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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence
[TAGAAACTCTCGCTCTCTTCTCTCCCTGGCGCACTATCGCTGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAATTTTAACTATCCCTCGCCTCTCCAATAGCCGCTACTGTCGTGGAGATGGTCGGTGCCAAGCACTGCGCTTCTTCGGCGGCCCTGTTCTATCCCCATGAGTGTGCTCTCGGGTCTCTACTTCTTCCTCTCCCCCTCTAATTTCTAGTGTTTATATTGTGATTGAAAAATGTGTGGTTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGCAACTCTGCTAGAACACCACTTGCTCCTTCTTCAGGTTGGTCTCTCTGCTGTCTCACTTCAGCATCTTCTTGCTGCTNTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATCTGGATTTGGTACTTCCCCTGCTTTTCCTGGTGTTGATCCTCTTGCTTGAATGCTGCTCCTTTTTGCTTTTCCTAATACTCCTTTGACCTTTCATTCACTCACTTTAGCCTTTTCTGGGTGCACACACAAGGCTGCTACGGCTGTGGTTAAGCATGGTTTAGATGTTGAACTACTGATTTACTAGCTGTGATTATTTTTTTTTTTCCCAATTTCCCCTGATTTCCAGCCGAGGCTGCTTGCTGTTGCTGGGATTTTACTACTACTATGGCTGCTGTACTACTGGGAGTTGCTAGCTGTAGCTAGGTGTTTATCGTTGCAACCAAGGCTGGCTTTACCAGACTGTGGATAATTCCCATTGTTATGCTTTATCTCAGTGCATTTGGTGCTGGGGAAAAAAAAAAAAAAAAA]
[+] EMBL CF295461 [TAGAAACTCTCGCTCTCTTCTCTCCCTGGCGCACTATCGCTGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAATTTTAACTATCCCTCGCCTCTCCAATAGCCGCTACTGTCGTGGAGATGGTCGGTGCCAAGCACTGCGCTTCTTCGGCGGCCCTGTTCTATCCCCATGAGTGTGCTCTCGGGTCTCTACTTCTTCCTCTCCCCCTCTAATTTCTAGTGTTTATATTGTGATTGAAAAATGTGTGGTTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGCAACTCTGCTAGAACACCACTTGCTCCTTCTTCAGGTTGGTCTCTCTGCTGTCTCACTTCAGCATCTTCTTGCTGCTNTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATCT ]
[-] EMBL CF295460 [ ttTTGCTGCTTTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATTTGGATTTGGTACTTCCCCTGCTTTTCCTGGTGTTGATCCTCTTGCTTGAATGCTGCTCCTTTTTGCTTTTCCTAATACTCCTTTGACCTTTCATTCACTCACTTTAGCCTTTTCTGGGTGCACACACAAGGCTGCTACGGCTGTGGTTAAGCATGGTTTAGATGTTGAACTACTGATTTACTAGCTGTGATTATTTTTTTTTTTCCCAATTTCCCCTGATTTCCAGCCGAGGCTGCTTGCTGTTGCTGGGATTTTACTACTACTATGGCTGCTGTACTACTGGGAGTTGCTAGCTGTAGCTAGGTGTTTATCGTTGCAACCAAGGCTGGCTTTACCAGACTGTGGATAATTCCCATTGTTATGCTTTATCTCAGTGCATTTGGTGCTGGGGAAAAAAAAAAAAAAAAA]
consensusID : consensus_5495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence
[TGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAACCCTAACTATCCCTCGCCTCTCCAATAGCCGCTGCTGCNGTGGAGATGGCCGGTGCCAAGCACTGCGCAANTCCGGCGGCCCTGTTCTATCCCCATGAGTGTGCNCTCGGTGATTGAAAAATGTGTGGNTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTAGAACACCACTTGCTCCTTCTTCANGTTGGGTCTCTCTGCTGGTCTCACTTCAGCAAT]
[+] EMBL AU032112 [TGCGCTCCCAGGGCGCATCGCCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAACCCTAACTATCCCTCGCCTCTCCAATAGCCGCTGCTGCNGTGGAGATGGCCGGTGCCAAGCACTGCGCAANTCCGGCGGCCCTGTTCTATCCCCATGAGTGTGCNCTCGGTGATTGAAAAATGTGTGGNTCAGCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTAGAACACCACTTGCTCCTTCTTCANGTTGGGTCTCTCTGCTGGTCTCACTTCAGCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5495#0 TAGAAACTCTCGCTCTCTTCTCTCCCTGGCGCACTATCGCTGCGCTCCCAGGGCGCATCG 60
consensus_5495#1 ----------------------------------------TGCGCTCCCAGGGCGCATCG 20
********************
consensus_5495#0 CCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAATTTTAA 120
consensus_5495#1 CCGCCGCTTCCTCCTCTCCCCCCCTTCCTTCCTTCCTCTCTTTCCCTGTTCAAACCCTAA 80
****************************************************** ***
consensus_5495#0 CTATCCCTCGCCTCTCCAATAGCCGCTACTGTCGTGGAGATGGTCGGTGCCAAGCACTGC 180
consensus_5495#1 CTATCCCTCGCCTCTCCAATAGCCGCTGCTGCNGTGGAGATGGCCGGTGCCAAGCACTGC 140
*************************** *** ********** ****************
consensus_5495#0 GCTTCTTCGGCGGCCCTGTTCTATCCCCATGAGTGTGCTCTCGGGTCTCTACTTCTTCCT 240
consensus_5495#1 GCAANTCCGGCGGCCCTGTTCTATCCCCATGAGTGTGCNCTCGG---------------- 184
** * ******************************* *****
consensus_5495#0 CTCCCCCTCTAATTTCTAGTGTTTATATTGTGATTGAAAAATGTGTGGTTCAGCCCCTCC 300
consensus_5495#1 ------------------------------TGATTGAAAAATGTGTGGNTCAGCCCCTCC 214
****************** ***********
consensus_5495#0 TTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGCAACTCTGCTA 360
consensus_5495#1 TTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTA 274
************************************************* **********
consensus_5495#0 GAACACCACTTGCTCCTTCTTCAGGTTGG-TCTCTCTGCTG-TCTCACTTCAGCATCTTC 418
consensus_5495#1 GAACACCACTTGCTCCTTCTTCANGTTGGGTCTCTCTGCTGGTCTCACTTCAGCAAT--- 331
*********************** ***** *********** *************
consensus_5495#0 TTGCTGCTNTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATATCTGGATTTGGT 478
consensus_5495#1 ------------------------------------------------------------
consensus_5495#0 ACTTCCCCTGCTTTTCCTGGTGTTGATCCTCTTGCTTGAATGCTGCTCCTTTTTGCTTTT 538
consensus_5495#1 ------------------------------------------------------------
consensus_5495#0 CCTAATACTCCTTTGACCTTTCATTCACTCACTTTAGCCTTTTCTGGGTGCACACACAAG 598
consensus_5495#1 ------------------------------------------------------------
consensus_5495#0 GCTGCTACGGCTGTGGTTAAGCATGGTTTAGATGTTGAACTACTGATTTACTAGCTGTGA 658
consensus_5495#1 ------------------------------------------------------------
consensus_5495#0 TTATTTTTTTTTTTCCCAATTTCCCCTGATTTCCAGCCGAGGCTGCTTGCTGTTGCTGGG 718
consensus_5495#1 ------------------------------------------------------------
consensus_5495#0 ATTTTACTACTACTATGGCTGCTGTACTACTGGGAGTTGCTAGCTGTAGCTAGGTGTTTA 778
consensus_5495#1 ------------------------------------------------------------
consensus_5495#0 TCGTTGCAACCAAGGCTGGCTTTACCAGACTGTGGATAATTCCCATTGTTATGCTTTATC 838
consensus_5495#1 ------------------------------------------------------------
consensus_5495#0 TCAGTGCATTTGGTGCTGGGGAAAAAAAAAAAAAAAAA 876
consensus_5495#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||