These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1375 fasta sequence [TTCGTCGTCGTCGTCGTCGGCGGCGGCGGCATGGCGGACGACGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGGGAGCGGGAGGAGCAGGAGAAGGCGCGGGAGGCGGCGGCGAACGCCAGGAGATGGGCGGCGCACAACGCCGCCCTCGCCGGCATCCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGAGCCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACAGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGCTGCAGAGACGATCCTCAGCTAATCACCTCAGAGGATGAACTGTCGTTGATATTGACTGGGCCTCATCGAGGACTTGTGCTGTATGACGCTCTGTACATTGAGGTCGATCTCAAGATGAAGGTGAAGGGTGATCAACAACAAGGCTGCAAGGACAAGCGACTCAGTAAAGGGCTGATAGTGTTGGATGGCGTACTGCTCTCAACAAACTTGAGCGACCATTTGCGTGCTGCGGTTAAAACCGCCACTCTTGATAGGAGAAGCACCATGCCCTGTGCCGTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTCTCCGTTGAGCTTCTGCATGATCAGGGAGGATGAGCTCATTTCTGTGGGGAGATCACTGCTTGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAGCAGATGATGGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCGCGTGATTGGCGTCTGTTTGGATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGACCTTGCAAAGGCAACTAACTACTGCAGACAAACCGTTGATTTTACACCTTGTGTCAATGGTGGAGACGAAGCTCGAGTTGTGGGTGGTGTCGGCAGTTTT-CTTGTGAAGGTTATTTGGTCGTTAATGGACCCAGTTATTGACAAGTAGTTTGTTATCTTTATCATCACGAATGTAGGCTTTTAGTTGTGTACTGATTGTCTGCAATAGTTATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCACTAGCAATAGCATGCCNCGGCTGAGGAAACCGTGCCGGCCAAAGATGTGTAAAAA] [+] EMBL AK064094 [TTCGTCGTCGTCGTCGTCGGCGGCGGCGGCATGGCGGACGACGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGGGAGCGGGAGGAGCAGGAGAAGGCGCGGGAGGCGGCGGCGAACGCCAGGAGATGGGCGGCGCACAACGCCGCCCTCGCCGGCATCCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGAGCCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACAGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGCTGCAGAGACGATCCTCAGCTAATCACCTCAGAGGATGAACTGTCGTTGATATTGACTGGGCCTCATCGAGGACTTGTGCTGTATGACGCTCTGTACATTGAGGTCGATCTCAAGATGAAGGTGAAGGGTGATCAACAACAAGGCTGCAAGGACAAGCGACTCAGTAAAGGGCTGATAGTGTTGGATGGCGTACTGCTCTCAACAAACTTGAGCGACCATTTGCGTGCTGCGGTTAAAACCGCCACTCTTGATAGGAGAAGCACCATGCCCTGTGCCGTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTCTCCGTTGAGCTTCTGCATGATCAGGGAGGATGAGCTCATTTCTGTGGGGAGATCACTGCTTGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAGCAGATGATGGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCGCGTGATTGGCGTCTGTTTGGATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGACCTTGCAAAGGCAACTAACTACTGCAGACAAACCGTTGATTTTACACCTTGTGTCAATGGTGGAGACGAAGCTCGAGTTGTGGGTGGTGTCGGCAGTTTT CTTGTGAAGGTTATTTGGTCGTTAATGGACCCAGTTATTGACAAGTAGTTTGTTATCTTTATCATCACGAATGTAGGCTTTTAGTTGTGTACTGATTGTCTGCAATAGTTATGTACTGTTGA ] [+] EMBL AU067977 [ GGCTATTGCGCCNCGTGATTGGCGTCTGTTTGGATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGNCCTTGCAAAGGCAACTAACTA TGCAGACAAACCGTTGATTTTACACCTNGTGTCAATGGTGGAGACGAAGCTCGAGTTGTGGGTGGTGTCGGCAGTTTTCCTTGTGAAGGTTATTTGGTCGTTAATGGNCCCAGTTATTGACNAGTAGTTTGTTNTCTTTATCATCACGAATNTAGGCTTNTAGTTGTGTACTGATTGTCTGCAATAGTTATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCACTAGCAATAGCATGCCNCGGCTGAGGAAACCGTGCCGGCCAAAGATGTGTAAAAA] consensusID : consensus_5525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [GCGGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGANCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACGGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGC] [+] EMBL AU067976 [GCGGGAGACGGCGACTGCGTGAACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCGGAGAGGCGCGAGTACGACCCCGCCGAGGAGACGTACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCCCGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGANCCTCCACTTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGCTCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACGGTTCTGTCATCGCCAGAGACCAGCTTGATTACAAATGTGTACATCTCTTCCGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5525#0 TTCGTCGTCGTCGTCGTCGGCGGCGGCGGCATGGCGGACGACGGAGACGGCGACTGCGTG 60 consensus_5525#1 ---------------------------------------GCGGGAGACGGCGACTGCGTG 21 * ****************** consensus_5525#0 AACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCG 120 consensus_5525#1 AACCTGGAGCCTTTCTTCTACGACGAGGCAGCGACCGTGGCCGAGGCGGCGGCGGCGGCG 81 ************************************************************ consensus_5525#0 GAGAGGCGGGAGCGGGAGGAGCAGGAGAAGGCGCGGGAGGCGGCGGCGAACGCCAGGAGA 180 consensus_5525#1 GAGAGGCG---------------------------------------------------- 89 ******** consensus_5525#0 TGGGCGGCGCACAACGCCGCCCTCGCCGGCATCCGCGAGTACGACCCCGCCGAGGAGACG 240 consensus_5525#1 -----------------------------------CGAGTACGACCCCGCCGAGGAGACG 114 ************************* consensus_5525#0 TACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCC 300 consensus_5525#1 TACATCTACACCCGCTACCACTACGCGGACCTGTCCGAGTTCGACCTCGACGAGGAGTCC 174 ************************************************************ consensus_5525#0 CGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGAGCCCTCCAC 360 consensus_5525#1 CGCCTCCCTCCCATGCGCCACACCGCCGCCACCTACGCCCCGCCGGCGCGANCC-TCCAC 233 *************************************************** ** ***** consensus_5525#0 TTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGC 420 consensus_5525#1 TTCCTCTGCGATATGATCAACGTCCTCGCCGTCCGCATCATCCTCCCCTCCTCCGATCGC 293 ************************************************************ consensus_5525#0 TCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACAGTTCTGTCATCGCCAGAGAC 480 consensus_5525#1 TCTGATGGTGGTGGTGTCGGCTTCCCCATCAGCGTCTACGGTTCTGTCATCGCCAGAGAC 353 *************************************** ******************** consensus_5525#0 CAGCTTGATTACAAATGTGTACATCTCTTCCGCCGCTGCAGAGACGATCCTCAGCTAATC 540 consensus_5525#1 CAGCTTGATTACAAATGTGTACATCTCTTCCGCCGC------------------------ 389 ************************************ consensus_5525#0 ACCTCAGAGGATGAACTGTCGTTGATATTGACTGGGCCTCATCGAGGACTTGTGCTGTAT 600 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 GACGCTCTGTACATTGAGGTCGATCTCAAGATGAAGGTGAAGGGTGATCAACAACAAGGC 660 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 TGCAAGGACAAGCGACTCAGTAAAGGGCTGATAGTGTTGGATGGCGTACTGCTCTCAACA 720 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 AACTTGAGCGACCATTTGCGTGCTGCGGTTAAAACCGCCACTCTTGATAGGAGAAGCACC 780 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 ATGCCCTGTGCCGTGCAGGTCACTTACGCGTATGTCACGCGTGCAGTGGAGGCCACCGTC 840 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 TCCGTTGAGCTTCTGCATGATCAGGGAGGATGAGCTCATTTCTGTGGGGAGATCACTGCT 900 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 TGCACCAGCACTATCCGAGATAGCATTGTGCTCCATGATAGCAGATTACTAGCAGATGAT 960 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 GGCATTGTGGCTGATGGATCTACTGTCCGGCTATTGCGCCGCGTGATTGGCGTCTGTTTG 1020 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 GATGAGGTGCTGATAGTGACAATTGTTGCTCAAGATGGTGACCTTGCAAAGGCAACTAAC 1080 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 TACTGCAGACAAACCGTTGATTTTACACCTTGTGTCAATGGTGGAGACGAAGCTCGAGTT 1140 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 GTGGGTGGTGTCGGCAGTTTTCTTGTGAAGGTTATTTGGTCGTTAATGGACCCAGTTATT 1200 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 GACAAGTAGTTTGTTATCTTTATCATCACGAATGTAGGCTTTTAGTTGTGTACTGATTGT 1260 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 CTGCAATAGTTATGTACTGTTGAGAGGAANAAGAAAACGTTTGCTCCCTGGAATTAGGCA 1320 consensus_5525#1 ------------------------------------------------------------ consensus_5525#0 CTAGCAATAGCATGCCNCGGCTGAGGAAACCGTGCCGGCCAAAGATGTGTAAAAA 1375 consensus_5525#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||