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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5488#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 914 fasta sequence
[CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCGCGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTT--GCCCAAGGACATGGTGTCNG--TAGATCCTGAGAGGAAAAGTC-ACTCTG-AGTGGACACCCATGG-GGGTGACTCGCAGGGCATGGCGATAGACAACNGCACGA-CACTTGTGGAGAGAGGGAATATG-CAAC-AGG-AG-TTG-CACGAAAAGAT-TNNT-ATGTA-TA-TATTT-ACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGAGGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGCCACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAATCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAAAACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGGGGGTAAATATAAAA]
[+] EMBL AW155500 [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCGCGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTT GCCCAAGGACATGGTGTCNG TAGATCCTGAGAGGAAAAGTC ACTCTG AGTGGACACCCATGG GGGTGACTCGCAGGGCATGGCGATAGACAACNGCACGA CACTTGTGGAGAGAGGGAATATG CAAC AGG AG TTG CACGAAAAGAT TNNT ATGTA TA TATTT ACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGAGGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGCCACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAATCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAAAACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGGGGGTAAATATAAAA]
[+] EMBL AW155311 [CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGGCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGCACCAGCGCCACGCAGCTGGGGAGCTCCCTGGGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCTCGGACGGGTGGTATCGCTGGGCCAAACAAGGGGTGGTTTTGGCCCAAGGCCTGGGGGTCGGGAGAGATCCTGAGAGGAAAAGTCAACTCTGCAGGGGACA CCATGGCGGGTGACTCGCAAGGCATGGCGATAGACAAGCGCACGACCACTGCTGGAGAGAGGGAATATGCCAACAAGGAAGTTTGCCAAGAGGAGGTATANTCGGGTAGTATTATTTAACGCCGGgct ]
consensusID : consensus_5488#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 796 fasta sequence
[GCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGAACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGGGGTGACCACCCACAATCCGACGGGGGTATTGTGGGCAGATCAAGGTGTTTTGCCAAGACATGGTGCNGTGGATCTAGAAGAAAGAACTCTGCGTGACACATGGGGGGATCCCGGCATGCGATAACAACCCCACCACTCTGGAGAGGAGATCCCAAGAGTGCCCAAAAAGTTTTTTTTATATTACCCGGTCCGGCCGCATACCGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATCCATTAGATTAACCCCCCCGCGTTAACAGGAGAAAACGGCCAAATGGCACCCCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGGCCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTGTATTTTTTATAA]
[+] EMBL AW155462 [GCTAAAGTCAGAAACTACCGCCAGTGCATCAAACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAACACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAACCCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGCCTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGAACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCGGCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGGGGTGACCACCCACAATCCGACGGGGGTATTGTGGGCAGATCAAGGTGTTTTGCCAAGACATGGTGCNGTGGATCTAGAAGAAAGAACTCTGCGTGACACATGGGGGGATCCCGGCATGCGATAACAACCCCACCACTCTGGAGAGGAGATCCCAAGAGTGCCCAAAAAGTTTTTTTTATATTACCCGGTCCGGCCGCATACCGCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATCCATTAGATTAACCCCCCCGCGTTAACAGGAGAAAACGGCCAAATGGCACCCCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGGCCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTGTATTTTTTATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5488#0 CAGATCCGGTATAGAATTCCTCGCCTGCTGCTAAAGTCAGAAACTACCGCCAGTGCATCA 60
consensus_5488#1 -----------------------------GCTAAAGTCAGAAACTACCGCCAGTGCATCA 31
*******************************
consensus_5488#0 AACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAAC 120
consensus_5488#1 AACCTCGAACCTCAATCAACCGCCAGCAATAAAACATCCACGCCCAACATGAGCACCAAC 91
************************************************************
consensus_5488#0 ACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAAC 180
consensus_5488#1 ACAGCATCCATCAACGCCGGACAGGGCGCCGGAAACACCTACCAGAACCCCAACATAAAC 151
************************************************************
consensus_5488#0 CCTTCGACTTCGCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGC 240
consensus_5488#1 CCTTCGACTTCTCAAGGCGTCGGCGCCGGCGCCGGGTCCATGAACCTGGGGCAGCAGCGC 211
*********** ************************************************
consensus_5488#0 CTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGC 300
consensus_5488#1 CTCGGCGGCGACAGCACGAACCCCGACGGCGCCTCCCGCGGCACCACGACGCAGAACAGA 271
***********************************************************
consensus_5488#0 ACCAGCGCCACGCAGCTGGGGAGCTCCCTGNGGCAGGAGGCGAGCGGCACCGGTGCTGCG 360
consensus_5488#1 ACCAGCGCCACGCAGCTGGGGAGCTACCTGTGGCAGGAGGCGAGCGGCACCGGTGCTGCG 331
************************* **** *****************************
consensus_5488#0 GCAACCAGCGGCGTCGGGGCAAACAGCTCGACCGTCGGTGGCGGTGACGCCCCGACGTCG 420
consensus_5488#1 GCAACCAACGGCGTCGGTGCAAACAGCTACACCAGCCGTGG-GGTGACCACCCACAATCC 390
******* ********* ********** *** * **** ****** *** **
consensus_5488#0 CGGACGGGTGGTATCGCTGGGCAGATCAAGGGGTGCTTTGCCCAAGGACATGGTGTCNGT 480
consensus_5488#1 --GACGGG-GGTATTG-TGGGCAGATCAAGG--TGTTTTGCC--AAGACATGGTG-CNGT 441
****** ***** * ************** ** ****** * ********* ****
consensus_5488#0 AGATCCTGAGAGGAAAAGTCACTCTGAGTGGACACCCATGGGGGTGACTCGCAGGGCATG 540
consensus_5488#1 GGATCT--AGAAGAAAGA--ACTCTGCGTG---ACACATGGGGGGATCCCG----GCATG 490
**** *** **** ****** *** ** ******** * ** *****
consensus_5488#0 GCGATAGACAACNGCACGACACTTGTGGAGAGAGGGAATATGCAACAGGAGTTGCACGAA 600
consensus_5488#1 -CGATA-ACAACCCCACCACTCT-----GGAGAGGAGATCC----CAAGAGT-GCCCAAA 538
***** ***** *** ** ** ****** ** ** **** ** * **
consensus_5488#0 AAGATTNNTATGTATATATTTACGCCGGCTCGCCGGTCATATACGGCGTACAAACTCCGA 660
consensus_5488#1 AAGTTTTTTTTATAT-----TAC-CCGGT---CCGGCCGCATACCGCGAAAAAA------ 583
*** ** * * *** *** **** **** * **** *** * ***
consensus_5488#0 GGATTCGGCCCTTCTATTTCTAAAAAAAAAAAAAAAAAAAAAAAAAACTTGGGGGCCGGC 720
consensus_5488#1 ----------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGCGCCATC 621
************************* *** *** *
consensus_5488#0 CACTCCCTATAGAGTATACCCGCCCGGCGTTTAAGGAAGGAAACCGGCCATAATCTGAAA 780
consensus_5488#1 CATT--------AGATTAACCCCCCCGCGTTAACAGGAGAAAAC-GGCCAAA---TGGCA 669
** * ** ** ** *** ***** * * ** **** ***** * ** *
consensus_5488#0 TCTTCCTTGTATGAGAGGCAACCTCCTCCATAAAAGAGAATGATTATTGGGGGGGTGGAA 840
consensus_5488#1 CC--CCCTCGGGGAAAAACCCCCCCCCCCCCCAAAAACCCCCGCTCCCGGGGGGGGGG-- 725
* ** * ** * * ** ** ** *** * * ******* **
consensus_5488#0 AACCACAACNTATACATCACCTTCCTCCATTNTTTTTTTCTGTGTGGTCGGAAAAGGGGG 900
consensus_5488#1 -CCCCCCCCCCCTTTTTTTTTTTTNTTTNTGNGNTNNNGNNNNNGGNTNTNTGGGTGNTG 784
** * * * * ** * * * * * * * *
consensus_5488#0 GGGTAAATATAAAA 914
consensus_5488#1 TATTTTTTATAA-- 796
* *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||