These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1206 fasta sequence [ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTCATTCATTTGTT] [+] EMBL AK058331 [ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATC ] [+] EMBL AK060021 [ GCTGAGATCGCGCCACGTATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCCCCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGGCGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTACCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTCCGTCGACATACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACGAGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCTCTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATGTGAAGACCGCAGTTGATTTGTTTCACCAAAGGTTTGGTATGATGTTTTCTCCAGCCTTAAGTAGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCCACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTCATTCATTTGTT] consensusID : consensus_5493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 823 fasta sequence [TCCACTGNGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTGCTTTGTCCCATGGTTTTAATTTCAGTCTGCAGTTGAGCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCTTAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCACAATTCACAGTTTTCTGAACTCAGAAAGATGCTTCAGTAGCTTATGGACGCTAATATGTTGTTTCTGAAATAGTTTTCACTGAAAACATGTGCAGATCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAAGGGTGGGT] [-] EMBL CB617775 [TCCACTGNGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTGCTTTGTCCCATGGTTTTAATTTCAGTCTGCAGTTGAGCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCTTAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCACAATTCACAGTTTTCTGAACTCAGAAAGATGCTTCAGTAGCTTATGGACGCTAATATGTTGTTTCTGAAATAGTTTTCACTGAAAACATGTGCAGATCGTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGTCCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAAGTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATCTGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATACTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTATGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATCGTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCACTATACCTGTTAGTATTCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCAGAATTTGCCGTAAGGGTGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5493#0 ACACACACGGGCCACACACACCGCGGAGGAATCCAATCCAGCGGCTGAGATCGCGCCACG 60 consensus_5493#1 ------------------------------------------------------------ consensus_5493#0 TATGTTCCCCCGCTTGCTCCTCGCCCACCGCCTCCTCGCCGGCGCCGCCGCTCCTCTCCC 120 consensus_5493#1 ------------------------------------------------------------ consensus_5493#0 CCGCCGCCGGACGGCCGCCGCCATGTCCGCCGCGGCGCCGGGGACGCGGCTGCTGCGCGG 180 consensus_5493#1 ------------------------------------------------------------ consensus_5493#0 CGTGGTGTTCGACATGGACGGGACCCTGACGGTGCCCGTCATCGACTTCCCGGCCATGTA 240 consensus_5493#1 ------------------------------------------------------------ consensus_5493#0 CCGCGAGGTGCTCGGCGGGGACGAGGCCTACGCGGCGGCGCGCGCGGCGGGCGGGGGCTC 300 consensus_5493#1 ----------------------------------------------------------TC 2 ** consensus_5493#0 CGTCGACA-TACTCCACTGCATCGAGGGCTGGGCGCCCGACGAGCAGCGCCGCGCCTACG 359 consensus_5493#1 CACTGNGAATATTCCACCAAAT---GAGGTGGTC-----ATGGTTGGTGATA-GCCTCAA 53 * * * ** ***** ** * * *** * * * * * **** consensus_5493#0 AGGTCATCGCGCGGTTCGAGCAGGATGGCCTCGACCGCCTCCAGATCATGCCCGGTGCCT 419 consensus_5493#1 GGATGATGTAAGAATTCTTTATAAATTGTTTCTAAATAGTTTG--CTTTGTCCCATGGTT 111 * * ** *** ** * ** * * ** ** ** * consensus_5493#0 CTGAGCTCTGCGGGTTCCTGGACGCAAAGCAGATCAGAAGAGGTTTAATCACCCGCAATG 479 consensus_5493#1 TTAATTTCAGTCTGCAGTTGA--GCTAAATTGTTCTAGTGTTGTTTTTTTATATGCCCCT 169 * * ** * * ** ** ** * ** * **** * * ** consensus_5493#0 TGAAGACCGCAGTTG-ATTTGTTTCACCA--AAGGTTTGGTATGATGTTTTCTCCAGCCT 536 consensus_5493#1 TAACTGTAATACTTGCATAAGCTAAGTTACTAGGGTATTGGACAATGCCCTTTTAGCTCA 229 * * * *** ** * * * * *** * * * *** * * * consensus_5493#0 TAAGT-AGAGAATTCCGCCCCTATAAGCCAGATCCAGCTCCCCTGCTTCATATTTGCTCC 595 consensus_5493#1 CAATTCACAGTTTTCTGAACTCAGAA---AGAT---GCTTCAGTAGCTTATGGACGCT-- 281 ** * * ** *** * * * ** **** *** * * * ** *** consensus_5493#0 ACTTGGAATATTCCACCAAATGAGGTGGTCATGGTTGGTGATAGCCTCAAGGATGATGTC 655 consensus_5493#1 ------AATATGTTGTTTC-TGAAATAGTTTTCACTGAAAACATGTGCAGA-------TC 327 ***** *** * ** * ** * * ** ** consensus_5493#0 GTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGT 715 consensus_5493#1 GTCTGTGGTAAGAGAGCAGGAGCTTTTACTTGCTTGCTTGACGAAACAGGACGATACGGT 387 ************************************************************ consensus_5493#0 CCCCATGATTCTTTGCCTGAAGGTGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAA 775 consensus_5493#1 CCCCATGATTCTTTGCCTGAAGATGTTCGACCTGACTTCAAGGTTTCTTCGCTTTCCGAA 447 ********************** ************************************* consensus_5493#0 GTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATC 835 consensus_5493#1 GTATTCTCTGTGCTGGAAGAGCATTTTGATTTGGCACCGGTGGTTTCAGAGAGTAGAATC 507 ************************************************************ consensus_5493#0 TGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATA 895 consensus_5493#1 TGACAGGAAAGTATTAGTTATCTGTGATCTAACATGGAACCCAGCTCCTGTGTCTTAATA 567 ************************************************************ consensus_5493#0 CTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTA 955 consensus_5493#1 CTATGAACCTCCATCAGTGGTGTTTCAAGTACCAGAAACCCTTACGGCCTATGAAGATTA 627 ************************************************************ consensus_5493#0 TGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATC 1015 consensus_5493#1 TGCTCTCCACCAAAGTGGATTGCAGTTTGATTTTGCCACTTGCCCTCAAAATGATTCATC 687 ************************************************************ consensus_5493#0 GTTCATTGTCAGCCGGTTTGATGTATATCACTATGTCCTGTCCACTATACCTGTTAGTAT 1075 consensus_5493#1 GTTCATTGTCAGCCGGTTTGATGTATATCACTATG-----TCCACTATACCTGTTAGTAT 742 *********************************** ******************** consensus_5493#0 TCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCA 1135 consensus_5493#1 TCTGTGGCACGGACAGTGCGTTCTGTTATAGACAAAAATCAACCCTCGCGATGACTGGCA 802 ************************************************************ consensus_5493#0 GAATTTGCCGTAGTATTTGGGTGATTCAGAATCTTTTATCTGTGGCCATCTTTCATATTC 1195 consensus_5493#1 GAATTTGCCGTAA-GGGTGGGT-------------------------------------- 823 ************ ***** consensus_5493#0 ATTCATTTGTT 1206 consensus_5493#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||