cluster # 5555

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Oryza sativa
cluster # 5555 cluster # 5555 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5555#0 length = 367 sequences # 1

consensus_5555#1 length = 285 sequences # 2

consensusID : consensus_5555#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence

                              [CACTGACATGGCACTGCAAGACTACAAAGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCATTCATGTTGATCCATGTATGGATGTAAGGTTTACATTCAAAAAAAAAAAACAAACACTACCCAACAAAAAACTATATCCCTAACCTAAATCTACATACCCTTCTCCAAAAACCGACGCCTCCCGGCTATCTTCCCAACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAACTAATGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGCCAATCCCAATTACACCATGTCATTTCTACTCCTTCACTCCATGTC]

[+] EMBL CF327788             [CACTGACATGGCACTGCAAGACTACAAAGGTTGTACTATGAGATGTGTACGTGTGTTGTCGGTTTCATTCATGTTGATCCATGTATGGATGTAAGGTTTACATTCAAAAAAAAAAAACAAACACTACCCAACAAAAAACTATATCCCTAACCTAAATCTACATACCCTTCTCCAAAAACCGACGCCTCCCGGCTATCTTCCCAACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAACTAATGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGCCAATCCCAATTACACCATGTCATTTCTACTCCTTCACTCCATGTC]




>consensus_5555#0
CACTGACATGGCACTGCAAGACTACAAAGGTTGTACTATGAGATGTGTACGTGTGTTGTC
GGTTTCATTCATGTTGATCCATGTATGGATGTAAGGTTTACATTCAAAAAAAAAAAACAA
ACACTACCCAACAAAAAACTATATCCCTAACCTAAATCTACATACCCTTCTCCAAAAACC
GACGCCTCCCGGCTATCTTCCCAACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACAC
TGATGACCTAAATTTCACACTGTTAAACTAATGGGGCTTCCTGATCCTCTTTAATCTGCA
CTCAGATTCCAACATTACACGCCAATCCCAATTACACCATGTCATTTCTACTCCTTCACT
CCATGTC

consensusID : consensus_5555#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 285
fasta sequence

                              [TTTTTTTCTCTATATAAGGGAAGTATTGTATTCATCTCAAGTGAAGCAATGAATATCAATTAGTCTAATGTCTCCCTCCCAACAGTGTTCTTCTCCCTAGCCTAAATCTACATCCCTTCTCCAGGAGCCGACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGGCAATCCCAGTTAGA]

[+] EMBL CF327697             [TTTTTTTCTCTATATAAGGGAAGTATTGTATTCATCTCAAGTGAAGCAATGAATATCAATTAGTCTAATGTCTCCCTCCCAACAGTGTTCTTCTCCCTAGCCTAAATCTACATCCCTTCTCCAGGAGCCGACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGGCAATCCCAGTTAG ]
[-] EMBL CF327696             [ TTTTTTCTCTATATAAGGGAAGTATTGTATTCATCTCAAGTGAAGCAATGAATATCAATTAGTCTAATGTCTCCCTCCCAACAGTGTTCTTCTCCCTAGCCTAAATCTACATCCCTTCTCCAGGAGCCGACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACACTGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCACTCAGATTCCAACATTACACGGCAATCCCAGTTAGA]




>consensus_5555#1
TTTTTTTCTCTATATAAGGGAAGTATTGTATTCATCTCAAGTGAAGCAATGAATATCAAT
TAGTCTAATGTCTCCCTCCCAACAGTGTTCTTCTCCCTAGCCTAAATCTACATCCCTTCT
CCAGGAGCCGACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGG
TCATGACACTGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTT
TAATCTGCACTCAGATTCCAACATTACACGGCAATCCCAGTTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5555#0      CACTGACATGGCACTGCAAGACTACAAAGGTTGTACTATGAGATGTGTACGTGTGTTGTC 60
consensus_5555#1      ---------------------------------TTTTTTTCTCTATATAAGGGAAGTATT 27
                                                       *  * *    * * ** * *   * * 

consensus_5555#0      GGTTTCATTCATGTTGATCCATGTATGGATGTAAGGTTTACATTCAAAAAAAAAAAACAA 120
consensus_5555#1      GTATTCATCTCAAGTGAAGCA---ATGAATATCAA--TTAGTCT-----------AATGT 71
                      *  *****      ***  **   *** ** * *   ***   *           **   

consensus_5555#0      ACACTACCCAACAAAAAACTATATCCCTAACCTAAATCTACATACCCTTCTCCAAAAACC 180
consensus_5555#1      CTCCCTCCCAACAGTGTTCT-TCTCCCTAGCCTAAATCTACAT-CCCTTCTCCAGGAGCC 129
                         *  *******     ** * ****** ************* **********  * **

consensus_5555#0      GACGCCTCCCGGCTATCTTCCCAACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACAC 240
consensus_5555#1      GACGCCGCCCGGCTATCTTCCCGACGGTGTTTATCCTGTCATGGCCTCGGGTCATGACAC 189
                      ****** *************** *************************************

consensus_5555#0      TGATGACCTAAATTTCACACTGTTAAACTAATGGGGCTTCCTGATCCTCTTTAATCTGCA 300
consensus_5555#1      TGATGACCTAAATTTCACACTGTTAAAGTAAGGGGGCTTCCTGATCCTCTTTAATCTGCA 249
                      *************************** *** ****************************

consensus_5555#0      CTCAGATTCCAACATTACACGCCAATCCCAATTACACCATGTCATTTCTACTCCTTCACT 360
consensus_5555#1      CTCAGATTCCAACATTACACGGCAATCCCAGTTAGA------------------------ 285
                      ********************* ******** *** *                        

consensus_5555#0      CCATGTC 367
consensus_5555#1      -------