|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2076 fasta sequence
[CCAAGAGCCAGGCAAATCTCGAGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGACACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTACAAGCGCCGCCGCCCTCTCGATCTGTTGTCGATTTCTTGTTTTTGGATTAGGGGTGGTTCATGATTTCGCCGACATGGATCTTCGCTTCGTGCGGATGTTGTTACTTTTGCGGATCTAGTATCACATATCAATCTCGGTTGATACCATTATTTATGTAAACCTAGTTAATTTGTTTTGGGGATAGATGCAACATGGCCTATGGCCTGGGATTCGACCTCAACGACATGGCTGGGAGAGAAGCAAAATAGCAGCATAGTGCATAGGCTCAGAGTTGATGTAGTTAATCTCTTTCTGGTGGATTCCTTGCTTTATGTTACTATGCACTGCGCGCCCTGCTGTGTAATGTTTACGAATCTGAAAGAGTGAAACATGGGCTATTGATTTGGGTCATTGGGTGATTGAAGGTCAATGCCAACTATCAATCTACTGGTGATTGGCTGGGATTGATTCCTTCTCGTTCTAGCAATCAAACAAAATTTCCTATCTAAATCAAGCTGATCTATATCAGCCCCTGTTTCAAAACTCTGAACTCTATCAACTACACCCATTGCAACCTGGAGGTGTGAAACTCTTTTTCTTTTATTTTCATATATTCATATTTTTCAAGCTATGACAAGACAAAACAACAACAATAGAATCCCTTTTCTTTTTGCTGTATTTCCCATAGAACCACAGAATCAGCGGCATGATCATGTATATTAGGGCCAATAACCTCACTTGAAACAACTAGTGACCATTCACCGGTATCTGAAACTCAACAGTTTACCCTATGAGTGATAGGAACAATATACAAAATGCTGAATCAGTACTACAAACTTTTTTTTTTCATGAGTGTAGTCTTATTCTTATAAACTGCATGGTAATCTGAGTGTGGAACCATGAAAACATTCATAGACATGATCACTTAACTGAACACTTACTTCTCGGTGACAAGTGAAATGCCATACAGGATTAGTTCATTTTAGCCCTCTCCATGAGGGTTCTACTTAACATTGTATCTGCAAGGTATTGTAGTCTATTGGACCTTGGTACCCCCATCACTGACTGTCCTGTTTGTAGGCGTGTCTACATTTTTGCATAGCATGTAATGTTTTGTCATTATTGGGGCATCTGAATCTGTATAGTTCATTGATTATAGCATTGGAAGTTTGGATCCTCATTATATGCAGGATTGCATGTGGTTGTTACTTTACATTCATTTCTCGCAGTTCCTCAGGATATTTCTGATTTCTTACTATTCAACATCATATCTTTTTGTGATTTGGATAAGACGACAATTGTCTTTTGATGCTTGACTATGATCATTGAGAAAGTAACTAGTATTTGATTATTCAAATGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGGTAACTGCAACAACCTCTGTTTAATCCCCTTTCCGCGAATTTATTTACATTTTCTCATCTCATTTGTTTTCGTTCAACGCTATCTTTAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGTGGCCATTTTGTACATCAATTCTTGAGTCTTCAGTTT]
[+] EMBL AK068354 [CCAAGAGCCAGGCAAATCTCGAGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGACACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTACAAGCGCCGCCGCCCTCTCGATCTGTTGTCGATTTCTTGTTTTTGGATTAGGGGTGGTTCATGATTTCGCCGACATGGATCTTCGCTTCGTGCGGATGTTGTTACTTTTGCGGATCTAGTATCACATATCAATCTCGGTTGATACCATTATTTATGTAAACCTAGTTAATTTGTTTTGGGGATAGATGCAACATGGCCTATGGCCTGGGATTCGACCTCAACGACATGGCTGGGAGAGAAGCAAAATAGCAGCATAGTGCATAGGCTCAGAGTTGATGTAGTTAATCTCTTTCTGGTGGATTCCTTGCTTTATGTTACTATGCACTGCGCGCCCTGCTGTGTAATGTTTACGAATCTGAAAGAGTGAAACATGGGCTATTGATTTGGGTCATTGGGTGATTGAAGGTCAATGCCAACTATCAATCTACTGGTGATTGGCTGGGATTGATTCCTTCTCGTTCTAGCAATCAAACAAAATTTCCTATCTAAATCAAGCTGATCTATATCAGCCCCTGTTTCAAAACTCTGAACTCTATCAACTACACCCATTGCAACCTGGAGGTGTGAAACTCTTTTTCTTTTATTTTCATATATTCATATTTTTCAAGCTATGACAAGACAAAACAACAACAATAGAATCCCTTTTCTTTTTGCTGTATTTCCCATAGAACCACAGAATCAGCGGCATGATCATGTATATTAGGGCCAATAACCTCACTTGAAACAACTAGTGACCATTCACCGGTATCTGAAACTCAACAGTTTACCCTATGAGTGATAGGAACAATATACAAAATGCTGAATCAGTACTACAAACTTTTTTTTTTCATGAGTGTAGTCTTATTCTTATAAACTGCATGGTAATCTGAGTGTGGAACCATGAAAACATTCATAGACATGATCACTTAACTGAACACTTACTTCTCGGTGACAAGTGAAATGCCATACAGGATTAGTTCATTTTAGCCCTCTCCATGAGGGTTCTACTTAACATTGTATCTGCAAGGTATTGTAGTCTATTGGACCTTGGTACCCCCATCACTGACTGTCCTGTTTGTAGGCGTGTCTACATTTTTGCATAGCATGTAATGTTTTGTCATTATTGGGGCATCTGAATCTGTATAGTTCATTGATTATAGCATTGGAAGTTTGGATCCTCATTATATGCAGGATTGCATGTGGTTGTTACTTTACATTCATTTCTCGCAGTTCCTCAGGATATTTCTGATTTCTTACTATTCAACATCATATCTTTTTGTGATTTGGATAAGACGACAATTGTCTTTTGATGCTTGACTATGATCATTGAGAAAGTAACTAGTATTTGATTATTCAAATGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGGTAACTGCAACAACCTCTGTTTAATCCCCTTTCCGCGAATTTATTTACATTTTCTCATCTCATTTGTTTTCGTTCAACGCTATCTTTAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGTGGCCATTTTGTACATCAATTCTTGAGTCTTCAGTTT]
consensusID : consensus_5532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 590 fasta sequence
[ACGAGGGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGA-CACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGA-TATCTGGATGCCCGTCATCA-CCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAG-CAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTA-TTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGT]
[+] EMBL BP184982 [ACGAGGGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGA CACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGA TATCTGGATGCCCGTCATCA CCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAG CAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTA TTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGT]
[+] EMBL OSS5089A [ CGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAA NGNANCACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCA GTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGATTATCTGGGTGCCCGTCATCANCGGCTTTTGCCGGTGNAAGGCGGGGGTTTNCAGGGACAAGTTGTGAAAGCAACCAAGGAGGGCCAGGNGATTTCC AACAATTGGCTCCTACATGTACCTTCACATGGGTATTTTTTTGACCCTGTtcc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5532#0 CCAAGAGCCAGGCAAATCTCGAGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGC 60
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 TTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCG 120
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 GACACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTACAAGCGCCGCCGCCC 180
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 TCTCGATCTGTTGTCGATTTCTTGTTTTTGGATTAGGGGTGGTTCATGATTTCGCCGACA 240
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 TGGATCTTCGCTTCGTGCGGATGTTGTTACTTTTGCGGATCTAGTATCACATATCAATCT 300
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 CGGTTGATACCATTATTTATGTAAACCTAGTTAATTTGTTTTGGGGATAGATGCAACATG 360
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 GCCTATGGCCTGGGATTCGACCTCAACGACATGGCTGGGAGAGAAGCAAAATAGCAGCAT 420
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 AGTGCATAGGCTCAGAGTTGATGTAGTTAATCTCTTTCTGGTGGATTCCTTGCTTTATGT 480
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 TACTATGCACTGCGCGCCCTGCTGTGTAATGTTTACGAATCTGAAAGAGTGAAACATGGG 540
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 CTATTGATTTGGGTCATTGGGTGATTGAAGGTCAATGCCAACTATCAATCTACTGGTGAT 600
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 TGGCTGGGATTGATTCCTTCTCGTTCTAGCAATCAAACAAAATTTCCTATCTAAATCAAG 660
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 CTGATCTATATCAGCCCCTGTTTCAAAACTCTGAACTCTATCAACTACACCCATTGCAAC 720
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 CTGGAGGTGTGAAACTCTTTTTCTTTTATTTTCATATATTCATATTTTTCAAGCTATGAC 780
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 AAGACAAAACAACAACAATAGAATCCCTTTTCTTTTTGCTGTATTTCCCATAGAACCACA 840
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 GAATCAGCGGCATGATCATGTATATTAGGGCCAATAACCTCACTTGAAACAACTAGTGAC 900
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 CATTCACCGGTATCTGAAACTCAACAGTTTACCCTATGAGTGATAGGAACAATATACAAA 960
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 ATGCTGAATCAGTACTACAAACTTTTTTTTTTCATGAGTGTAGTCTTATTCTTATAAACT 1020
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 GCATGGTAATCTGAGTGTGGAACCATGAAAACATTCATAGACATGATCACTTAACTGAAC 1080
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 ACTTACTTCTCGGTGACAAGTGAAATGCCATACAGGATTAGTTCATTTTAGCCCTCTCCA 1140
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 TGAGGGTTCTACTTAACATTGTATCTGCAAGGTATTGTAGTCTATTGGACCTTGGTACCC 1200
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 CCATCACTGACTGTCCTGTTTGTAGGCGTGTCTACATTTTTGCATAGCATGTAATGTTTT 1260
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 GTCATTATTGGGGCATCTGAATCTGTATAGTTCATTGATTATAGCATTGGAAGTTTGGAT 1320
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 CCTCATTATATGCAGGATTGCATGTGGTTGTTACTTTACATTCATTTCTCGCAGTTCCTC 1380
consensus_5532#1 ---------------------------ACGAGGGCCCA-ACCTGCTGCACGCAAGAACAG 32
* * * * * **** *
consensus_5532#0 AGGATATTTCTGATTTCTTACTATTCAACATCATATCTTTTTGTGATTTGGATAAGACGA 1440
consensus_5532#1 AGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAG 92
** * * * *** * * **** ***
consensus_5532#0 CAATTGTCTTTTGATGCTTGACTATGATCATTGAGAAAGTAACTAGTATTTGAT-TATTC 1499
consensus_5532#1 GAGGCGAAGCCGGACACGCAGCTGT--TC----------CAGCTCCTCTCCGACCTGCTC 140
* * ** * ** * ** * ** * * ** * **
consensus_5532#0 AAATGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAG 1559
consensus_5532#1 CA--GCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAG 198
* ********************************************************
consensus_5532#0 CACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGGTAA 1619
consensus_5532#1 CACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAG---- 254
********************************************************
consensus_5532#0 CTGCAACAACCTCTGTTTAATCCCCTTTCCGCGAATTTATTTACATTTTCTCATCTCATT 1679
consensus_5532#1 ------------------------------------------------------------
consensus_5532#0 TGTTTTCGTTCAACGCTATCTTTAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGC 1739
consensus_5532#1 -------------------------TTAGAGATCGCAGCAGAGCTGGACAAACTATCAGC 289
***********************************
consensus_5532#0 GAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAA 1799
consensus_5532#1 GAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAA 349
************************************************************
consensus_5532#0 ATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGA 1859
consensus_5532#1 ATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGA 409
************************************************************
consensus_5532#0 AAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAA 1919
consensus_5532#1 AAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAA 469
************************************************************
consensus_5532#0 ACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGT 1979
consensus_5532#1 ACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGT 529
************************************************************
consensus_5532#0 AGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGG 2039
consensus_5532#1 AGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGG 589
************************************************************
consensus_5532#0 TGGCCATTTTGTACATCAATTCTTGAGTCTTCAGTTT 2076
consensus_5532#1 T------------------------------------ 590
*
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||