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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5511#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 893 fasta sequence
[AATAGCCACTCTTTAGACTCCCACTTCCAAACTACTTAATATCTCATTCCTTGTCTTTTCCCGAGACCCGTCTCAACCCAACCTAATTCAAGATGTTCTCCCTCAAGACCGTTGTCCTGGCCCTTGCCGCCGCCGCCTTCGTCCAGGCCATCCCCGCCCCTGGTGAGGGTCCTTCCGTCTCCATGGCTCAACAGAAGTGCGGTGCCGAGAAGGTCGTCTCTTGCTGCAACAGCAAGGAGCTTAAGAACTCCAAGTCTGGTGCCGAGATCCCCATCGACGTTCTCAGCGGCGAGTGCAAGAACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCNCATCAACAACTTCTGCTCGGACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTCACATCCAGTGCACTCCTATCCTGAGCTAAATGGCTTAATGTCTNTACCGACATCTAGCNTATTTCTCACATCAGGGATGCATGCGATCACGAGGGGATGATGGTGTGGANGGACGTTGGAGTTCTGTGNGGGAAGCCGAGTCCGCATCAGCGTGAGTGAAAGCCGTCCTGCTTGTGGGGCCTGTTTCGTCTAACACCTGCGGCGTGAATGCTAGCCACAATCAGCGATCTGCTCGCTGAGGATGATGCAAGTTTGAACTCTGANGGACCCGTTAGAGCTCTTCGTCCTCTTATAACCCTCGACTAAAAAAAAAAAAAAATAGGGGGCGGCCATCCCTAGATATACCCTCTGCGGTTAATGGATGAACTGGTCATATCTTGCTCCTTCCTGTATAACCCCCCCTCCCCCCATGAGGACCTCCCTACGGGGGGTGGACCACCACCCTCTTTCTTCCTCTCGCGGTGGCAGAGGGGGGCGGTAACATTAAAAAAT]
[+] EMBL AW155426 [AATAGCCACTCTTTAGACTCCCACTTCCAAACTACTTAATATCTCATTCCTTGTCTTTTCCCGAGACCCGTCTCAACCCAACCTAATTCAAGATGTTCTCCCTCAAGACCGTTGTCCTGGCCCTTGCCGCCGCCGCCTTCGTCCAGGCCATCCCCGCCCCTGGTGAGGGTCCTTCCGTCTCCATGGCTCAACAGAAGTGCGGTGCCGAGAAGGTCGTCTCTTGCTGCAACAGCAAGGAGCTTAAGAACTCCAAGTCTGGTGCCGAGATCCCCATCGACGTTCTCAGCGGCGAGTGCAAGAACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCNCATCAACAACTTCTGCTCGGACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTCACATCCAGTGCACTCCTATCCTGAGCTAAATGGCTTAATGTCTNTACCGACATCTAGCNTATTTCTCACATCAGGGATGCATGCGATCACGAGGGGATGATGGTGTGGANGGACGTTGGAGTTCTGTGNGGGAAGCCGAGTCCGCATCAGCGTGAGTGAAAGCCGTCCTGCTTGTGGGGCCTGTTTCGTCTAACACCTGCGGCGTGAATGCTAGCCACAATCAGCGATCTGCTCGCTGAGGATGATGCAAGTTTGAACTCTGANGGACCCGTTAGAGCTCTTCGTCCTCTTATAACCCTCGACTAAAAAAAAAAAAAAATAGGGGGCGGCCATCCCTAGATATACCCTCTGCGGTTAATGGATGAACTGGTCATATCTTGCTCCTTCCTGTATAACCCCCCCTCCCCCCATGAGGACCTCCCTACGGGGGGTGGACCACCACCCTCTTTCTTCCTCTCGCGGTGGCAGAGGGGGGCGGTAACATTAAAAAAT]
consensusID : consensus_5511#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 854 fasta sequence
[CTCTNTAGACTCCCACTTCCAAACTACTTAATATCTCATTCCTTGTCTTTTCCCGAGACCCCTCTCAACCCAACCTAATTCAAGATGTTCTCCCTCAAGACCGTTGTCCTGGCCCTTGCCGCCGCCGCCTTCGTCCAGGCCATCCNCGCCCCTGGTGAGGGTCCTTCCGTCTCCATGGCTCANCAGAAGTGCGGTGCCGAGAAGGTCGTCTCTTGCTGCAACAGCAAGGAGCTTAAGAACTCCAAGTCTGGTGCCGAGATCCCCATCGACGTTCTCAGCGGCGAGTGCAAGAACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCTCATCAACAACTTCTGCTCGGACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTAACATCCAGTGCACTCCTATCCTGAGCTAAATGGGCTAATGTCGTACCGACATCTAGCTATTTTCTCACATCAGGGATGCAATCGATCACNAGGGGATGAATGTGGTGGAGACGTTTGAGTTCTGTATGGAAGCGAGTCCGCAACACCTTGATGAAACCGCCTGCTGGTGGGGCCTGTTGTCTACAACCGCGCGGGATGGTAGCACAACCGCGATCGTTGCCTGGGATGTGAGTTTGACGCTGAAGACGCGCAAAATTTTTTCCTTTATTACCTCAAAAAAAAAAAAAAAAAATTGATTATTTTAAGGGCGCCAATCCTTTATTTCCCCCCGGCGTACAGGAGGAACGTACTATCTGCACCTTCCTTTTAGGAAGAAGCACGCCCCCTCCCTCGGTANNANAGNGGGGGGGGAGGGGGGGGGTGGGTGGAAGAANACCACCCTTTTCCCCGTAGACAGGGGA]
[+] EMBL AW155455 [CTCTNTAGACTCCCACTTCCAAACTACTTAATATCTCATTCCTTGTCTTTTCCCGAGACCCCTCTCAACCCAACCTAATTCAAGATGTTCTCCCTCAAGACCGTTGTCCTGGCCCTTGCCGCCGCCGCCTTCGTCCAGGCCATCCNCGCCCCTGGTGAGGGTCCTTCCGTCTCCATGGCTCANCAGAAGTGCGGTGCCGAGAAGGTCGTCTCTTGCTGCAACAGCAAGGAGCTTAAGAACTCCAAGTCTGGTGCCGAGATCCCCATCGACGTTCTCAGCGGCGAGTGCAAGAACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCTCATCAACAACTTCTGCTCGGACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTAACATCCAGTGCACTCCTATCCTGAGCTAAATGGGCTAATGTCGTACCGACATCTAGCTATTTTCTCACATCAGGGATGCAATCGATCACNAGGGGATGAATGTGGTGGAGACGTTTGAGTTCTGTATGGAAGCGAGTCCGCAACACCTTGATGAAACCGCCTGCTGGTGGGGCCTGTTGTCTACAACCGCGCGGGATGGTAGCACAACCGCGATCGTTGCCTGGGATGTGAGTTTGACGCTGAAGACGCGCAAAATTTTTTCCTTTATTACCTCAAAAAAAAAAAAAAAAAATTGATTATTTTAAGGGCGCCAATCCTTTATTTCCCCCCGGCGTACAGGAGGAACGTACTATCTGCACCTTCCTTTTAGGAAGAAGCACGCCCCCTCCCTCGGTANNANAGNGGGGGGGGAGGGGGGGGGTGGGTGGAAGAANACCACCCTTTTCCCCGTAGACAGGGGA]
consensusID : consensus_5511#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[TGGNTCAGCAAAAAGGCGGTNCCGANAAGGTCGTCTNTTGNTGCNNCAGCAAGGAGNTTAAGAACTCCAAGTNTGGNGCCNAGATCCCCATNGACGTTNTCAGCGGCGAGNCAAGAACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCCCATCAACAACTTCTGCTCGGACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTCAACATCCAGTGCACTCCTATCCTGAGCTAAATGGCTTAATGTCTTTACCGACATCTAGCTATTTTCTCACATCAGGGATGCATGCGATCACGAGGGGATGATGGTGGTGGAGGACGTTTGGAGTTTCTGTGAGGGAGCCGGAGTCCGGCGATCAGCGTTGAGTGAAAGCCGGTCCTGGCTGCTGGGGGCCCTGGTTTCGTCCTAAGCACCTGGCGGCCGTGGAATGGCTAGGCACACAATCCGCCGGATCCTGTCTCGCCTGAGGGATTGATGTCAAGTTTTGGAAGCATCTGGAAGGATGCCCGCTAGAGAAGTCTCTTCTCGTTCCACTCATTTAATAAAACCCCTTCCAGCCCTAAAAAAAAAAAAA]
[+] EMBL AT003367 [TGGNTCAGCAAAAAGGCGGTNCCGANAAGGTCGTCTNTTGNTGCNNCAGCAAGGAGNTTAAGAACTCCAAGTNTGGNGCCNAGATCCCCATNGACGTTNTCAGCGGCGAGNCAAGAACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCCCATCAACAACTTCTGCTCGGACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTCAACATCCAGTGCACTCCTATCCTGAGCTAAATGGCTTAATGTCTTTACCGACATCTAGCTATTTTCTCACATCAGGGATGCATGCGATCACGAGGGGATGATGGTGGTGGAGGACGTTTGGAGTTTCTGTGAGGGAGCCGGAGTCCGGCGATCAGCGTTGAGTGAAAGCCGGTCCTGGCTGCTGGGGGCCCTGGTTTCGTCCTAAGCACCTGGCGGCCGTGGAATGGCTAGGCACACAATCCGCCGGATCCTGTCTCGCCTGAGGGATTGATGTCAAGTTTTGGAAGCATCTGGAAGGATGCCCGCTAGAGAAGTCTCTTCTCGTTCCACTCATTTAATAAAACCCCTTCCAGCCCTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5511#0 AATAGCCACTCTTTAGACTCCCACTTCCAAACTACTTAATATCTCATTCCTTGTCTTTTC 60
consensus_5511#2 ------------------------------------------------------------
consensus_5511#1 --------CTCTNTAGACTCCCACTTCCAAACTACTTAATATCTCATTCCTTGTCTTTTC 52
consensus_5511#0 CCGAGACCCGTCTCAACCCAACCTAATTCAAGATGTTCTCCCTCAAGACCGTTGTCCTGG 120
consensus_5511#2 ------------------------------------------------------------
consensus_5511#1 CCGAGACCCCTCTCAACCCAACCTAATTCAAGATGTTCTCCCTCAAGACCGTTGTCCTGG 112
consensus_5511#0 CCCTTGCCGCCGCCGCCTTCGTCCAGGCCATCCCCGCCCCTGGTGAGGGTCCTTCCGTCT 180
consensus_5511#2 ------------------------------------------------------------
consensus_5511#1 CCCTTGCCGCCGCCGCCTTCGTCCAGGCCATCCNCGCCCCTGGTGAGGGTCCTTCCGTCT 172
consensus_5511#0 CCATGGCTCAACAGAAGTGCGGTGCCGAGAAGGTCGTCTCTTGCTGCAACAGCAAGGAGC 240
consensus_5511#2 ---TGGNTCAGCAAAAAGGCGGTNCCGANAAGGTCGTCTNTTGNTGCNNCAGCAAGGAGN 57
consensus_5511#1 CCATGGCTCANCAGAAGTGCGGTGCCGAGAAGGTCGTCTCTTGCTGCAACAGCAAGGAGC 232
*** *** ** ** ***** **** ********** *** *** **********
consensus_5511#0 TTAAGAACTCCAAGTCTGGTGCCGAGATCCCCATCGACGTTCTCAGCGGCGAGTGCAAGA 300
consensus_5511#2 TTAAGAACTCCAAGTNTGGNGCCNAGATCCCCATNGACGTTNTCAGCGGCGAGN-CAAGA 116
consensus_5511#1 TTAAGAACTCCAAGTCTGGTGCCGAGATCCCCATCGACGTTCTCAGCGGCGAGTGCAAGA 292
*************** *** *** ********** ****** *********** *****
consensus_5511#0 ACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCNCATCAACAACTTCTGCTCGG 360
consensus_5511#2 ACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCCCATCAACAACTTCTGCTCGG 176
consensus_5511#1 ACATCCCGATCAACATCCTCACCATCAACCAGCTCATCCTCATCAACAACTTCTGCTCGG 352
*************************************** ********************
consensus_5511#0 ACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTCA-CATCCAGTGCACTCCTA 419
consensus_5511#2 ACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTCAACATCCAGTGCACTCCTA 236
consensus_5511#1 ACACCGTTTCGTGCTGCTCCGGCGAGCAGATTGGTCTGGTAA-CATCCAGTGCACTCCTA 411
**************************************** * *****************
consensus_5511#0 TCCTGAGCTAAATGGCTTAATGTCTNTACCGACATCTAGCNTATTTCTCACATCAGGGAT 479
consensus_5511#2 TCCTGAGCTAAATGGCTTAATGTCTTTACCGACATCTAGCTATTTTCTCACATCAGGGAT 296
consensus_5511#1 TCCTGAGCTAAATGGGCTAATGTC-GTACCGACATCTAGCTATTTTCTCACATCAGGGAT 470
*************** ******* ************** *****************
consensus_5511#0 GCATGCGATCACGAGGGGATGATGGTGTGGANGGACGTT-GGAGTT-CTGTGNGGGAA-- 535
consensus_5511#2 GCATGCGATCACGAGGGGATGATGGTGGTGGAGGACGTTTGGAGTTTCTGTGAGGGAG-- 354
consensus_5511#1 GCAATCGATCACNAGGGGATGAATGTGGTGGAG-ACGTTTGAGTTCTGTATGGAAGCGAG 529
*** ******* ********* *** * * ***** * * * ** *
consensus_5511#0 -GCCGAGTCCGC--ATCAG--CGT-GAGTGAAAGCCG-TCCTGCTTGT--GGGGCCT--G 584
consensus_5511#2 -CCGGAGTCCGGCGATCAG--CGTTGAGTGAAAGCCGGTCCTGGCTGCTGGGGGCCCTGG 411
consensus_5511#1 TCCGCAACACCTTGATGAAACCGCCTGCTGGTGGGGCCTGTTGTCTACAACCGCGCGGGA 589
* * * ** * ** ** * * ** * * *
consensus_5511#0 TTTCGTCT--AACAC--CTGCGGCGTGAATGCTA-GCCACAATCAGCGATCTGCTCGCTG 639
consensus_5511#2 TTTCGTCCTAAGCAC--CTGGCGGCCGTGGAATG-GCTAGGCACA-CAATCCGCC----- 462
consensus_5511#1 TGGTAGCACAACCGCGATCGTTGCCTGGGATGTGAGTTTGACGCTGAAGACGCGCAAAAT 649
* * * * * * * * * * * *
consensus_5511#0 AGGATGAT--GCAAGTTTGAACTCTGANGGACCCGT-TAGA-GCTCTTCGTCCTCT---- 691
consensus_5511#2 -GGATCCT--GT---CTCG---CCTGAGGGATTGATGTCAA-GTTTTGGAAGCATC---- 508
consensus_5511#1 TTTTTCCTTTATTACCTCAAAAAAAAAAAAAAAAAATTGATTATTTTAAGGGCGCCAATC 709
* * * * * * * * *
consensus_5511#0 -TATAACCCTCGACT-----AAAAAAAAAAAA-AAATAGGGGGCGGCCATCCCTAGATA- 743
consensus_5511#2 -TGGAAGGATGCCCG-----CTAGAGAAGTCT-CTTCTCGTTCCACTCATTTAATAAAA- 560
consensus_5511#1 CTTTATTTCCCCCCGGCGTACAGGAGGAACGTACTATCTGCACCTTCCTTTTAGGAAGAA 769
* * * * * * * * * * *
consensus_5511#0 -----TACCCTCTGCGGTTAATGGATGAACTGGTCATATCTTGCTCCTTCCTGTATAACC 798
consensus_5511#2 -----CCCCTTCCAGCCCTAAAAAAAAAAAAA---------------------------- 587
consensus_5511#1 GCACGCCCCCTCCCTCGGTANNANAGNGGGGGGGGAGGGGGGGGGTGGGTGGAAGAANAC 829
** ** ** *
consensus_5511#0 CCCCCTCCCCCCATGAGGACCTCCCTACGGGGGGTGGACCACCACCCTCTTTCTTCCTCT 858
consensus_5511#2 ------------------------------------------------------------
consensus_5511#1 CACCCTTTTCCCCGTAGACAGGGGA----------------------------------- 854
consensus_5511#0 CGCGGTGGCAGAGGGGGGCGGTAACATTAAAAAAT 893
consensus_5511#2 -----------------------------------
consensus_5511#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||