These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2076 fasta sequence [CCAAGAGCCAGGCAAATCTCGAGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGACACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTACAAGCGCCGCCGCCCTCTCGATCTGTTGTCGATTTCTTGTTTTTGGATTAGGGGTGGTTCATGATTTCGCCGACATGGATCTTCGCTTCGTGCGGATGTTGTTACTTTTGCGGATCTAGTATCACATATCAATCTCGGTTGATACCATTATTTATGTAAACCTAGTTAATTTGTTTTGGGGATAGATGCAACATGGCCTATGGCCTGGGATTCGACCTCAACGACATGGCTGGGAGAGAAGCAAAATAGCAGCATAGTGCATAGGCTCAGAGTTGATGTAGTTAATCTCTTTCTGGTGGATTCCTTGCTTTATGTTACTATGCACTGCGCGCCCTGCTGTGTAATGTTTACGAATCTGAAAGAGTGAAACATGGGCTATTGATTTGGGTCATTGGGTGATTGAAGGTCAATGCCAACTATCAATCTACTGGTGATTGGCTGGGATTGATTCCTTCTCGTTCTAGCAATCAAACAAAATTTCCTATCTAAATCAAGCTGATCTATATCAGCCCCTGTTTCAAAACTCTGAACTCTATCAACTACACCCATTGCAACCTGGAGGTGTGAAACTCTTTTTCTTTTATTTTCATATATTCATATTTTTCAAGCTATGACAAGACAAAACAACAACAATAGAATCCCTTTTCTTTTTGCTGTATTTCCCATAGAACCACAGAATCAGCGGCATGATCATGTATATTAGGGCCAATAACCTCACTTGAAACAACTAGTGACCATTCACCGGTATCTGAAACTCAACAGTTTACCCTATGAGTGATAGGAACAATATACAAAATGCTGAATCAGTACTACAAACTTTTTTTTTTCATGAGTGTAGTCTTATTCTTATAAACTGCATGGTAATCTGAGTGTGGAACCATGAAAACATTCATAGACATGATCACTTAACTGAACACTTACTTCTCGGTGACAAGTGAAATGCCATACAGGATTAGTTCATTTTAGCCCTCTCCATGAGGGTTCTACTTAACATTGTATCTGCAAGGTATTGTAGTCTATTGGACCTTGGTACCCCCATCACTGACTGTCCTGTTTGTAGGCGTGTCTACATTTTTGCATAGCATGTAATGTTTTGTCATTATTGGGGCATCTGAATCTGTATAGTTCATTGATTATAGCATTGGAAGTTTGGATCCTCATTATATGCAGGATTGCATGTGGTTGTTACTTTACATTCATTTCTCGCAGTTCCTCAGGATATTTCTGATTTCTTACTATTCAACATCATATCTTTTTGTGATTTGGATAAGACGACAATTGTCTTTTGATGCTTGACTATGATCATTGAGAAAGTAACTAGTATTTGATTATTCAAATGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGGTAACTGCAACAACCTCTGTTTAATCCCCTTTCCGCGAATTTATTTACATTTTCTCATCTCATTTGTTTTCGTTCAACGCTATCTTTAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGTGGCCATTTTGTACATCAATTCTTGAGTCTTCAGTTT] [+] EMBL AK068354 [CCAAGAGCCAGGCAAATCTCGAGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGACACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTACAAGCGCCGCCGCCCTCTCGATCTGTTGTCGATTTCTTGTTTTTGGATTAGGGGTGGTTCATGATTTCGCCGACATGGATCTTCGCTTCGTGCGGATGTTGTTACTTTTGCGGATCTAGTATCACATATCAATCTCGGTTGATACCATTATTTATGTAAACCTAGTTAATTTGTTTTGGGGATAGATGCAACATGGCCTATGGCCTGGGATTCGACCTCAACGACATGGCTGGGAGAGAAGCAAAATAGCAGCATAGTGCATAGGCTCAGAGTTGATGTAGTTAATCTCTTTCTGGTGGATTCCTTGCTTTATGTTACTATGCACTGCGCGCCCTGCTGTGTAATGTTTACGAATCTGAAAGAGTGAAACATGGGCTATTGATTTGGGTCATTGGGTGATTGAAGGTCAATGCCAACTATCAATCTACTGGTGATTGGCTGGGATTGATTCCTTCTCGTTCTAGCAATCAAACAAAATTTCCTATCTAAATCAAGCTGATCTATATCAGCCCCTGTTTCAAAACTCTGAACTCTATCAACTACACCCATTGCAACCTGGAGGTGTGAAACTCTTTTTCTTTTATTTTCATATATTCATATTTTTCAAGCTATGACAAGACAAAACAACAACAATAGAATCCCTTTTCTTTTTGCTGTATTTCCCATAGAACCACAGAATCAGCGGCATGATCATGTATATTAGGGCCAATAACCTCACTTGAAACAACTAGTGACCATTCACCGGTATCTGAAACTCAACAGTTTACCCTATGAGTGATAGGAACAATATACAAAATGCTGAATCAGTACTACAAACTTTTTTTTTTCATGAGTGTAGTCTTATTCTTATAAACTGCATGGTAATCTGAGTGTGGAACCATGAAAACATTCATAGACATGATCACTTAACTGAACACTTACTTCTCGGTGACAAGTGAAATGCCATACAGGATTAGTTCATTTTAGCCCTCTCCATGAGGGTTCTACTTAACATTGTATCTGCAAGGTATTGTAGTCTATTGGACCTTGGTACCCCCATCACTGACTGTCCTGTTTGTAGGCGTGTCTACATTTTTGCATAGCATGTAATGTTTTGTCATTATTGGGGCATCTGAATCTGTATAGTTCATTGATTATAGCATTGGAAGTTTGGATCCTCATTATATGCAGGATTGCATGTGGTTGTTACTTTACATTCATTTCTCGCAGTTCCTCAGGATATTTCTGATTTCTTACTATTCAACATCATATCTTTTTGTGATTTGGATAAGACGACAATTGTCTTTTGATGCTTGACTATGATCATTGAGAAAGTAACTAGTATTTGATTATTCAAATGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGGTAACTGCAACAACCTCTGTTTAATCCCCTTTCCGCGAATTTATTTACATTTTCTCATCTCATTTGTTTTCGTTCAACGCTATCTTTAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGTGGCCATTTTGTACATCAATTCTTGAGTCTTCAGTTT] consensusID : consensus_5532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 590 fasta sequence [ACGAGGGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGA-CACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGA-TATCTGGATGCCCGTCATCA-CCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAG-CAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTA-TTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGT] [+] EMBL BP184982 [ACGAGGGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCGGA CACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGA TATCTGGATGCCCGTCATCA CCGCCTCTGCCGATGAAAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAG CAGGAGAGTTCCAAACAATAGCCTCCTACATGTACCTTCACATGAGTA TTTCTTGACCATGTATCAACATTTGTAGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGGT] [+] EMBL OSS5089A [ CGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAA NGNANCACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCA GTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAGCACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGCGAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAAATCCCTTTTGAGTACCACTGCTGATTATCTGGGTGCCCGTCATCANCGGCTTTTGCCGGTGNAAGGCGGGGGTTTNCAGGGACAAGTTGTGAAAGCAACCAAGGAGGGCCAGGNGATTTCC AACAATTGGCTCCTACATGTACCTTCACATGGGTATTTTTTTGACCCTGTtcc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5532#0 CCAAGAGCCAGGCAAATCTCGAGCCCAACCTGCTGCACGCAAGAACAGAGAACGAGCAGC 60 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 TTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAGGAGGCGAAGCCG 120 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 GACACGCAGCTGTTCCAGCTCCTCTCCGACCTGCTCCAGCAGGTACAAGCGCCGCCGCCC 180 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 TCTCGATCTGTTGTCGATTTCTTGTTTTTGGATTAGGGGTGGTTCATGATTTCGCCGACA 240 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 TGGATCTTCGCTTCGTGCGGATGTTGTTACTTTTGCGGATCTAGTATCACATATCAATCT 300 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 CGGTTGATACCATTATTTATGTAAACCTAGTTAATTTGTTTTGGGGATAGATGCAACATG 360 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 GCCTATGGCCTGGGATTCGACCTCAACGACATGGCTGGGAGAGAAGCAAAATAGCAGCAT 420 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 AGTGCATAGGCTCAGAGTTGATGTAGTTAATCTCTTTCTGGTGGATTCCTTGCTTTATGT 480 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 TACTATGCACTGCGCGCCCTGCTGTGTAATGTTTACGAATCTGAAAGAGTGAAACATGGG 540 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 CTATTGATTTGGGTCATTGGGTGATTGAAGGTCAATGCCAACTATCAATCTACTGGTGAT 600 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 TGGCTGGGATTGATTCCTTCTCGTTCTAGCAATCAAACAAAATTTCCTATCTAAATCAAG 660 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 CTGATCTATATCAGCCCCTGTTTCAAAACTCTGAACTCTATCAACTACACCCATTGCAAC 720 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 CTGGAGGTGTGAAACTCTTTTTCTTTTATTTTCATATATTCATATTTTTCAAGCTATGAC 780 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 AAGACAAAACAACAACAATAGAATCCCTTTTCTTTTTGCTGTATTTCCCATAGAACCACA 840 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 GAATCAGCGGCATGATCATGTATATTAGGGCCAATAACCTCACTTGAAACAACTAGTGAC 900 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 CATTCACCGGTATCTGAAACTCAACAGTTTACCCTATGAGTGATAGGAACAATATACAAA 960 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 ATGCTGAATCAGTACTACAAACTTTTTTTTTTCATGAGTGTAGTCTTATTCTTATAAACT 1020 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 GCATGGTAATCTGAGTGTGGAACCATGAAAACATTCATAGACATGATCACTTAACTGAAC 1080 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 ACTTACTTCTCGGTGACAAGTGAAATGCCATACAGGATTAGTTCATTTTAGCCCTCTCCA 1140 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 TGAGGGTTCTACTTAACATTGTATCTGCAAGGTATTGTAGTCTATTGGACCTTGGTACCC 1200 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 CCATCACTGACTGTCCTGTTTGTAGGCGTGTCTACATTTTTGCATAGCATGTAATGTTTT 1260 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 GTCATTATTGGGGCATCTGAATCTGTATAGTTCATTGATTATAGCATTGGAAGTTTGGAT 1320 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 CCTCATTATATGCAGGATTGCATGTGGTTGTTACTTTACATTCATTTCTCGCAGTTCCTC 1380 consensus_5532#1 ---------------------------ACGAGGGCCCA-ACCTGCTGCACGCAAGAACAG 32 * * * * * **** * consensus_5532#0 AGGATATTTCTGATTTCTTACTATTCAACATCATATCTTTTTGTGATTTGGATAAGACGA 1440 consensus_5532#1 AGAACGAGCAGCTTCGGCGGGGAAGAGGAATCGAAAGAGAAGGAAATTTTGATGGCGGAG 92 ** * * * *** * * **** *** consensus_5532#0 CAATTGTCTTTTGATGCTTGACTATGATCATTGAGAAAGTAACTAGTATTTGAT-TATTC 1499 consensus_5532#1 GAGGCGAAGCCGGACACGCAGCTGT--TC----------CAGCTCCTCTCCGACCTGCTC 140 * * ** * ** * ** * ** * * ** * ** consensus_5532#0 AAATGCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAG 1559 consensus_5532#1 CA--GCAGGTGGAGTCAATGAGCAACCAGGAAGAAGTAGAATTGCGTGCTAAGATCGAAG 198 * ******************************************************** consensus_5532#0 CACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAGGTAA 1619 consensus_5532#1 CACTAGGACTAGAAGTTACCAAGGTACCAGAGCAGACACCTAAGCAGCTTGATGAG---- 254 ******************************************************** consensus_5532#0 CTGCAACAACCTCTGTTTAATCCCCTTTCCGCGAATTTATTTACATTTTCTCATCTCATT 1679 consensus_5532#1 ------------------------------------------------------------ consensus_5532#0 TGTTTTCGTTCAACGCTATCTTTAGTTAGAGATCGCAGCAGAGCTGGACAAACTATCAGC 1739 consensus_5532#1 -------------------------TTAGAGATCGCAGCAGAGCTGGACAAACTATCAGC 289 *********************************** consensus_5532#0 GAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAA 1799 consensus_5532#1 GAGGCTTGATAATGTTGACAAGATGATATCTTCTGCCATGGCCTCGGATCCAGAGGTGAA 349 ************************************************************ consensus_5532#0 ATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGA 1859 consensus_5532#1 ATCCCTTTTGAGTACCACTGCTGATATCTGGATGCCCGTCATCACCGCCTCTGCCGATGA 409 ************************************************************ consensus_5532#0 AAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAA 1919 consensus_5532#1 AAGGCGGGGATTTGCAGGAACAAGTGGTGAAAGCAACCAAGAAGAGCAGGAGAGTTCCAA 469 ************************************************************ consensus_5532#0 ACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGT 1979 consensus_5532#1 ACAATAGCCTCCTACATGTACCTTCACATGAGTATTTCTTGACCATGTATCAACATTTGT 529 ************************************************************ consensus_5532#0 AGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGG 2039 consensus_5532#1 AGACAAAACAAGCAATAAGCACACATTCATGAGATGGTAAATAAATCTGATAACTTGTGG 589 ************************************************************ consensus_5532#0 TGGCCATTTTGTACATCAATTCTTGAGTCTTCAGTTT 2076 consensus_5532#1 T------------------------------------ 590 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||