cluster # 5515

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 5515 cluster # 5515 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5515#0 length = 933 sequences # 1

consensus_5515#1 length = 451 sequences # 2

consensusID : consensus_5515#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 933
fasta sequence

                              [GTGGAAGACGACGAAGCGGGCGGCACCGCACCGCACCGAGGAGGAGGAGGAAGCGCGGCGAAGCTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAGCAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTGATGGTCCTGTGCTCCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTGACATCCAGCATGCCAACACCCTGTGAGTGTGTGCTCTCTGTTTTTTTGTTTTTTTTTCATCGTATTCTGTTCAACTTTCCCCAAATTTTCGTTCTCGCAGTGTTCGCCGTTTGGTTTTCGTTCTAGACTCGTACCGTGCGTGCTGATAGATCCGATGTGCGCGATGATGATGATGAAGAAGTAGGAGACAGTTAGTTAGGAATTCATGCTTTGTGTATGAATGGTGGTTAGTAGTAGCAGTAATCCGGTGGGGGTGAGTTGATGCACACCATTCACAGTGAAAGTGGTTGGATTCGACAGGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTGCCTCCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTCCTCTTCCTGGTGCAGTGGACGGATTGTAGCCTTGCCGGTGCTCTTGGCCTCCTCAGGATTCTCATTTATAAGGTTGCGTGTATGCGTGCGTGGTGCGAGTTCAGAATTCAAGTTTGCATATTGTCAGTGACTTTTTTTTAATCTAACGATTTTTTTGTTCGGCTTCGTTTGTTCATCAGGTTTATGTAGATGGAACGACCACCTTGTCAACTCATGAAAGGAAAGCGAGCATTAGGGAATTCTATGCTGTTATATTTCCCTCACTCATGCAACTCCACAAGGGTATCAGC]

[+] EMBL AK099987             [GTGGAAGACGACGAAGCGGGCGGCACCGCACCGCACCGAGGAGGAGGAGGAAGCGCGGCGAAGCTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAGCAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTGATGGTCCTGTGCTCCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTGACATCCAGCATGCCAACACCCTGTGAGTGTGTGCTCTCTGTTTTTTTGTTTTTTTTTCATCGTATTCTGTTCAACTTTCCCCAAATTTTCGTTCTCGCAGTGTTCGCCGTTTGGTTTTCGTTCTAGACTCGTACCGTGCGTGCTGATAGATCCGATGTGCGCGATGATGATGATGAAGAAGTAGGAGACAGTTAGTTAGGAATTCATGCTTTGTGTATGAATGGTGGTTAGTAGTAGCAGTAATCCGGTGGGGGTGAGTTGATGCACACCATTCACAGTGAAAGTGGTTGGATTCGACAGGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTGCCTCCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTCCTCTTCCTGGTGCAGTGGACGGATTGTAGCCTTGCCGGTGCTCTTGGCCTCCTCAGGATTCTCATTTATAAGGTTGCGTGTATGCGTGCGTGGTGCGAGTTCAGAATTCAAGTTTGCATATTGTCAGTGACTTTTTTTTAATCTAACGATTTTTTTGTTCGGCTTCGTTTGTTCATCAGGTTTATGTAGATGGAACGACCACCTTGTCAACTCATGAAAGGAAAGCGAGCATTAGGGAATTCTATGCTGTTATATTTCCCTCACTCATGCAACTCCACAAGGGTATCAGC]




>consensus_5515#0
GTGGAAGACGACGAAGCGGGCGGCACCGCACCGCACCGAGGAGGAGGAGGAAGCGCGGCG
AAGCTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAGCAGCTATGGTGGTGGCGA
GCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAG
GGGAGGAGGAGGAGGAGGAGGCAGTGATGGTCCTGTGCTCCATGCGCAAATCGTTCAAGG
ACTCGCTCAAGGTGCTCGAGGCTGACATCCAGCATGCCAACACCCTGTGAGTGTGTGCTC
TCTGTTTTTTTGTTTTTTTTTCATCGTATTCTGTTCAACTTTCCCCAAATTTTCGTTCTC
GCAGTGTTCGCCGTTTGGTTTTCGTTCTAGACTCGTACCGTGCGTGCTGATAGATCCGAT
GTGCGCGATGATGATGATGAAGAAGTAGGAGACAGTTAGTTAGGAATTCATGCTTTGTGT
ATGAATGGTGGTTAGTAGTAGCAGTAATCCGGTGGGGGTGAGTTGATGCACACCATTCAC
AGTGAAAGTGGTTGGATTCGACAGGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTG
CCTCCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTCCTCTTCCTGGTGCAGTG
GACGGATTGTAGCCTTGCCGGTGCTCTTGGCCTCCTCAGGATTCTCATTTATAAGGTTGC
GTGTATGCGTGCGTGGTGCGAGTTCAGAATTCAAGTTTGCATATTGTCAGTGACTTTTTT
TTAATCTAACGATTTTTTTGTTCGGCTTCGTTTGTTCATCAGGTTTATGTAGATGGAACG
ACCACCTTGTCAACTCATGAAAGGAAAGCGAGCATTAGGGAATTCTATGCTGTTATATTT
CCCTCACTCATGCAACTCCACAAGGGTATCAGC

consensusID : consensus_5515#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 451
fasta sequence

                              [GNANCGTGNGGNCNGGNACGTTNGGCNAACGAAGCGGGCGGCACCG-ACCGCACCGAGGAGGAGNAGGAAGCNCGGCGAANTTTCGGTGGGATANCTGCTTCGCGTCGCCATCNAGGAGCAGCTATGGTGGTGGCNAGCTAGCTCAAGGTACGCACGCCCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGNAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTNATGGTCCTNTNCTTCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTTGACATCCAGCATGCCAACACCCTGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTTCCTNCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTTCCTCTTCCTTGTNCAGTTGACGGATTTTAGCTTTCCGGTTCTCTTTGCCTCTAAGATCTATTATAAGTT]

[+] EMBL OSS1749A             [GNANCGTGNGGNCNGGNACGTTNGGCNAACGAAGCGGGCGGCACCG ACCGCACCGAGGAGGAGNAGGAAGCNCGGCGAANTTTCGGTGGGATANCTGCTTCGCGTCGCCATCNAGGAGCAGCTATGGTGGTGGCNAGCTAGCTCAAGGTACGCACGCCCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGNAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTNATGGTCCTNTNCTTCATGCGCAAATCGTTCAAGGACT                                                                                                                                                                                                ]
[+] EMBL OSS1859A             [                                 GCGGGCGGCACCGCACCGCACCGAGGAGGAGGAGGAAGCGCGGCGAAGTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAGCAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTTATGGTCCTGTGCTCCATGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTTGACATCCAGCATGCCAACACCCTGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTTCCTNCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCTTTCCTCTTCCTTGTNCAGTTGACGGATTTTAGCTTTCCGGTTCTCTTTGCCTCTAAGATCTATTATAAGTT]




>consensus_5515#1
GNANCGTGNGGNCNGGNACGTTNGGCNAACGAAGCGGGCGGCACCGACCGCACCGAGGAG
GAGNAGGAAGCNCGGCGAANTTTCGGTGGGATANCTGCTTCGCGTCGCCATCNAGGAGCA
GCTATGGTGGTGGCNAGCTAGCTCAAGGTACGCACGCCCGGTGGAGGAGGAGGAGGAGGA
GGAGGAAGNAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTNATGGTCCTNTNCTTCATG
CGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTTGACATCCAGCATGCCAACAC
CCTGGCCTCGGATTTCTCGAGGGATTATGACGGGGCTTTCCTNCAGATGCGGATGTCGTA
CAGCCCCGCCGCGCAGTTCTTTCCTCTTCCTTGTNCAGTTGACGGATTTTAGCTTTCCGG
TTCTCTTTGCCTCTAAGATCTATTATAAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5515#0      -----------------GTGGAAGACGA-CGAAGCGGGCGGCACCGCACCGCACCGAGGA 42
consensus_5515#1      GNANCGTGNGGNCNGGNACGTTNGGCNAACGAAGCGGGCGGCACCG-ACCGCACCGAGGA 59
                                         *   * * * ***************** *************

consensus_5515#0      GGAGGAGGAAGCGCGGCGAAGCTTTCGGTGGGATAGCTGCGTCGCGTCGCCATCGAGGAG 102
consensus_5515#1      GGAGNAGGAAGCNCGGCGAAN-TTTCGGTGGGATANCTGCTTCGCGTCGCCATCNAGGAG 118
                      **** ******* *******  ************* **** ************* *****

consensus_5515#0      CAGCTATGGTGGTGGCGAGCTAGCTCAAGGTACGCACGCGCGGTGGAGGAGGAGGAGGAG 162
consensus_5515#1      CAGCTATGGTGGTGGCNAGCTAGCTCAAGGTACGCACGCCCGGTGGAGGAGGAGGAGGAG 178
                      **************** ********************** ********************

consensus_5515#0      GAGGAGGAAGGAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTGATGGTCCTGTGCTCCA 222
consensus_5515#1      GAGGAGGAAGNAGAAGAGGGGAGGAGGAGGAGGAGGAGGCAGTNATGGTCCTNTNCTTCA 238
                      ********** ******************************** ******** * ** **

consensus_5515#0      TGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCT-GACATCCAGCATGCCAAC 281
consensus_5515#1      TGCGCAAATCGTTCAAGGACTCGCTCAAGGTGCTCGAGGCTTGACATCCAGCATGCCAAC 298
                      ***************************************** ******************

consensus_5515#0      ACCCTGTGAGTGTGTGCTCTCTGTTTTTTTGTTTTTTTTTCATCGTATTCTGTTCAACTT 341
consensus_5515#1      ACCCTGG----------CCTCGGATTTCTCGAGGGATTATGACGGGGCTTTCCTNCAGAT 348
                      ******            *** * *** * *     ** * *  *   * *  *  *  *

consensus_5515#0      TCCCCAAATTTTCGTTCTCGCAGTGTTCGCCGTTTGGTTTTCGTTCTAGACTCGTACCGT 401
consensus_5515#1      GCGGATGTCGTACAGCCCCGCCGCGCA-GTTCTTTCCTCTTCCTTGTNCAGTTGACGGAT 407
                       *        * *   * *** * *   *   ***  * *** ** *  * * *     *

consensus_5515#0      GCGTGCTGATAGATCCGATGTGCGCGATGATGATGATGAAGAAGTAGGAGACAGTTAGTT 461
consensus_5515#1      TTTAGCTTTCCGGTTCTCTTTGC-CTCTAAGATCTATTATAAGTT--------------- 451
                          ***    * * *  * *** *  * *     ** *  *  *               

consensus_5515#0      AGGAATTCATGCTTTGTGTATGAATGGTGGTTAGTAGTAGCAGTAATCCGGTGGGGGTGA 521
consensus_5515#1      ------------------------------------------------------------
                                                                                  

consensus_5515#0      GTTGATGCACACCATTCACAGTGAAAGTGGTTGGATTCGACAGGGCCTCGGATTTCTCGA 581
consensus_5515#1      ------------------------------------------------------------
                                                                                  

consensus_5515#0      GGGATTATGACGGGGCTTGCCTCCAGATGCGGATGTCGTACAGCCCCGCCGCGCAGTTCT 641
consensus_5515#1      ------------------------------------------------------------
                                                                                  

consensus_5515#0      TCCTCTTCCTGGTGCAGTGGACGGATTGTAGCCTTGCCGGTGCTCTTGGCCTCCTCAGGA 701
consensus_5515#1      ------------------------------------------------------------
                                                                                  

consensus_5515#0      TTCTCATTTATAAGGTTGCGTGTATGCGTGCGTGGTGCGAGTTCAGAATTCAAGTTTGCA 761
consensus_5515#1      ------------------------------------------------------------
                                                                                  

consensus_5515#0      TATTGTCAGTGACTTTTTTTTAATCTAACGATTTTTTTGTTCGGCTTCGTTTGTTCATCA 821
consensus_5515#1      ------------------------------------------------------------
                                                                                  

consensus_5515#0      GGTTTATGTAGATGGAACGACCACCTTGTCAACTCATGAAAGGAAAGCGAGCATTAGGGA 881
consensus_5515#1      ------------------------------------------------------------
                                                                                  

consensus_5515#0      ATTCTATGCTGTTATATTTCCCTCACTCATGCAACTCCACAAGGGTATCAGC 933
consensus_5515#1      ----------------------------------------------------