cluster # 5486

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Oryza sativa
cluster # 5486 cluster # 5486 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5486#0 length = 920 sequences # 2

consensus_5486#1 length = 644 sequences # 1

consensusID : consensus_5486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 920
fasta sequence

                              [TGCCCAAGGGGAAGGGAAAGGCGTCTTCCTCGACACGATTCCCCTCTCCCACCCAAAACCCTACTGCGCCGCCGCCTCCTCTGATGAGGTGATCTCCCCTCTCCTCGCTGGCCGCGTCGACTCCGAGCTTCACCTGTCGGTATTCGAATACTACCTCTTCTGGTTCGCGTACTACCCCATCTCAGCTGCCACGGCCAAGGCCACAGGAATGGCTGCGGCTCGGGCCCCAAAAATTCCGCCCTCCATTTCAGAACAATCACTTAAGTCGCTCGGCCGCATTGAGAGCTGGATGTCCACCCTAGGTTCATCAGCCGGACGCAATCTGGGTCAGAAGCTAGAGAGCTCGCTATATCTGAAGCTTCTGTACTCCTACCTTAAGGAGTTCGTGCCCAGCGGATGTGTACCGCCGCGTAATATGGGTGGAACTCTGCTGCATCGAACTGTCAATGATGGTATTGATGCTGCTGAATCCTTCAGGCGAGCTGAGTTCTTCGTGCACACACTCATCCAGTTCTGGCTTGTTGGAGATGACTTCTCGCCACTGGCTGTGCAGACTTGCCGTGCATATGGGCTCCCTTTACTGTCTCTTCAGTCTCATGCAAATGCCACATTGGTTGAGCAGCCGCCAGCACCAGGACTCGGCGATGCGGTGAAGCTTTTTGTGATGTATATGAACAGGATCAATGCTTCTGTGGATATAGATGCGCCAAATGTCTTCGAGGGAATATCTTCATGGAGGGAGGCATGCAACAGCCCTGTTGGATACTGGAATCCATTGATACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTGCCCATGGGTGTAGAATAAAAATGTGCAAGGTTTCTTGCATGAAATCTTAAGGGCAAGGAACTCAGAGGTGATTGGAGCGATATTGCTCTCAGTTG]

[+] EMBL AK100157             [TGCCCAAGGGGAAGGGAAAGGCGTCTTCCTCGACACGATTCCCCTCTCCCACCCAAAACCCTACTGCGCCGCCGCCTCCTCTGATGAGGTGATCTCCCCTCTCCTCGCTGGCCGCGTCGACTCCGAGCTTCACCTGTCGGTATTCGAATACTACCTCTTCTGGTTCGCGTACTACCCCATCTCAGCTGCCACGGCCAAGGCCACAGGAATGGCTGCGGCTCGGGCCCCAAAAATTCCGCCCTCCATTTCAGAACAATCACTTAAGTCGCTCGGCCGCATTGAGAGCTGGATGTCCACCCTAGGTTCATCAGCCGGACGCAATCTGGGTCAGAAGCTAGAGAGCTCGCTATATCTGAAGCTTCTGTACTCCTACCTTAAGGAGTTCGTGCCCAGCGGATGTGTACCGCCGCGTAATATGGGTGGAACTCTGCTGCATCGAACTGTCAATGATGGTATTGATGCTGCTGAATCCTTCAGGCGAGCTGAGTTCTTCGTGCACACACTCATCCAGTTCTGGCTTGTTGGAGATGACTTCTCGCCACTGGCTGTGCAGACTTGCCGTGCATATGGGCTCCCTTTACTGTCTCTTCAGTCTCATGCAAATGCCACATTGGTTGAGCAGCCGCCAGCACCAGGACTCGGCGATGCGGTGAAGCTTTTTGTGATGTATATGAACAGGATCAATGCTTCTGTGGATATAGATGCGCCAAATGTCTTCGAGGGAATATCTTCATGGAGGGAGGCATGCAACAGCCCTGTTGGATACTGGAATCCATTGATACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTGCCCATGGGTGTAGAATAAAAATGTGCAAGGTTTCTTGCATGAAATCTTAAGGGCAAGGAACTCAGAGGTGATTGGAGCGATATTGCTCTCAGTTG]
[+] EMBL CB483510             [                                                                                                                                                          CTCTTCTGGTTCGCGTACTACCCCATCTCAGCTGCCACGG CAAGGCCACAGGAATGGCTGCGGCTCGGGCCCCAAAAATTCCG CCTCCATTTCAGAACAATCACTTAAGTCGCTCGGCCGCATTGAGAGCTGGATGTCCACCCTAGGTTCATCAGCCGGACGCAATCTGGGTCAGAAGCTAGAGAGCTCGCTATATCTGAAGCTTCTGTACTCCTACCTTAAGGAGTTCGTGCCCAGCGGATGTGTACCGCCGCGTAATATGGGTGGAACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_5486#0
TGCCCAAGGGGAAGGGAAAGGCGTCTTCCTCGACACGATTCCCCTCTCCCACCCAAAACC
CTACTGCGCCGCCGCCTCCTCTGATGAGGTGATCTCCCCTCTCCTCGCTGGCCGCGTCGA
CTCCGAGCTTCACCTGTCGGTATTCGAATACTACCTCTTCTGGTTCGCGTACTACCCCAT
CTCAGCTGCCACGGCCAAGGCCACAGGAATGGCTGCGGCTCGGGCCCCAAAAATTCCGCC
CTCCATTTCAGAACAATCACTTAAGTCGCTCGGCCGCATTGAGAGCTGGATGTCCACCCT
AGGTTCATCAGCCGGACGCAATCTGGGTCAGAAGCTAGAGAGCTCGCTATATCTGAAGCT
TCTGTACTCCTACCTTAAGGAGTTCGTGCCCAGCGGATGTGTACCGCCGCGTAATATGGG
TGGAACTCTGCTGCATCGAACTGTCAATGATGGTATTGATGCTGCTGAATCCTTCAGGCG
AGCTGAGTTCTTCGTGCACACACTCATCCAGTTCTGGCTTGTTGGAGATGACTTCTCGCC
ACTGGCTGTGCAGACTTGCCGTGCATATGGGCTCCCTTTACTGTCTCTTCAGTCTCATGC
AAATGCCACATTGGTTGAGCAGCCGCCAGCACCAGGACTCGGCGATGCGGTGAAGCTTTT
TGTGATGTATATGAACAGGATCAATGCTTCTGTGGATATAGATGCGCCAAATGTCTTCGA
GGGAATATCTTCATGGAGGGAGGCATGCAACAGCCCTGTTGGATACTGGAATCCATTGAT
ACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTGCCCATGGGTGTAGAA
TAAAAATGTGCAAGGTTTCTTGCATGAAATCTTAAGGGCAAGGAACTCAGAGGTGATTGG
AGCGATATTGCTCTCAGTTG

consensusID : consensus_5486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [TGCGGTGAAGCTTTTTGTGATGTATATGAACAGGATCAATGCTTCTGTGGATATAGATGCGCCAAATGTCTTCGAGGGAATATCTTCATGGAGGGAGGCATGCAACAGCCCTGTTGGATACTGGAATCCATTGATACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTGCCCCATGGGTGTAGAAATAAAGAATGTTGCACAGGTTTTCTCTGCATGGATAGTCTATATGGAGCCATGGAAGGCTCAGAAGGATGATTTGGATGCGTATGATCTGCCTCCTCCAGGTTGCCACAATGTGCACCGAGTTACTGAGGGAAAGAGGCAGGTGTCTGAAGCAGTGTACTCTCCAGAATGGGAGAACTTTGTGCTGTCCAACTACTTGTTCTACAGTTCTTTGGTCGTTCATTTCCTGGGGTTTGCACATAAATTTATCCACTCTGATGTTTCCTCAGTGTTGCAGATGGTATCAAAGGTAAGTGAATAATTGCTCCGTCCTTACTACAGCATATGCCACTATGGTCTTTGTTTTCGTCCTTAACTGTCATGTTATCCTTGGTACATATTGTTGTCTTAAGTATGAAGTAGCTGAACATGCACTCATGCAGTCATTTACTAAATTAGATTCCACGTAC]

[+] EMBL CF306997             [TGCGGTGAAGCTTTTTGTGATGTATATGAACAGGATCAATGCTTCTGTGGATATAGATGCGCCAAATGTCTTCGAGGGAATATCTTCATGGAGGGAGGCATGCAACAGCCCTGTTGGATACTGGAATCCATTGATACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTGCCCCATGGGTGTAGAAATAAAGAATGTTGCACAGGTTTTCTCTGCATGGATAGTCTATATGGAGCCATGGAAGGCTCAGAAGGATGATTTGGATGCGTATGATCTGCCTCCTCCAGGTTGCCACAATGTGCACCGAGTTACTGAGGGAAAGAGGCAGGTGTCTGAAGCAGTGTACTCTCCAGAATGGGAGAACTTTGTGCTGTCCAACTACTTGTTCTACAGTTCTTTGGTCGTTCATTTCCTGGGGTTTGCACATAAATTTATCCACTCTGATGTTTCCTCAGTGTTGCAGATGGTATCAAAGGTAAGTGAATAATTGCTCCGTCCTTACTACAGCATATGCCACTATGGTCTTTGTTTTCGTCCTTAACTGTCATGTTATCCTTGGTACATATTGTTGTCTTAAGTATGAAGTAGCTGAACATGCACTCATGCAGTCATTTACTAAATTAGATTCCACGTAC]




>consensus_5486#1
TGCGGTGAAGCTTTTTGTGATGTATATGAACAGGATCAATGCTTCTGTGGATATAGATGC
GCCAAATGTCTTCGAGGGAATATCTTCATGGAGGGAGGCATGCAACAGCCCTGTTGGATA
CTGGAATCCATTGATACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTG
CCCCATGGGTGTAGAAATAAAGAATGTTGCACAGGTTTTCTCTGCATGGATAGTCTATAT
GGAGCCATGGAAGGCTCAGAAGGATGATTTGGATGCGTATGATCTGCCTCCTCCAGGTTG
CCACAATGTGCACCGAGTTACTGAGGGAAAGAGGCAGGTGTCTGAAGCAGTGTACTCTCC
AGAATGGGAGAACTTTGTGCTGTCCAACTACTTGTTCTACAGTTCTTTGGTCGTTCATTT
CCTGGGGTTTGCACATAAATTTATCCACTCTGATGTTTCCTCAGTGTTGCAGATGGTATC
AAAGGTAAGTGAATAATTGCTCCGTCCTTACTACAGCATATGCCACTATGGTCTTTGTTT
TCGTCCTTAACTGTCATGTTATCCTTGGTACATATTGTTGTCTTAAGTATGAAGTAGCTG
AACATGCACTCATGCAGTCATTTACTAAATTAGATTCCACGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5486#0      TGCCCAAGGGGAAGGGAAAGGCGTCTTCCTCGACACGATTCCCCTCTCCCACCCAAAACC 60
consensus_5486#1      ------------------------------------------------------------
                                                                                  

consensus_5486#0      CTACTGCGCCGCCGCCTCCTCTGATGAGGTGATCTCCCCTCTCCTCGCTGGCCGCGTCGA 120
consensus_5486#1      ------------------------TGCGGTGAAGCTTTTTGTGAT--GTATATGAACAGG 34
                                              ** *****       * *  *   *    *    * 

consensus_5486#0      CTCCGAGCTTCACCTGTCGGTATTCGAATACTACCTCTTCTGGTTCGCGTACTACCCCAT 180
consensus_5486#1      ATCAATGCTTC---TGTGGATATAGATGCGCCAAATGTCTTCGAGGGAATAT--CTTCAT 89
                       **   *****   *** * ***       * *  * *  * *   *  **   *  ***

consensus_5486#0      CTCAGCTGCCACGGCCAAGGCCACAGGAATGGCTGCGGCTCGGGCCCCAAAAATTCCGCC 240
consensus_5486#1      GGAGGGAGGCATGCAACAGCCCTGTTGGATACTGGAATCCATTGATACAGAGGCCTCTGT 149
                          *  * ** *    ** **    * **    *   *    *   ** *     *   

consensus_5486#0      CTCCATTTCAGAACAATCACTTAAGTCGCTCGGCCGCATTGAGAGCTGGATGTCCACCCT 300
consensus_5486#1      ATCGATTT--------TTGCTCAGGACATTC--TTGTTCTGCCCCATGGGTGTAGAAATA 199
                       ** ****        *  ** * * *  **    *   **     *** ***  *    

consensus_5486#0      AGGTTCATCAGCCGGACGCAATCTGGGTCAGAAG-CTAGAGAGCTCGCTATATCTGAAGC 359
consensus_5486#1      AAGAATGTTGCACAGGTTTTCTCTGCATGGATAGTCTATATGGA--GCCATG---GAAGG 254
                      * *    *    * *      ****  *    ** *** *  *   ** **    **** 

consensus_5486#0      TTCTGTACTCCTACCTTAAGGAGTTCGTGCCCAGCGGATGTGTACCGCCGCGTAATATGG 419
consensus_5486#1      CTCAGAAGGATGATTTGGATGCGTATG-ATCTGCCTCCTCCAGGTTGCCAC--AATGTGC 311
                       ** * *     *  *  * * **  *   *   *   *       *** *  *** ** 

consensus_5486#0      GTGGAACTCTGCTGCATCGAACTGTCAATGATGGTATTGATGCTGCTGAATCCTTCAGGC 479
consensus_5486#1      ACCGAGTT--ACTGAGGGAAAGAGGCA-----GGTGTCTGAAGCAGTGTACTCTCCAGAA 364
                         **  *   ***     **  * **     *** *         ** *  ** ***  

consensus_5486#0      GAGCTGAGTTCTTCGTGCACACACTCATCCAGTTCTGGCTTGTTGGAGATGACTTCTCGC 539
consensus_5486#1      TGG--GAGAACTTTGTGC-------TGTCCAACT---ACTTGTTCTACA-GTTCTTTGGT 411
                        *  ***  *** ****         ****  *    ******  * * *   * * * 

consensus_5486#0      CACTGGCTGTGCAGACTTGCCGTGCATATGGGCTCCCTTTACTGTCTCTTCAGTCTCATG 599
consensus_5486#1      CGTTCATTTCCTGGGGTTTGCACATAAATTTATCCACTCTGATGTTTCCTCAGTGT--TG 469
                      *  *   *     *  **  *    * **     * ** *  *** ** ***** *  **

consensus_5486#0      CAAATGCCACATTGGTTGAGCAGCCGCCAGCACCAGGACTCGGCGATGCGGTGAAGCTTT 659
consensus_5486#1      CAGATGGTATCAAAGGTAAGTGAATAATTGCTCCG----TCCTTACTACAGCATATGCCA 525
                      ** ***  *     * * **         ** **     **     * * *   *     

consensus_5486#0      TTGTGATGTATATGAACAGGATCAATGCTTCTGTGGATATAGATGCGCCAAATGTCTTCG 719
consensus_5486#1      CTATGGTCTTTGTTTTCGTCCTTAACTGTCATGTTATCCTTGGTACAT--ATTGTTGTCT 583
                       * ** * * * *   *    * **   *  ***     * * * *    * ***  ** 

consensus_5486#0      AGGGAATATCTTCATGGAGGGAGGCATGCA-ACAGCCCTGTTGGATACTGGAATCCATTG 778
consensus_5486#1      TAAGTATGAAGTAGCTGAAC-ATGCACTCATGCAGTCATTTACTAAATTAGATTCCACGT 642
                         * **    *    **   * ***  **  *** * * *   * * * ** ****   

consensus_5486#0      ATACAGAGGCCTCTGTATCGATTTTTGCTCAGGACATTCTTGTTCTGCCCATGGGTGTAG 838
consensus_5486#1      AC---------------------------------------------------------- 644
                      *                                                           

consensus_5486#0      AATAAAAATGTGCAAGGTTTCTTGCATGAAATCTTAAGGGCAAGGAACTCAGAGGTGATT 898
consensus_5486#1      ------------------------------------------------------------
                                                                                  

consensus_5486#0      GGAGCGATATTGCTCTCAGTTG 920
consensus_5486#1      ----------------------