These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG] [+] EMBL CB630751 [CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG] consensusID : consensus_551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence [TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC] [-] EMBL BI799967 [TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_551#0 -CTTTTTTTTTTT-----AATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTA 54 consensus_551#1 TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTA 60 ***** * * ** ****** ******************************** consensus_551#0 ATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCT 114 consensus_551#1 ATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCT 120 ************************ *********************************** consensus_551#0 TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATT 174 consensus_551#1 TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC----------------- 163 ************************************** **** consensus_551#0 CAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTT 234 consensus_551#1 ------------------------------------------------------------ consensus_551#0 GCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTT 294 consensus_551#1 ------------------------------------------------------------ consensus_551#0 CTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGC 354 consensus_551#1 ------------------------------------------------------------ consensus_551#0 ACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGA 414 consensus_551#1 ------------------------------------------------------------ consensus_551#0 GTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGT 474 consensus_551#1 ------------------------------------------------------------ consensus_551#0 GGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTG 534 consensus_551#1 ------------------------------------------------------------ consensus_551#0 TAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTC 594 consensus_551#1 ------------------------------------------------------------ consensus_551#0 TCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATT 654 consensus_551#1 ------------------------------------------------------------ consensus_551#0 GTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTAT 714 consensus_551#1 ------------------------------------------------------------ consensus_551#0 TGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG 754 consensus_551#1 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||