These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5528#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [ACCAGTTCACCACACCTTTGAGAAGATGCATCCCCTATGTTCGTTGCCATTACTCATCATCATCCTACTCTCATCGGTGCCACCTTCTATGCAAGAATCCGGTGCCTACTTCCGGTACACAAATTGTACCCCAGCTTCTTACCAGTGTGGATCACTCAAGTTCGATGTCGATTACCCCTTCTCAGCGAATGGCGTCCACCGTCCAGACTACTGCTCTTACCCAGGATATCGCCTCATCTGCAGCCCAGACAACAAGCTCATGATCCACATGAATTCCACCGCGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGGCATGCCTGGATCGCTATCACAACACCACCATCGACGAGAGCAAGTTCATGTACACAGACCGTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAACTTTTCCTCTCTGCCTCTTATCTATGATCTTGTGTCGTGCGTTTCTGGGGGAAGCTCCTACTATAGGTTGCACAAGAACAAGGATGACTCGTTGGAATCAGATATTCTGGGATCATGCAGCTCAACTATCGTTGTTCCATGCAACTCAACCATGGCAGGCTCATTGGCTGCTGGAAATTCTAGCCTTGCGGATGTGATTAGAGGAGGTTTCACGGCGAGATGGAAAGTTGGGCTAGGTTGGTGTAGTGATTGTAAGGCTTCTGGAGGGCATTGTGGGTTTAATGGCAGTTTTCCTGATCAGTATACATGTTACTGCCCTTATGGTCAAGCTATTGGATCA] [+] EMBL CB670205 [ACCAGTTCACCACACCTTTGAGAAGATGCATCCCCTATGTTCGTTGCCATTACTCATCATCATCCTACTCTCATCGGTGCCACCTTCTATGCAAGAATCCGGTGCCTACTTCCGGTACACAAATTGTACCCCAGCTTCTTACCAGTGTGGATCACTCAAGTTCGATGTCGATTACCCCTTCTCAGCGAATGGCGTCCACCGTCCAGACTACTGCTCTTACCCAGGATATCGCCTCATCTGCAGCCCAGACAACAAGCTCATGATCCACATGAATTCCACCGCGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGGCATGCCTGGATCGCTATCACAACACCACCATCGACGAGAGCAAGTTCATGTACACAGACCGTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAACTTTTCCTCTCTGCCTCTTATCTATGATCTTGTGTCGTGCGTTTCTGGGGGAAGCTCCTACTATAGGTTGCACAAGAACAAGGATGACTCGTTGGAATCAGATATTCTGGGATCATGCAGCTCAACTATCGTTGTTCCATGCAACTCAACCATGGCAGGCTCATTGGCTGCTGGAAATTCTAGCCTTGCGGATGTGATTAGAGGAGGTTTCACGGCGAGATGGAAAGTTGGGCTAGGTTGGTGTAGTGATTGTAAGGCTTCTGGAGGGCATTGTGGGTTTAATGGCAGTTTTCCTGATCAGTATACATGTTACTGCCCTTATGGTCAAGCTATTGGATCA] consensusID : consensus_5528#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 744 fasta sequence [TCATCATCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATCACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGGTACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTACCCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTCATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACATGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATCTATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAGGATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTCAATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGAGGGGGTTTCACGGAGAGATGGAAAGTTGGGGTACGTTGGTGTAGTGATTGTAAAGCTTCTGGAGGGCATTGTGGGTTTAATGGCAG] [+] EMBL CB619240 [TCATCATCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATCACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGGTACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTACCCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTCATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACATGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATCTATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAGGATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTCAATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGAGGGGGTTTCACGGAGAGATGGAAAGTTGGGGTACGTTGGTGTAGTGATTGTAAAGCTTCTGGAGGGCATTGTGGGTTTAATGGCAG] [+] EMBL CB619203 [TCATCATCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATCACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGGTACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTACCCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTCATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACATGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATCTATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAGGATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTCAATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGAGGGGGTTTCACGGAAAGATGGAAAGTTGGGGTAGGTTGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5528#0 --ACCAGTTCACCACACCTTTGAGAAGATGCATCCCCTATGTTCGTTGCCATTACTCATC 58 consensus_5528#1 TCATCA--TCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATC 58 * ** ******* **** *** ************* *** ** ***** * ****** consensus_5528#0 ATCATCCTACT---CTCATCGGTGCCACCTTCTATGCAAGAATCCGGTGCCTACTTCCGG 115 consensus_5528#1 ACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGG 118 * * * ** ** *** ** ******* **** * ********** ***** ******* consensus_5528#0 TACACAAATTGTACCCCAGCTTCTTACCAGTGTGGATCACTCAAGTTCGATGTCGATTAC 175 consensus_5528#1 TACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTAC 178 *************** **************** ************ **** ********* consensus_5528#0 CCCTTCTCAGCGAATGGCGTCCACCGTCCAGACTACTGCTCTTACCCAGGATATCGCCTC 235 consensus_5528#1 CCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTC 238 ******** ************ ******** **************** ** ** ** *** consensus_5528#0 ATCTGCAGCCCAGACAACAAGCTCATGATCCACATGAATTCCACCGCGTTCCAGGTTACA 295 consensus_5528#1 ATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACA 298 ******* *************** ********************** ************* consensus_5528#0 GATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGGCA 355 consensus_5528#1 GATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACA 358 ********************************************************* ** consensus_5528#0 TGCCTGGATCGCTATCACAACACCACCATCGACGAGAGCAAGTTCATGTACACAGACCGT 415 consensus_5528#1 TGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTT 418 **** *********************************** ***************** * consensus_5528#0 GATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAACTTTTCCTCTCTGCCTCTTATC 475 consensus_5528#1 GATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATC 478 ************************************** * *** ********* ***** consensus_5528#0 TATGATCTTGTGTCGTGCGTTTCTGGGGGAAGCTCCTACTATAGGTTGCACAAGAACAAG 535 consensus_5528#1 TATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAG 538 ********* **** ****************************** ************** consensus_5528#0 GATGACTCGTTGGAATCAGATATTCTGGGATCATGCAGCTCAACTATCGTTGTTCCATGC 595 consensus_5528#1 GATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTC 598 ******* *********************************** * ************ * consensus_5528#0 AACTCAACCATGGCAGGCTCATTGGCTGCTGGAAATTCTAGCCTTGCGGATGTGATTAGA 655 consensus_5528#1 AATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGA 658 ** ************************** **************** ************* consensus_5528#0 GGAGGTTTCACGGCGAGATGGAAAGTTGGGCTAGGTTGGTGTAGTGATTGTAAGGCTTCT 715 consensus_5528#1 GGGGGTTTCACGGAGAGATGGAAAGTTGGGGTACGTTGGTGTAGTGATTGTAAAGCTTCT 718 ** ********** **************** ** ******************* ****** consensus_5528#0 GGAGGGCATTGTGGGTTTAATGGCAGTTTTCCTGATCAGTATACATGTTACTGCCCTTAT 775 consensus_5528#1 GGAGGGCATTGTGGGTTTAATGGCAG---------------------------------- 744 ************************** consensus_5528#0 GGTCAAGCTATTGGATCA 793 consensus_5528#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||