCCTCTTTATTATTTTTTTTTCTTCATTATTTTTAAATATATTGATTTCACCCCATTCCATCCCCAAAATCCCAAATCAATCATCCTCAAATTGCCTCCAAATCCACAAATCGATCATCTCAAATACTCAAATACATCACAAAATCTTAAAAAAAAAATTACATCACAACTTCTACAAAATTCATCACATATTCACATCACACACAAATCAAATACATCACACAACAATCTCAGATCCAATCAAATACATTTCACACAACAATCTCAA]




>consensus_5485#1
CAAGGGGGGGTCGTGAGGAAAGTCGCTCAGAGCTGGGGGGATGATGTGCATGGTTGGTTT
CTCTGTTTTTCTTTTTTTTTCTTTTAATTTTAATTTTTTATGTTTTATTTTTTTGCCCTA
TTATTTTTTTTGTCTTCCTTTTGCACCATTGTAATTCCTGATAAAAATGCAATTGTTGTA
GCACTGGTGGAGAAAGGGTTATTACTACCGGTTCGTAACCCCCCTATAGTCCCGGTTTTC
GAACCGGGACTACGAATCCGGGACTAAAGATAGCTATCTTTAGTCCCGGGTAAAAAAACC
GGGAGTAAAAATCCATTTTTAGTCCCGGTTGGTGTTACCAACCGGGACTAAAGATAAAGC
ATCTTTAGTCCCGGTTGGTATTACCAACCTGGACTAAAGAGGCTAATCCGGTTGCTCTTT
TCGGTTCCTCTTTATTATTTTTTTTTCTTCATTATTTTTAAATATATTGATTTCACCCCA
TTCCATCCCCAAAATCCCAAATCAATCATCCTCAAATTGCCTCCAAATCCACAAATCGAT
CATCTCAAATACTCAAATACATCACAAAATCTTAAAAAAAAAATTACATCACAACTTCTA
CAAAATTCATCACATATTCACATCACACACAAATCAAATACATCACACAACAATCTCAGA
TCCAATCAAATACATTTCACACAACAATCTCAA

consensusID : consensus_5485#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [GTAGTCCCGGTTNATAACCCCCCTTTAGTCCCGGTTTTCCAACCGGGACTACGAATCCGGGACTAAANATCGCTATCTTTAGTCCCGGTTCAAATAATAGTCCCGGTTGGTAACCCCNACCGGGAGTAAAAANAGGGAATCTACCAACCGGGACTAAAAAGGGGAANCGACAGTTCCNCGANATTTTTTTTATTATTATTTTGTTGTTGATTTGCTAATGGCTAGTGTTAATCTATGTATTTTCTCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU174521             [GTAGTCCCGGTTNATAACCCCCCTTTAGTCCCGGTTTTCCAACCGGGACTACGAATCCGGGACTAAANATCGCTATCTTTAGTCCCGGTTCAAATAATAGTCCCGGTTGGTAACCCCNACCGGGAGTAAAAANAGGGAATCTACCAACCGGGACTAAAAAGGGGAANCGACAGTTCCNCGANATTTTTTTTATTATTATTTTGTTGTTGATTTGCTAATGGCTAGTGTTAATCTATGTATTTTCTCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_5485#2
GTAGTCCCGGTTNATAACCCCCCTTTAGTCCCGGTTTTCCAACCGGGACTACGAATCCGG
GACTAAANATCGCTATCTTTAGTCCCGGTTCAAATAATAGTCCCGGTTGGTAACCCCNAC
CGGGAGTAAAAANAGGGAATCTACCAACCGGGACTAAAAAGGGGAANCGACAGTTCCNCG
ANATTTTTTTTATTATTATTTTGTTGTTGATTTGCTAATGGCTAGTGTTAATCTATGTAT
TTTCTCCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5485#1      ------------------------------------------------------------
consensus_5485#2      ------------------------------------------------------------
consensus_5485#0      TGCAGCCCGCGGCGGTTCGTCCACGGCGAGGTCAAGCCATCCAACGTCCTCCTCGACGCC 60
                                                                                  

consensus_5485#1      ------------------------------------------------------------
consensus_5485#2      ------------------------------------------------------------
consensus_5485#0      GACTACAACGCCGTCCTCGCCGACTTCGGCCTCGCCCGCCTCCTCACCATCGCCGGCTGC 120
                                                                                  

consensus_5485#1      -------------------CAAGGGGGGGTCGTGAGGAAAGT-CGCTCAGAGCTGGGGGG 40
consensus_5485#2      ------------------------------------------------------------
consensus_5485#0      GCCGACCCTTCCTCCGCCTCGGGCGGCGGCCTCATGGGCTGCGCGCTCCCACCCTACGCC 180
                                                                                  

consensus_5485#1      ATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTTCTTTTAATTTTAATTTTTTA 100
consensus_5485#2      ------------------------------------------------------------
consensus_5485#0      GTCAAGCCCGCCTCCGCCGCCGCGGACCACCACCACCGCCCCAGCGCGTACCGCGCCCCG 240
                                                                                  

consensus_5485#1      TGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCTTTTGCACCATTGTAATTCCTG 160
consensus_5485#2      ------------------------------------------------------------
consensus_5485#0      GAGGCCCGCGCCGTGGGCGCGCGCCCCAGCCAGAAGTCCGACGTCTACTCCTTCGGCGTC 300
                                                                                  

consensus_5485#1      ATAAAAATGCAATTGTTGTAGCACTGGTGGAGAAAGGGTTATTACTACCGGTTCGTAACC 220
consensus_5485#2      -----------------------------------------GTAGTCCCGGTTNATAACC 19
consensus_5485#0      GTGCTGCTGGAGCTGCTCACCGGGCGCCCGCCGGAGCACCACGCCTCGCCGTCCGCGTCG 360
                                                                   *  * **      * 

consensus_5485#1      CCCCTATAGTCC---CGGTTTTCGA--ACCGGGACTACGAATC-CGGGACTAAAGATAGC 274
consensus_5485#2      CCCCTTTAGTCC---CGGTTTTCCA--ACCGGGACTACGAATC-CGGGACTAAANATCGC 73
consensus_5485#0      ACCTCCTCGTCCGCGTCGTTCTCGGGGACCACCACCACGGTCTGCGGCGGCGGCGGCGGC 420
                       **   * ****     *** **    ***   ** ***     ***           **

consensus_5485#1      TATCTTTAGTCCCGGGTAAAAAAACCGGGAGTAAAAATCCATTTTTAGTCCCGGTT-GGT 333
consensus_5485#2      TATCTTTAGTCCCGGTTCAAATAA---------------------TAGTCCCGGTT-GGT 111
consensus_5485#0      GGCGACCAGGCGCAGGCGGTGCCGGAGGTGGTGAGG---TGGGTGCGGCAGGGGTTCGAG 477
                             ** * * *                                *    **** *  

consensus_5485#1      GTTAC-CAACCGGGACTAAAGATAAAGCATCTTTAGTCCCGGTTGGTATTACCAACCTGG 392
consensus_5485#2      AACCC-CNACCGGGAGTAAAAANAGGGAATCT------------------ACCAACCGGG 152
consensus_5485#0      GACGCGCGGCCGCTGTCGGAGCTGGCCGACGCGGGGGTGCTGC----GCGACGGCGGCGC 533
                          * *  ***       *        *                     **      * 

consensus_5485#1      ACTAAAGAGGCTAATCCGGTTGCTCTTTTCGGTTCCTC--TTTATTATTTTTTTTTCTTC 450
consensus_5485#2      ACTAAAAAGGGGAANC-GACAGTTCCNCGANATTTTT---TTTATTATTATTTTGTTGTT 208
consensus_5485#0      GCGGAAGGAGGTGGTGGCGGCGTTCCACGTGGCTCTCGGGTGCGTGGAGGCGGACCCGGA 593
                       *  **   *           * **        *      *   *               

consensus_5485#1      ATTATTTTTAAATATATTGATT-TCACCCCATTCCATCCCCAAA----ATCCCAAATCAA 505
consensus_5485#2      GATTTGCTAATGGCTAGTGTTAATCTATGTATTTTCTCCCNAAA----AAAAAAAAAAAA 264
consensus_5485#0      GCGGCGGCCGCGGATGAAGGCCGTCGCCGAGAGCCTCGACAAGATTGGGTCGTGAGGAAA 653
                                    *   *    **              * * *          *   **

consensus_5485#1      TCATCCTCAAATTGCCTCCAA--ATCCACAAATCGATCATCTCAAATACTCAAATACATC 563
consensus_5485#2      AAAAAAAAAAAAAAA--------------------------------------------- 279
consensus_5485#0      GTCGCTCAGAGCTGGGGGGGATGATGTGCATGGTTGGTTTCTCTGTTTTTCTTTTTTTTT 713
                               *                                                  

consensus_5485#1      ACAAAATCTTAAAAAAAAAATTACATCACAACTTCTACAAAATTCATCACATATTCACAT 623
consensus_5485#2      ------------------------------------------------------------
consensus_5485#0      TCTTTTAATTTTAATTTTTTATGTTTTATTTTTTTGCCCTATTATTTTTTTTGTCTTCCT 773
                                                                                  

consensus_5485#1      CACACACAAATCAAATACATCACACAACAATCTCAGATCCAATCAAATACATTTCACACA 683
consensus_5485#2      ------------------------------------------------------------
consensus_5485#0      TTTGCACCATTGTAATTCCTGATAAAAATGCAATTGTTGTAGTATAATATAATATAGAAT 833
                                                                                  

consensus_5485#1      ACAATCTCAA----------------------------------- 693
consensus_5485#2      ---------------------------------------------
consensus_5485#0      GAGAACAAGTTTATCTTCTTTGTGAAATAGGAATCTGCTTGTGAA 878