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Oryza sativa
cluster # 5521 cluster # 5521       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5521#0 length = 1308 sequences # 3  

consensusID : consensus_5521#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1308
fasta sequence
                              [AAAAGGAACGAGGTTCGTCGCCGCCGCCACTCCACCCCATAAACCCTAACCGATCGAGGGGGCGCAGCCAGTGACGGGAAGTCCACCGCCGCGCCACGCCTCGTCGTTGACACCGTCGCTGCTGCAACCGCATCACCGCCATCGGAACCGAGCACATCGTCGCCGCCGTCCACGTCAAGCCCGCGACGACAACGACGATGGCCGGCCGGACTTCCTCTTCCTCAACAACGACTGGTCACAACCCTAAATCCTCACTCCCTCTTTGTTCATTCATCTATTGTTGTTCATCCATTGCAAATAGAACCACCCGACTAGATCTAAGCCTAGGTGATCCAATAGACAACTCTAACAATGGTATCAGAGCCATCCTAGCGTTTAGTTTGGTTCGGGGATAGACATCCACAGAGAAGAAAGAAATCCAAAGAGAAAAGCAAACGATCCAACGGATCAAAAAGATCGAAACCCTAACCCTAATCTTACCTCGTCGCCGGCCGTCGATGACGCCGGCCACGGAGGGGGGGAGGGGCAAAGAGGCACCGCCGAGGAGCCACTCGACGGCCGCGCGCGCACCCGCGGGTGCACGCGCGCGCCGGCGAGGGGGCCCGTGGCGGCGCCGCCATCTCCGTTTTTCGGCCGCCGCTCTCTCTCACACGGTGGGGGCTAGAGACGGTGGGGGGAGCGGAGAAGAGAAAAGGAAGAGGGCGCAAGGGCCGCTGGCGGCGGCGACGCCGCTCCGCTCGGCCGCTCCGCCCGGCGGCGCGCTAGAGAAAAAGTGGACGCGCGGCGGCGCAAGGGTCGCCGGCGTAGATGACGCCACTCGGCGCGGCCGCACCCGCCCGCAAGAGAGAAGAGGCTAGGGTTTCGGCCGGCCGGCGGCTGGGGTCGGGTTTTTTTTGTCCCTCCGATCTCAGCGCCCGGCCGTCCGATCGAAACCCTAGCGATCGGACGGCCGACGGCGGCCGGGCCGAAAGCGGCCCAAGTGGGGAGCGCGCGGCGGCGGCTTTCCCGGCCCAGGCCCAGGTTGCGGCCTGGGGGAGGGGAGGGGGCGCTCACCCGCGCGCAAGGTGGCCATGGGCCGACCGGCAAAGGCCGGAAAAGTTCAATTTAGGTCCCTCGGGGCCGAAAGAAAAAGAAAAGAAAAGTTTAATAATAGGTCCTCTCAGAAGCTTTTTCAATTATGTATAATTATTGTGATTATTTCTAAGCAATTTGAACCAACGTGAAAATTGTTTAGAGAATAGATAAATGTGAGAAATGCTTCTGAACATGTATTTTGTATATTTTCATGCAAATTACAATAGAATTTTG]

[+] EMBL AK111317             [AAAAGGAACGAGGTTCGTCGCCGCCGCCACTCCACCCCATAAACCCTAACCGATCGAGGGGGCGCAGCCAGTGACGGGAAGTCCACCGCCGCGCCACGCCTCGTCGTTGACACCGTCGCTGCTGCAACCGCATCACCGCCATCGGAACCGAGCACATCGTCGCCGCCGTCCACGTCAAGCCCGCGACGACAACGACGATGGCCGGCCGGACTTCCTCTTCCTCAACAACGACTGGTCACAACCCTAAATCCTCACTCCCTCTTTGTTCATTCATCTATTGTTGTTCATCCATTGCAAATAGAACCACCCGACTAGATCTAAGCCTAGGTGATCCAATAGACAACTCTAACAATGGTATCAGAGCCATCCTAGCGTTTAGTTTGGTTCGGGGATAGACATCCACAGAGAAGAAAGAAATCCAAAGAGAAAAGCAAACGATCCAACGGATCAAAAAGATCGAAACCCTAACCCTAATCTTACCTCGTCGCCGGCCGTCGATGACGCCGGCCACGGAGGGGGGGAGGGGCAAAGAGGCACCGCCGAGGAGCCACTCGACGGCCGCGCGCGCACCCGCGGGTGCACGCGCGCGCCGGCGAGGGGGCCCGTGGCGGCGCCGCCATCTCCGTTTTTCGGCCGCCGCTCTCTCTCACACGGTGGGGGCTAGAGACGGTGGGGGGAGCGGAGAAGAGAAAAGGAAGAGGGCGCAAGGGCCGCTGGCGGCGGCGACGCCGCTCCGCTCGGCCGCTCCGCCCGGCGGCGCGCTAGAGAAAAAGTGGACGCGCGGCGGCGCAAGGGTCGCCGGCGTAGATGACGCCACTCGGCGCGGCCGCACCCGCCCGCAAGAGAGAAGAGGCTAGGGTTTCGGCCGGCCGGCGGCTGGGGTCGGGTTTTTTTTGTCCCTCCGATCTCAGCGCCCGGCCGTCCGATCGAAACCCTAGCGATCGGACGGCCGACGGCGGCCGGGCCGAAAGCGGCCCAAGTGGGGAGCGCGCGGCGGCGGCTTTCCCGGCCCAGGCCCAGGTTGCGGCCTGGGGGAGGGGAGGGGGCGCTCACCCGCGCGCAAGGTGGCCATGGGCCGACCGGCAAAGGCCGGAAAAGTTCAATTTAGGTCCCTCGGGGCCGAAAGAAAAAGAAAAGAAAAGTTTAATAATAGGTCCTCTCAGAAGCTTTTTCAATTATGTATAATTATTGTGATTATTTCTAAGCAATTTGAACCAACGTGAAAATTGTTTAGAGAATAGATAAATGTGAGAAATGCTTCTGAACATGTATTTTGTATATTTTCATGCAAATTACAATAGAATTTTG]
[+] EMBL CB640332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCTCGGCCGCTCCGCCCGGCGGCGCGCTAGAGAAAAAGTGGACGCGCGGCGGCGCAAGGGTCGCCGGCGTAGATGACGCCACTCGGCGCGGCCGCACCCGCCCGCAAGAGAGAAGAGGCTAGGGTTTCGGCCGGCCGGCGGCTGGGGTCGGG TTTTTTTGTCCCTCCGATCTCAGCGCCCGGCCGTCCGATCGAAACCCTAGCGATCGGACGGCCGACGGCGGCCGGGCCGAAAGCGGCCCAAGTGGGGAGCGCTCGGCGGCGGCTTTCCCGGCCCAGGCCCATGTTGCAGCCT                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB636636             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTCCCTCCGATCTTAGCGCCCGGCCGTCCGATCGAAACCCTAGCGATCGGACGGCCGACGGCGGCCGGGCCGAAAGCGGCCCAAGTGGGGAGCGCGCGGCGGCGGCTTTCCCGGCCCAGGCCCAGGTTGCGGCCTGGGGGAGGGGA                                                                                                                                                                                                                                                                           ]


>consensus_5521#0 AAAAGGAACGAGGTTCGTCGCCGCCGCCACTCCACCCCATAAACCCTAACCGATCGAGGG GGCGCAGCCAGTGACGGGAAGTCCACCGCCGCGCCACGCCTCGTCGTTGACACCGTCGCT GCTGCAACCGCATCACCGCCATCGGAACCGAGCACATCGTCGCCGCCGTCCACGTCAAGC CCGCGACGACAACGACGATGGCCGGCCGGACTTCCTCTTCCTCAACAACGACTGGTCACA ACCCTAAATCCTCACTCCCTCTTTGTTCATTCATCTATTGTTGTTCATCCATTGCAAATA GAACCACCCGACTAGATCTAAGCCTAGGTGATCCAATAGACAACTCTAACAATGGTATCA GAGCCATCCTAGCGTTTAGTTTGGTTCGGGGATAGACATCCACAGAGAAGAAAGAAATCC AAAGAGAAAAGCAAACGATCCAACGGATCAAAAAGATCGAAACCCTAACCCTAATCTTAC CTCGTCGCCGGCCGTCGATGACGCCGGCCACGGAGGGGGGGAGGGGCAAAGAGGCACCGC CGAGGAGCCACTCGACGGCCGCGCGCGCACCCGCGGGTGCACGCGCGCGCCGGCGAGGGG GCCCGTGGCGGCGCCGCCATCTCCGTTTTTCGGCCGCCGCTCTCTCTCACACGGTGGGGG CTAGAGACGGTGGGGGGAGCGGAGAAGAGAAAAGGAAGAGGGCGCAAGGGCCGCTGGCGG CGGCGACGCCGCTCCGCTCGGCCGCTCCGCCCGGCGGCGCGCTAGAGAAAAAGTGGACGC GCGGCGGCGCAAGGGTCGCCGGCGTAGATGACGCCACTCGGCGCGGCCGCACCCGCCCGC AAGAGAGAAGAGGCTAGGGTTTCGGCCGGCCGGCGGCTGGGGTCGGGTTTTTTTTGTCCC TCCGATCTCAGCGCCCGGCCGTCCGATCGAAACCCTAGCGATCGGACGGCCGACGGCGGC CGGGCCGAAAGCGGCCCAAGTGGGGAGCGCGCGGCGGCGGCTTTCCCGGCCCAGGCCCAG GTTGCGGCCTGGGGGAGGGGAGGGGGCGCTCACCCGCGCGCAAGGTGGCCATGGGCCGAC CGGCAAAGGCCGGAAAAGTTCAATTTAGGTCCCTCGGGGCCGAAAGAAAAAGAAAAGAAA AGTTTAATAATAGGTCCTCTCAGAAGCTTTTTCAATTATGTATAATTATTGTGATTATTT CTAAGCAATTTGAACCAACGTGAAAATTGTTTAGAGAATAGATAAATGTGAGAAATGCTT CTGAACATGTATTTTGTATATTTTCATGCAAATTACAATAGAATTTTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)