cluster # 5528

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Oryza sativa
cluster # 5528 cluster # 5528 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5528#0 length = 793 sequences # 1

consensus_5528#1 length = 744 sequences # 2

consensusID : consensus_5528#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 793
fasta sequence

                              [ACCAGTTCACCACACCTTTGAGAAGATGCATCCCCTATGTTCGTTGCCATTACTCATCATCATCCTACTCTCATCGGTGCCACCTTCTATGCAAGAATCCGGTGCCTACTTCCGGTACACAAATTGTACCCCAGCTTCTTACCAGTGTGGATCACTCAAGTTCGATGTCGATTACCCCTTCTCAGCGAATGGCGTCCACCGTCCAGACTACTGCTCTTACCCAGGATATCGCCTCATCTGCAGCCCAGACAACAAGCTCATGATCCACATGAATTCCACCGCGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGGCATGCCTGGATCGCTATCACAACACCACCATCGACGAGAGCAAGTTCATGTACACAGACCGTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAACTTTTCCTCTCTGCCTCTTATCTATGATCTTGTGTCGTGCGTTTCTGGGGGAAGCTCCTACTATAGGTTGCACAAGAACAAGGATGACTCGTTGGAATCAGATATTCTGGGATCATGCAGCTCAACTATCGTTGTTCCATGCAACTCAACCATGGCAGGCTCATTGGCTGCTGGAAATTCTAGCCTTGCGGATGTGATTAGAGGAGGTTTCACGGCGAGATGGAAAGTTGGGCTAGGTTGGTGTAGTGATTGTAAGGCTTCTGGAGGGCATTGTGGGTTTAATGGCAGTTTTCCTGATCAGTATACATGTTACTGCCCTTATGGTCAAGCTATTGGATCA]

[+] EMBL CB670205             [ACCAGTTCACCACACCTTTGAGAAGATGCATCCCCTATGTTCGTTGCCATTACTCATCATCATCCTACTCTCATCGGTGCCACCTTCTATGCAAGAATCCGGTGCCTACTTCCGGTACACAAATTGTACCCCAGCTTCTTACCAGTGTGGATCACTCAAGTTCGATGTCGATTACCCCTTCTCAGCGAATGGCGTCCACCGTCCAGACTACTGCTCTTACCCAGGATATCGCCTCATCTGCAGCCCAGACAACAAGCTCATGATCCACATGAATTCCACCGCGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGGCATGCCTGGATCGCTATCACAACACCACCATCGACGAGAGCAAGTTCATGTACACAGACCGTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAACTTTTCCTCTCTGCCTCTTATCTATGATCTTGTGTCGTGCGTTTCTGGGGGAAGCTCCTACTATAGGTTGCACAAGAACAAGGATGACTCGTTGGAATCAGATATTCTGGGATCATGCAGCTCAACTATCGTTGTTCCATGCAACTCAACCATGGCAGGCTCATTGGCTGCTGGAAATTCTAGCCTTGCGGATGTGATTAGAGGAGGTTTCACGGCGAGATGGAAAGTTGGGCTAGGTTGGTGTAGTGATTGTAAGGCTTCTGGAGGGCATTGTGGGTTTAATGGCAGTTTTCCTGATCAGTATACATGTTACTGCCCTTATGGTCAAGCTATTGGATCA]




>consensus_5528#0
ACCAGTTCACCACACCTTTGAGAAGATGCATCCCCTATGTTCGTTGCCATTACTCATCAT
CATCCTACTCTCATCGGTGCCACCTTCTATGCAAGAATCCGGTGCCTACTTCCGGTACAC
AAATTGTACCCCAGCTTCTTACCAGTGTGGATCACTCAAGTTCGATGTCGATTACCCCTT
CTCAGCGAATGGCGTCCACCGTCCAGACTACTGCTCTTACCCAGGATATCGCCTCATCTG
CAGCCCAGACAACAAGCTCATGATCCACATGAATTCCACCGCGTTCCAGGTTACAGATAT
CGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGGCATGCCT
GGATCGCTATCACAACACCACCATCGACGAGAGCAAGTTCATGTACACAGACCGTGATCA
GTTCCTGACGGTCTATGTCAACTGCAGTGCCAACTTTTCCTCTCTGCCTCTTATCTATGA
TCTTGTGTCGTGCGTTTCTGGGGGAAGCTCCTACTATAGGTTGCACAAGAACAAGGATGA
CTCGTTGGAATCAGATATTCTGGGATCATGCAGCTCAACTATCGTTGTTCCATGCAACTC
AACCATGGCAGGCTCATTGGCTGCTGGAAATTCTAGCCTTGCGGATGTGATTAGAGGAGG
TTTCACGGCGAGATGGAAAGTTGGGCTAGGTTGGTGTAGTGATTGTAAGGCTTCTGGAGG
GCATTGTGGGTTTAATGGCAGTTTTCCTGATCAGTATACATGTTACTGCCCTTATGGTCA
AGCTATTGGATCA

consensusID : consensus_5528#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 744
fasta sequence

                              [TCATCATCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATCACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGGTACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTACCCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTCATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACATGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATCTATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAGGATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTCAATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGAGGGGGTTTCACGGAGAGATGGAAAGTTGGGGTACGTTGGTGTAGTGATTGTAAAGCTTCTGGAGGGCATTGTGGGTTTAATGGCAG]

[+] EMBL CB619240             [TCATCATCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATCACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGGTACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTACCCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTCATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACATGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATCTATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAGGATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTCAATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGAGGGGGTTTCACGGAGAGATGGAAAGTTGGGGTACGTTGGTGTAGTGATTGTAAAGCTTCTGGAGGGCATTGTGGGTTTAATGGCAG]
[+] EMBL CB619203             [TCATCATCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATCACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGGTACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTACCCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTCATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACAGATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACATGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTTGATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATCTATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAGGATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTCAATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGAGGGGGTTTCACGGAAAGATGGAAAGTTGGGGTAGGTTGGT                                              ]




>consensus_5528#1
TCATCATCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATCAC
CCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGGTA
CACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTACCC
CTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTCAT
CTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACAGA
TATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACATG
CCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTTGA
TCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATCTA
TGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAGGA
TGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTCAA
TTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGAGG
GGGTTTCACGGAGAGATGGAAAGTTGGGGTACGTTGGTGTAGTGATTGTAAAGCTTCTGG
AGGGCATTGTGGGTTTAATGGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5528#0      --ACCAGTTCACCACACCTTTGAGAAGATGCATCCCCTATGTTCGTTGCCATTACTCATC 58
consensus_5528#1      TCATCA--TCACCACGCCTTGGAGCAGATGCATCCCCTGTGTGCGCTGCCACTCCTCATC 58
                        * **  ******* **** *** ************* *** ** ***** * ******

consensus_5528#0      ATCATCCTACT---CTCATCGGTGCCACCTTCTATGCAAGAATCCGGTGCCTACTTCCGG 115
consensus_5528#1      ACCCTACTGCTGATCTCTTCAGTGCCACTTTCTGTACAAGAATCCGATGCCTTCTTCCGG 118
                      * * * ** **   *** ** ******* **** * ********** ***** *******

consensus_5528#0      TACACAAATTGTACCCCAGCTTCTTACCAGTGTGGATCACTCAAGTTCGATGTCGATTAC 175
consensus_5528#1      TACACAAATTGTACCACAGCTTCTTACCAGTGCGGATCACTCAAGCTCGACGTCGATTAC 178
                      *************** **************** ************ **** *********

consensus_5528#0      CCCTTCTCAGCGAATGGCGTCCACCGTCCAGACTACTGCTCTTACCCAGGATATCGCCTC 235
consensus_5528#1      CCCTTCTCGGCGAATGGCGTCGACCGTCCAAACTACTGCTCTTACCCTGGGTACCGTCTC 238
                      ******** ************ ******** **************** ** ** ** ***

consensus_5528#0      ATCTGCAGCCCAGACAACAAGCTCATGATCCACATGAATTCCACCGCGTTCCAGGTTACA 295
consensus_5528#1      ATCTGCAACCCAGACAACAAGCTGATGATCCACATGAATTCCACCGTGTTCCAGGTTACA 298
                      ******* *************** ********************** *************

consensus_5528#0      GATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGGCA 355
consensus_5528#1      GATATCGACTATGGCAACAAGTTTCTTGCGGTCATCGATCAAACTCAACCTCAGGAGACA 358
                      ********************************************************* **

consensus_5528#0      TGCCTGGATCGCTATCACAACACCACCATCGACGAGAGCAAGTTCATGTACACAGACCGT 415
consensus_5528#1      TGCCCGGATCGCTATCACAACACCACCATCGACGAGAGCAGGTTCATGTACACAGACCTT 418
                      **** *********************************** ***************** *

consensus_5528#0      GATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAACTTTTCCTCTCTGCCTCTTATC 475
consensus_5528#1      GATCAGTTCCTGACGGTCTATGTCAACTGCAGTGCCAAGTCTTCATCTCTGCCTTTTATC 478
                      ************************************** * *** ********* *****

consensus_5528#0      TATGATCTTGTGTCGTGCGTTTCTGGGGGAAGCTCCTACTATAGGTTGCACAAGAACAAG 535
consensus_5528#1      TATGATCTTCTGTCATGCGTTTCTGGGGGAAGCTCCTACTATAGGCTGCACAAGAACAAG 538
                      ********* **** ****************************** **************

consensus_5528#0      GATGACTCGTTGGAATCAGATATTCTGGGATCATGCAGCTCAACTATCGTTGTTCCATGC 595
consensus_5528#1      GATGACTAGTTGGAATCAGATATTCTGGGATCATGCAGCTCAAGTTTCGTTGTTCCATTC 598
                      ******* *********************************** * ************ *

consensus_5528#0      AACTCAACCATGGCAGGCTCATTGGCTGCTGGAAATTCTAGCCTTGCGGATGTGATTAGA 655
consensus_5528#1      AATTCAACCATGGCAGGCTCATTGGCTGCCGGAAATTCTAGCCTTGTGGATGTGATTAGA 658
                      ** ************************** **************** *************

consensus_5528#0      GGAGGTTTCACGGCGAGATGGAAAGTTGGGCTAGGTTGGTGTAGTGATTGTAAGGCTTCT 715
consensus_5528#1      GGGGGTTTCACGGAGAGATGGAAAGTTGGGGTACGTTGGTGTAGTGATTGTAAAGCTTCT 718
                      ** ********** **************** ** ******************* ******

consensus_5528#0      GGAGGGCATTGTGGGTTTAATGGCAGTTTTCCTGATCAGTATACATGTTACTGCCCTTAT 775
consensus_5528#1      GGAGGGCATTGTGGGTTTAATGGCAG---------------------------------- 744
                      **************************                                  

consensus_5528#0      GGTCAAGCTATTGGATCA 793
consensus_5528#1      ------------------