These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5551#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1637 fasta sequence [TCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCATGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGCCGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAATCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATATGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAGAATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGTGGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT] [+] EMBL AK066167 [TCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCATGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGCCGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACGACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAATCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAACACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAATGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTGTCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTGGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTATTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTCCAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTGCCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTGTTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTTGTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTCAAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAGAACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTCTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATCGGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGTTATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACCATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATATGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAGAATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGTGGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATA ] [-] EMBL CF303601 [ AGCTCTAGACCATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATATGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAGAATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGTGGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTT] consensusID : consensus_5551#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 256 fasta sequence [GACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGCGCATTGCGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGCATCCTTGCTGGGGTGTTCATGTTACTTAAACATATCTGTATCCTGAAGTTCCGNTGAAAGC] [+] EMBL BE230502 [GACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGGGAAGGTTGATGTAGCAGATGGAACTTGCGCATTGCGAGTTGTGTGATACATGAGGAATTGCATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTCCAAATGCTTGTATGATGCATCCTTGCTGGGGTGTTCATGTTACTTAAACATATCTGTATCCTGAAGTTCCGNTGAAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5551#0 TCTCTCTCTCTCTCTCTCCTCTCTCTCTCTCTCCTCTCTCTCCAATCGAATCGGAATCCA 60 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TGGAGTCGTCGCGGTCGCGGAAGCGGGCCCGCCAGGACTGGGACGGCGCCGGCGCGCCGC 120 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 CGCCGCCGGCGGAGCGGGCGGTGGTGGCGAGGGGCGGCGCGTCGCCGCCGTGGAGGGACG 180 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 ACGACCGCGACGGGCACTACGTGTTCGACCTCGGCGAGAACTTGAACCGACGATACAAAA 240 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TCTTGAGCAAAATGGGAGAAGGTACTTTTGGGCGTGTTTTGGAATGCTGGGACCGTGAAA 300 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 CACATGAATATGTCGCAATAAAAGTTGTTCGTAGCATCCGCAAGTACAGGGATGCTGCAA 360 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TGATTGAGATCGATGTGCTCAACCGCCTTGCAGAAAATGAGAGATACAGATCACTCTGTG 420 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TCCAGATTCAAGGATGGTTTGACTATCGCAATCATATATGCATTGTTTTTGAGAAGCTTG 480 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 GGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTG 540 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATATATGCATGAATTACGCCTTA 600 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TTCACACTGATCTGAAGCCAGAAAACATACTCCTTGTGTCTTCGGAGTATATAAGGGTTC 660 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 CAGGTTCCAAGAAGAATTCACAAGATGAGATGCATTTCAAGTGCTTACCAAAGTCCAGTG 720 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 CCATAAAGCTGATAGATTTTGGTAGTACCGCCTTTGATAATCAGGAACATAGCTCGATTG 780 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TTTCTACAAGGCATTACAGAGCACCTGAAATAATCTTAGGCTTAGGGTGGAGTTTCCCTT 840 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 GTGACCTTTGGAGTGTCGGATGCATCATTGTTGAGCTATGCTCGGGGGAAGCATTGTTTC 900 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 AAACACATGAGAACCTTGAGCACTTAGCAATGATGGAGAGGGTTTTGGGTCCACTCCCAG 960 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 AACACATGATAAGGAAAGCCAGTTCATCAGCTCAGAAATATTTTAGACGAGGAGCGCGTC 1020 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TAAATTGGCCTGAAGGTGCTGTTTCAAGAGAGAGTATCAGAGCAGTCAAAAAACTAGATC 1080 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 GGCTAAAGGACTTAGTGGCGAGGAAGGCTGATCATTCAAGGGCGGTGCTGGCAGACTTGT 1140 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TATATGGGCTTTTAAAATTTGAGCCATCAGAGCGTCTTACTGCCCAAGAAGCTCTAGACC 1200 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 ATCCATTTTTCAGAAATACAACATGAGTACATGATCATGCTGACTCTACCCCTCCCAATA 1260 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 TGTACGTGAAGAACCCAAGCCTGGAGAAAGCAGGCGCAAGGACATTCCCATATAAAGCAG 1320 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 AATGCCTTCAGCTCATCTGTACCATAAATCTTCTGTAAGCTGAGCTATAATGCTTGTGGT 1380 consensus_5551#1 ------------------------------------------------------------ consensus_5551#0 GGTGACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGG 1440 consensus_5551#1 ---GACACGGCATAACTGTTACGTTCACCCGATGTAATGTACAATAGCATTGAATCTAGG 57 ********************************************************* consensus_5551#0 GAAGGTTGATGTAGCAGATGGAACTTGTGCATTGTGAGTTGTGTGATACATGAGGAATTG 1500 consensus_5551#1 GAAGGTTGATGTAGCAGATGGAACTTGCGCATTGCGAGTTGTGTGATACATGAGGAATTG 117 *************************** ****** ************************* consensus_5551#0 CATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTC 1560 consensus_5551#1 CATTGCGACTCATGTCGCAGTGACACAACAATGACCAAAGCAGGCCATATATGCCCCTTC 177 ************************************************************ consensus_5551#0 CAAATGCTTGTATGATGTATCCTTGCTGGGGTGTTCATGTTACTTAAAAAAAAAAAAAA- 1619 consensus_5551#1 CAAATGCTTGTATGATGCATCCTTGCTGGGGTGTTCATGTTACTTAAACATATCTGTATC 237 ***************** ****************************** * * * consensus_5551#0 --AAAAACTCGAGACTAGTT 1637 consensus_5551#1 CTGAAGTTCCGNTGAAAGC- 256 ** ** ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||