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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 551 cluster # 551       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_551#0 length = 754 sequences # 1  
consensus_551#1 length = 163 sequences # 1  

consensusID : consensus_551#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence
                              [CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG]

[+] EMBL CB630751             [CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG]


>consensus_551#0 CTTTTTTTTTTTAATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAAC AAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACC TTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATTCAGCTC ATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTTGCCTTG GGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTTCTCCTC TTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGCACAACT GTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGAGTTCGC CCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGTGGGCCC CACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTGTAGCTC AAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTCTCTACC AACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATTGTTAGA AATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTATTGACGG CGTTAATTTGGCACTTAACAGTCGTCAACACCGG



consensusID : consensus_551#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence
                              [TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC]

[-] EMBL BI799967             [TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTAATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCTTCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC]


>consensus_551#1 TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTA ATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCT TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_551#0      -CTTTTTTTTTTT-----AATCTTAATCACTCAGAATGATATTTCTATTAAAGCAGAGTA 54
consensus_551#1      TTTTTTTCTCACTGAGCAAACCTTAATTACTCAGAATGATATTTCTATTAAAGCAGAGTA 60
                       ***** *   *     ** ****** ********************************

consensus_551#0      ATTAACAAGATACAAAAGTAGGAGGAGATTACCGACAACTCCGGGATTCCTCCGATTCCT 114
consensus_551#1      ATTAACAAGATACAAAAGTAGGAGAAGATTACCGACAACTCCGGGATTCCTCCGATTCCT 120
                     ************************ ***********************************

consensus_551#0      TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGGACACTAGAGCCTGTTGTAATT 174
consensus_551#1      TCTACCTTACTCTCTCCCTATTCTAATATACAATAAAGTACAC----------------- 163
                     ************************************** ****                 

consensus_551#0      CAGCTCATGCTTTGGTGTGTGAATGAGGGAGAGGAGAGGGGTATTTATAGGTGGAGAGTT 234
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GCCTTGGGAGAGTGGAGATGGTAGGAATATTCTCCATAGAATCCAAAGAGCATCTTCCTT 294
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      CTCCTCTTGATGACGGTTTCTACCAGTATTAACGCTCGTAACCGTCATAAGATGAGGAGC 354
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      ACAACTGTCATACCGAAGTTGGGCTGGATTGGGCCAGCTGGGGTTCGGCCGAACCAGGGA 414
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GTTCGCCCAAACCCTGGTTGGCTCCCCTGGCCCACATCCTTCTTCAGGATGCTGACATGT 474
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GGGCCCCACTTCATGATACTACATGTTTTGGCTCCAAATGATTGCACATTTTATATGTTG 534
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      TAGCTCAAAACCATGTGAGTTCATCAGCGCAGAATATATTTTCATTCTTTATGCTCATTC 594
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      TCTACCAACTTTGGTGGTTGATCACCTGCATACAAATATACACCAACACTCGTGGAAATT 654
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      GTTAGAAATAAATCCTACCACTATGTTGGATGTTTCACATTTATGGCTTTATGCAGGTAT 714
consensus_551#1      ------------------------------------------------------------
                                                                                 

consensus_551#0      TGACGGCGTTAATTTGGCACTTAACAGTCGTCAACACCGG 754
consensus_551#1      ----------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)