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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5500#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence
[TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGAGCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCGGCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAAAACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA]
[+] EMBL AK109317 [TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGAGCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCGGCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAAAACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGA ]
[+] EMBL AU066076 [ ACCCTACTGGTTNCAAGACCAAAAAAAGGAATGGACTCCNGCACTATCTCTAGTTCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTGTTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTCTACGTTCTTGGTTCGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAGCTACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTCCAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGATGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGAATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAGTTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAGCAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAATTGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA]
consensusID : consensus_5500#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[CGAGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGGCTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTATACCTCTCTTTGATTCTGCAACTCTGAATCTGAAACGCATTGTGTTCTGACATTGCAGGTTTCTTTTTTTTTTTTTCTCTTTGGCCTCTGGGGCTCTTTCATGATTCCAAAAGTGCAATGTTGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGGAAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTCTGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAACCACATGGGACTAAACTACACTATTACTGCAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTACTGGTTTCAAGAACCAAAAAANGGAATGGACTCCGNACTATCTCTAGTTCTTTACCACATGTCATGGGAGGAATAACTTAATGGAACAACCGCACTGN]
[+] EMBL AU090581 [CGAGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAACTTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGGCTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTATACCTCTCTTTGATTCTGCAACTCTGAATCTGAAACGCATTGTGTTCTGACATTGCAGGTTTCTTTTTTTTTTTTTCTCTTTGGCCTCTGGGGCTCTTTCATGATTCCAAAAGTGCAATGTTGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGGAAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTCTGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAACCACATGGGACTAAACTACACTATTACTGCAGTCTATATAGGTTTCAAATGGAGTGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTGCGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTACTGGTTTCAAGAACCAAAAAANGGAATGGACTCCGNACTATCTCTAGTTCTTTACCACATGTCATGGGAGGAATAACTTAATGGAACAACCGCACTGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5500#0 TGTCAGCCAGAGCTGCAGATCAAACTGGGGCACGGGCGCTCCCCACGCGCGCAGAACAGA 60
consensus_5500#1 ------------------------------------------------------------
consensus_5500#0 GCACCACGAAGCTCCAAACACATTCCTCCATCATCTCATCTTTTGACCGGTCACCGGCCG 120
consensus_5500#1 ------------------------------------------------------------
consensus_5500#0 GCCGGGGACCTACGCGGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAAC 180
consensus_5500#1 ------------CG-AGCGGCCACCACCACCACCACCGGCAGCGCCATGACAGCCTGAAC 47
** ********************************************
consensus_5500#0 TTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGTCTATA 240
consensus_5500#1 TTGTGTTTAAGTAAGCCCCAAAGCGTAGCAAAGTATTGCAGGACCAACGAAAAGGTGAGG 107
****************************************************** *
consensus_5500#0 TAG-GTTTCAAATGGAG-TGCGGTGTTACACTTCCAATCCTCTATGGCCACGTAGCCTTG 298
consensus_5500#1 CTGTGCTTTGATTTGATCTTCTTTTTTGTGTGCATGACCACCTACTAT-ACCTCTCTTTG 166
* * ** * * ** * * * ** * * *** ** * * ***
consensus_5500#0 CGGCCAGGGTTACCGATTTCGAGGTAAAAACCGGTTCCTGTTGGCCGCAAGGCTACACAA 358
consensus_5500#1 ATTCTGCAACT-CTGAATCTGAAACGCA--TTGTGTTCTGACA-TTGCAGGTTTCTTTTT 222
* * * ** * ** * * * *** *** * *
consensus_5500#0 AACCGGACCCTACTGGTTTCAAGAACAAAAAAAGGAATGGACTCCCGCACTATCTCTAGT 418
consensus_5500#1 TTTTTTTTCTCTTTGGCCTCTGG----------------GGCTCTTTCATGATTCCAAAA 266
* *** ** * * *** ** ** * *
consensus_5500#0 TCTTTACACATGTCATGGAGGAATAACTCAGTGAAACAACGCACTGTCTGGTGCTGTTTG 478
consensus_5500#1 GTGCAATGT-TGCATCACTGGAGTGAACTGATTGTTTGCTTTGCTGAATTGTATTATTGG 325
* ** *** * * * *** * ** * ** *
consensus_5500#0 TTAAAAAAAAAAAGAAAGAAAAAACTTAGAGTGACTGACCAAGAAATCCATGATCTGGTC 538
consensus_5500#1 AAGAGTTAAAATCTTCCTTAGTTACTACCAACATCCCACCAAAGAAAGAGCTATCTAGTC 385
* **** * *** * * ***** ** **** ***
consensus_5500#0 TACGTTCTTGGTT---CGTCTACCGATTCATCAAGAAGAGATTCCACACCGGCCTAG-CT 594
consensus_5500#1 TGTTCTACACGTTAAGTACCCACTATTACGTCACTTCGAAA--CCACATGGGACTAAACT 443
* * *** * ** * * *** ** * ***** ** *** **
consensus_5500#0 ACGGTGTCCCGTGATGTCGGCTGTCGGCAAGATCAACATGTATGTTTCGTTCAGCTCCTC 654
consensus_5500#1 ACACTAT----TACTGCAGTCTAT--ATAGGTTTCAAATGGA-GTGCGGTGTTACACTTC 496
** * * * ** * ** * * * * * *** * ** ** * * **
consensus_5500#0 CAGTGAAATGGCCCCGGACAGCTATATAGCCTGAATCCCAATCAGAGATGCAGTCATGGA 714
consensus_5500#1 CAAT--------CCTCTATGGCCACGTAGCCT----TGCGGCCAGGGTTACCGATTTCGA 544
** * ** * ** * ****** * *** * * * * * **
consensus_5500#0 --TGATAACCATGCGTCGTATGCTTCAGTAATTCAGTTTAGTAGGCTCATGTGCCTCTGA 772
consensus_5500#1 GGTAAAAACCGGTTNCTGTTGGCCGCAAGGCTTCACAAAACCGGACCCCTA-----CTGG 599
* * **** ** ** ** **** * * * * * ***
consensus_5500#0 ATCTCTGATTGGGAAGTTGCAGTAGGCAGACATTCCAGTTTGGATGCCATGATCAGTTAG 832
consensus_5500#1 TTTCAAGAACCAAAAAANGGAATGG------ACTCCGNACTATCTCTAGTTCTTTACCAC 653
* ** ** * * * * * *** * * * * *
consensus_5500#0 TTATCAATGCCGATCCTGTGCTGATGCAGTTGTTGGGTTGGGTCTGATTAGTGTGACGAG 892
consensus_5500#1 ATGTCA-TGGGAGGAATAACTTAATGGAACAACCGCACTGN------------------- 693
* *** ** * * *** * * **
consensus_5500#0 CAGGAAGAGACATTTGCCAGTTTTTCTGGATCTGCTACATCATTCAGAGGCTTTGCTAAT 952
consensus_5500#1 ------------------------------------------------------------
consensus_5500#0 TGATGCTGTATTTCTGTCTCCAAAAAAAAAAAAAAGTAAGTGAAATCTTTGAGAAAAA 1010
consensus_5500#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||