These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [ATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCAAAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAAAACTTTCAATGAATAAATAAATAATCAATTATATCATCNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA756410 [ATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCAAAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAAAACTTTCAATGAATAAATAAATAATCAATTATATCATCNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_5552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [TCAAAATGCCAAACATTAAATCACAAGAACACTCAAATTCTGAACATTTAACCAAATCTGGTGAACCAGATCATCGTTACAAAGAAAATCGTGATGATTCGAATTCTGAACAGATGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTGATGATTCAAGTTCTGAACATATGACCAAATCAGGCGAACCAGATCATCGTTACAAAGAAAATCATGATGATTCAAACTCTGAACATACGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCANAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAANACTTTCAATGAATAAATAAATAATCAATTATATCATCATAGAAGGNAAGGAGAAAGGAGAGAGNGGGTGTGGGNGAGGTGTAGAGAG] [+] EMBL CA755515 [TCAAAATGCCAAACATTAAATCACAAGAACACTCAAATTCTGAACATTTAACCAAATCTGGTGAACCAGATCATCGTTACAAAGAAAATCGTGATGATTCGAATTCTGAACAGATGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTGATGATTCAAGTTCTGAACATATGACCAAATCAGGCGAACCAGATCATCGTTACAAAGAAAATCATGATGATTCAAACTCTGAACATACGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCANAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAANACTTTCAATGAATAAATAAATAATCAATTATATCATCATAGAAGGNAAGGAGAAAGGAGAGAGNGGGTGTGGGNGAGGTGTAGAGAG] consensusID : consensus_5552#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [CGGCATGCGTCATCATGAAGAACATCTTACTAAAGATGGTCAACCAGATCATCGTTACCAAGGAAAATCGTTCCGATAATAATTCCACGATGATCAACAATCAAATGATCGACATCGAATGGTCGTCAATCAAATAATCAACAATCAAATGATCGTCAATCAAAGAATCACAAGATGGCAAGATGATTCAACAGACTTAGCCGATATTCCAATCAAGGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGCAGAGAAGCTGTTGCATCTGGTCTCATTGAAAAGGATGAAGTTATCGAAGAAGCTATGAATGGTGAACATCATGGTCAACAACATCAAAGTGATCATCTTAAAAAAGATGGTACCGAAGATCGACGAT] [+] EMBL BI804569 [CGGCATGCGTCATCATGAAGAACATCTTACTAAAGATGGTCAACCAGATCATCGTTACCAAGGAAAATCGTTCCGATAATAATTCCACGATGATCAACAATCAAATGATCGACATCGAATGGTCGTCAATCAAATAATCAACAATCAAATGATCGTCAATCAAAGAATCACAAGATGGCAAGATGATTCAACAGACTTAGCCGATATTCCAATCAAGGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGCAGAGAAGCTGTTGCATCTGGTCTCATTGAAAAGGATGAAGTTATCGAAGAAGCTATGAATGGTGAACATCATGGTCAACAACATCAAAGTGATCATCTTAAAAAAGATGGTACCGAAGATCGACGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5552#1 ------------------------------------------------------------ consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 ATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGG 60 consensus_5552#1 ------------------TCAAAATGCCAAACATTAAATCACAAGAACACTCAAATTCTG 42 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 CTGATATTCATATCAAAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAG 120 consensus_5552#1 AACATTTAACCAAATCTGGTGAACCAGATCATCGTTACAAAGAAAATCGTGATGATTCGA 102 consensus_5552#2 -----------------------------------------------CGGCATGCGTCAT 13 consensus_5552#0 CTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAAT 180 *** * consensus_5552#1 ---ATTCTGAACAGATGAATAAATCAGGTGAACAAGATCATCGTCAC-AAGGAAAATCGT 158 consensus_5552#2 C--ATGAAGAACATCTTACTAAAGATGGTCAACCAGATCATCGTTACCAAGGAAAATCGT 71 consensus_5552#0 CCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTAT 240 ** ** * * * * * * *** ** * * * * * consensus_5552#1 GATGATTCAAGTTCTGA-------ACATATGACCAAATCAGGCGAACCAGATCATCGTTA 211 consensus_5552#2 TCCGATAATAATTCCAC-------G---ATGATCAAC-------AATCAAATGATCGACA 114 consensus_5552#0 TAATATAAAACTTTCAATGAATAAATAAATAATCAATTATATCATCNTNNNNNNNNNNNN 300 ** * ** ** * *** consensus_5552#1 CAAAGAAAATCATGATGATTCAAACTCTGAACATACGAATAAATCAGGTGAACAAGATCA 271 consensus_5552#2 TCGA----ATGGTCGTCAATCAAATAATCAACA---------ATCAAATGA--------- 152 consensus_5552#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 360 consensus_5552#1 TCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGA 331 consensus_5552#2 TCGTCAATCAAAGAATCACAAGA--TGGCAAGATGAT--TCA----ACAGACTTAGCCGA 204 consensus_5552#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 420 consensus_5552#1 TATTCATATCANAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGT 391 consensus_5552#2 TATTCCAATCAAGGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGCAGAGAAGCTGT 264 consensus_5552#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 480 consensus_5552#1 TGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGA 451 consensus_5552#2 TGCATCTGGTCTCATTGAAAAGGATGAAGTTATCGAAGAAGCTATGAATGGTGAACATCA 324 consensus_5552#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 540 consensus_5552#1 TGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAAT 511 consensus_5552#2 TGGTCAACAAC--ATCAAAGTGATCATCTTAAAAAAGATGGTACCGA-AGATCGACGAT- 380 consensus_5552#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 600 consensus_5552#1 ATAANACTTTCAATGAATAAATAAATAATCAATTATATCATCATAGAAGGNAAGGAGAAA 571 consensus_5552#2 ------------------------------------------------------------ consensus_5552#0 NNN--------------------------------------------------------- 603 consensus_5552#1 GGAGAGAGNGGGTGTGGGNGAGGTGTAGAGAG 603 consensus_5552#2 -------------------------------- consensus_5552#0 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||