cluster # 5552

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Oryza sativa
cluster # 5552 cluster # 5552 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5552#0 length = 603 sequences # 1

consensus_5552#1 length = 603 sequences # 1
consensus_5552#2 length = 380 sequences # 1

consensusID : consensus_5552#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [ATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCAAAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAAAACTTTCAATGAATAAATAAATAATCAATTATATCATCNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL CA756410             [ATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCAAAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAAAACTTTCAATGAATAAATAAATAATCAATTATATCATCNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]




>consensus_5552#0
ATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGG
CTGATATTCATATCAAAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAG
CTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAAT
CCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTAT
TAATATAAAACTTTCAATGAATAAATAAATAATCAATTATATCATCNTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN

consensusID : consensus_5552#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [TCAAAATGCCAAACATTAAATCACAAGAACACTCAAATTCTGAACATTTAACCAAATCTGGTGAACCAGATCATCGTTACAAAGAAAATCGTGATGATTCGAATTCTGAACAGATGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTGATGATTCAAGTTCTGAACATATGACCAAATCAGGCGAACCAGATCATCGTTACAAAGAAAATCATGATGATTCAAACTCTGAACATACGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCANAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAANACTTTCAATGAATAAATAAATAATCAATTATATCATCATAGAAGGNAAGGAGAAAGGAGAGAGNGGGTGTGGGNGAGGTGTAGAGAG]

[+] EMBL CA755515             [TCAAAATGCCAAACATTAAATCACAAGAACACTCAAATTCTGAACATTTAACCAAATCTGGTGAACCAGATCATCGTTACAAAGAAAATCGTGATGATTCGAATTCTGAACAGATGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTGATGATTCAAGTTCTGAACATATGACCAAATCAGGCGAACCAGATCATCGTTACAAAGAAAATCATGATGATTCAAACTCTGAACATACGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGATATTCATATCANAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAATATAANACTTTCAATGAATAAATAAATAATCAATTATATCATCATAGAAGGNAAGGAGAAAGGAGAGAGNGGGTGTGGGNGAGGTGTAGAGAG]




>consensus_5552#1
TCAAAATGCCAAACATTAAATCACAAGAACACTCAAATTCTGAACATTTAACCAAATCTG
GTGAACCAGATCATCGTTACAAAGAAAATCGTGATGATTCGAATTCTGAACAGATGAATA
AATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTGATGATTCAAGTTCTGAACATA
TGACCAAATCAGGCGAACCAGATCATCGTTACAAAGAAAATCATGATGATTCAAACTCTG
AACATACGAATAAATCAGGTGAACAAGATCATCGTCACAAGGAAAATCGTAATGATTCGC
AAAATGAACATCATGATATTGATTTGGCTGATATTCATATCANAGCTGATGGAACAGCTG
ATATGCGTTATAAAGAAAGTCGAGAAGCTGTTGCTCAAGGTCTCATCTCGCCAGATGAAG
TCGTTGAAGAAGCTATGAATGAATAATCCGATGAACAAATATTTATTCACGCTATTTTTC
CTTATCTTCTCTTTTCAATATATTTATTAATATAANACTTTCAATGAATAAATAAATAAT
CAATTATATCATCATAGAAGGNAAGGAGAAAGGAGAGAGNGGGTGTGGGNGAGGTGTAGA
GAG

consensusID : consensus_5552#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [CGGCATGCGTCATCATGAAGAACATCTTACTAAAGATGGTCAACCAGATCATCGTTACCAAGGAAAATCGTTCCGATAATAATTCCACGATGATCAACAATCAAATGATCGACATCGAATGGTCGTCAATCAAATAATCAACAATCAAATGATCGTCAATCAAAGAATCACAAGATGGCAAGATGATTCAACAGACTTAGCCGATATTCCAATCAAGGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGCAGAGAAGCTGTTGCATCTGGTCTCATTGAAAAGGATGAAGTTATCGAAGAAGCTATGAATGGTGAACATCATGGTCAACAACATCAAAGTGATCATCTTAAAAAAGATGGTACCGAAGATCGACGAT]

[+] EMBL BI804569             [CGGCATGCGTCATCATGAAGAACATCTTACTAAAGATGGTCAACCAGATCATCGTTACCAAGGAAAATCGTTCCGATAATAATTCCACGATGATCAACAATCAAATGATCGACATCGAATGGTCGTCAATCAAATAATCAACAATCAAATGATCGTCAATCAAAGAATCACAAGATGGCAAGATGATTCAACAGACTTAGCCGATATTCCAATCAAGGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGCAGAGAAGCTGTTGCATCTGGTCTCATTGAAAAGGATGAAGTTATCGAAGAAGCTATGAATGGTGAACATCATGGTCAACAACATCAAAGTGATCATCTTAAAAAAGATGGTACCGAAGATCGACGAT]




>consensus_5552#2
CGGCATGCGTCATCATGAAGAACATCTTACTAAAGATGGTCAACCAGATCATCGTTACCA
AGGAAAATCGTTCCGATAATAATTCCACGATGATCAACAATCAAATGATCGACATCGAAT
GGTCGTCAATCAAATAATCAACAATCAAATGATCGTCAATCAAAGAATCACAAGATGGCA
AGATGATTCAACAGACTTAGCCGATATTCCAATCAAGGCTGATGGAACAGCTGATATGCG
TTATAAAGAAAGCAGAGAAGCTGTTGCATCTGGTCTCATTGAAAAGGATGAAGTTATCGA
AGAAGCTATGAATGGTGAACATCATGGTCAACAACATCAAAGTGATCATCTTAAAAAAGA
TGGTACCGAAGATCGACGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5552#1      ------------------------------------------------------------
consensus_5552#2      ------------------------------------------------------------
consensus_5552#0      ATCATCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGG 60
                                                                                  

consensus_5552#1      ------------------TCAAAATGCCAAACATTAAATCACAAGAACACTCAAATTCTG 42
consensus_5552#2      ------------------------------------------------------------
consensus_5552#0      CTGATATTCATATCAAAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAG 120
                                                                                  

consensus_5552#1      AACATTTAACCAAATCTGGTGAACCAGATCATCGTTACAAAGAAAATCGTGATGATTCGA 102
consensus_5552#2      -----------------------------------------------CGGCATGCGTCAT 13
consensus_5552#0      CTGTTGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAAT 180
                                                                         ***  *   

consensus_5552#1      ---ATTCTGAACAGATGAATAAATCAGGTGAACAAGATCATCGTCAC-AAGGAAAATCGT 158
consensus_5552#2      C--ATGAAGAACATCTTACTAAAGATGGTCAACCAGATCATCGTTACCAAGGAAAATCGT 71
consensus_5552#0      CCGATGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTAT 240
                         **    **    * * * *      *   *   *** **       *  * * *  *

consensus_5552#1      GATGATTCAAGTTCTGA-------ACATATGACCAAATCAGGCGAACCAGATCATCGTTA 211
consensus_5552#2      TCCGATAATAATTCCAC-------G---ATGATCAAC-------AATCAAATGATCGACA 114
consensus_5552#0      TAATATAAAACTTTCAATGAATAAATAAATAATCAATTATATCATCNTNNNNNNNNNNNN 300
                          **   * **               ** * ***                        

consensus_5552#1      CAAAGAAAATCATGATGATTCAAACTCTGAACATACGAATAAATCAGGTGAACAAGATCA 271
consensus_5552#2      TCGA----ATGGTCGTCAATCAAATAATCAACA---------ATCAAATGA--------- 152
consensus_5552#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 360
                                                                                  

consensus_5552#1      TCGTCACAAGGAAAATCGTAATGATTCGCAAAATGAACATCATGATATTGATTTGGCTGA 331
consensus_5552#2      TCGTCAATCAAAGAATCACAAGA--TGGCAAGATGAT--TCA----ACAGACTTAGCCGA 204
consensus_5552#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 420
                                                                                  

consensus_5552#1      TATTCATATCANAGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGTCGAGAAGCTGT 391
consensus_5552#2      TATTCCAATCAAGGCTGATGGAACAGCTGATATGCGTTATAAAGAAAGCAGAGAAGCTGT 264
consensus_5552#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 480
                                                                                  

consensus_5552#1      TGCTCAAGGTCTCATCTCGCCAGATGAAGTCGTTGAAGAAGCTATGAATGAATAATCCGA 451
consensus_5552#2      TGCATCTGGTCTCATTGAAAAGGATGAAGTTATCGAAGAAGCTATGAATGGTGAACATCA 324
consensus_5552#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 540
                                                                                  

consensus_5552#1      TGAACAAATATTTATTCACGCTATTTTTCCTTATCTTCTCTTTTCAATATATTTATTAAT 511
consensus_5552#2      TGGTCAACAAC--ATCAAAGTGATCATCTTAAAAAAGATGGTACCGA-AGATCGACGAT- 380
consensus_5552#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 600
                                                                                  

consensus_5552#1      ATAANACTTTCAATGAATAAATAAATAATCAATTATATCATCATAGAAGGNAAGGAGAAA 571
consensus_5552#2      ------------------------------------------------------------
consensus_5552#0      NNN--------------------------------------------------------- 603
                                                                                  

consensus_5552#1      GGAGAGAGNGGGTGTGGGNGAGGTGTAGAGAG 603
consensus_5552#2      --------------------------------
consensus_5552#0      --------------------------------