cluster # 5557

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Oryza sativa
cluster # 5557 cluster # 5557 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5557#0 length = 772 sequences # 2

consensus_5557#1 length = 118 sequences # 1

consensusID : consensus_5557#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence

                              [CACCTCCCAAACCCCTCAACCCTCGCCGCCGCCGCCGCCGCCGCCGCTCGTCGCTCTGCTCCGCCGCAGCCATGGGGAAGTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGAGTATCCATGCTCAGGACGATGGTGTCGCAGCTCGTGAAGCACGAGCGAATCGAGACCACCGTCGCCAAGGCGAAGGAGGTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGGAAAGAGGGCACATTGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGAGTTCGTTGATAGGGAAAATGAACTTCGAGAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATCCCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGCGAGGGCTCTAGAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATTTTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATATATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAAGCCTGATGCCCTCATGAGATGTGTATCATGTATGACTGCAAATCATTCATT-GAGATATGAAATGCAN]

[+] EMBL AK064685             [CACCTCCCAAACCCCTCAACCCTCGCCGCCGCCGCCGCCGCCGCCGCTCGTCGCTCTGCTCCGCCGCAGCCATGGGGAAGTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGAGTATCCATGCTCAGGACGATGGTGTCGCAGCTCGTGAAGCACGAGCGAATCGAGACCACCGTCGCCAAGGCGAAGGAGGTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGGAAAGAGGGCACATTGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGAACCGAGCTGGTGGGTACACCAGACTATTGCGAACTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGAGTTCGTTGATAGGGAAAATGAACTTCGAGAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATCCCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGCGAGGGCTCTAGAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATTTTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATATATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAAGCCTGATGCCCTCATGAGATGTGTATCATGTATGACTGCAAATCATTCATT GAGATATGAAATGC  ]
[+] EMBL AA751676             [                                                                                                                                                                                                                                                                                                                                                                                                                              cacgagATGAACTTCGANAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATCCCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGNGAGGGCTCTAGAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATTTTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATATATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAANCCTGATGCCCTCATGANATGTGTATCATGTTTGACTGCAAATCATTCATTGGANATATGAAATGCAN]




>consensus_5557#0
CACCTCCCAAACCCCTCAACCCTCGCCGCCGCCGCCGCCGCCGCCGCTCGTCGCTCTGCT
CCGCCGCAGCCATGGGGAAGTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGAGTATCCA
TGCTCAGGACGATGGTGTCGCAGCTCGTGAAGCACGAGCGAATCGAGACCACCGTCGCCA
AGGCGAAGGAGGTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGGAAAGAGGGCACAT
TGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTAT
TTACAGAGCTAGCCTACCGTTACAAGAACCGAGCTGGTGGGTACACCAGACTATTGCGAA
CTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGAGTTCGTTGATAGGGAAA
ATGAACTTCGAGAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATC
CCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGCGAGGGCTCTA
GAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATT
TTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATAT
ATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAAGCCTGATGCCCTCAT
GAGATGTGTATCATGTATGACTGCAAATCATTCATTGAGATATGAAATGCAN

consensusID : consensus_5557#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 118
fasta sequence

                              [CAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGTAAAACTCCTTCATGTGTTGTGTATCAATTTGATTTGTTTC]

[+] EMBL CF305936             [CAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGCTAGCCTACCGTTACAAGTAAAACTCCTTCATGTGTTGTGTATCAATTTGATTTGTTTC]




>consensus_5557#1
CAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTATTTACAGAGC
TAGCCTACCGTTACAAGTAAAACTCCTTCATGTGTTGTGTATCAATTTGATTTGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5557#0      CACCTCCCAAACCCCTCAACCCTCGCCGCCGCCGCCGCCGCCGCCGCTCGTCGCTCTGCT 60
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      CCGCCGCAGCCATGGGGAAGTTCCGCAAGCTCGGCCGCCACGCCGCCCACCGAGTATCCA 120
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      TGCTCAGGACGATGGTGTCGCAGCTCGTGAAGCACGAGCGAATCGAGACCACCGTCGCCA 180
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      AGGCGAAGGAGGTGCGGCGCAAGGCGGATCAGATGGTGCAGCTCGGGAAAGAGGGCACAT 240
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      TGGATGCAGCAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTAT 300
consensus_5557#1      ---------CAAGACGTGCTTCTGCTTTTGTTCGGGGAGATGATGTTGTTCATAAGCTAT 51
                               ***************************************************

consensus_5557#0      TTACAGAGCTAGCCTACCGTTACAAGAACCGAGCTGGTGGGTACACCAGACTATTGCGAA 360
consensus_5557#1      TTACAGAGCTAGCCTACCGTTACAAGTAAAACTCCTTCATGTGTTGTGTATCAATTTGAT 111
                      ************************** *     *      **       *  * *  ** 

consensus_5557#0      CTAGGATACGAGTTGGTGATGCTGCACCGATGGCATACATTGAGTTCGTTGATAGGGAAA 420
consensus_5557#1      TTGTTTC----------------------------------------------------- 118
                       *                                                          

consensus_5557#0      ATGAACTTCGAGAAGCCAAACCTGCAACACCACAGCCACCTCAACGGTCTCCTCTTGATC 480
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      CCTGGGCCAAGTCTCGTGCTAGCCAACAGTGGGCGGGACCTAAAATCAGCGAGGGCTCTA 540
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      GAAAAGAAGGCTTATGAAAATAATATTCATGTGTTGAGTTCCTTGAGACTGTATTCAATT 600
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      TTCTGTACTAGGCTATGAGGCACCAGCTTGTCATTTTGGAGGAGTTTTGTCACGAGATAT 660
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      ATTGTCAATAGAATAATTTGAACTTGGCTGCTTACTTTTAACAAAGCCTGATGCCCTCAT 720
consensus_5557#1      ------------------------------------------------------------
                                                                                  

consensus_5557#0      GAGATGTGTATCATGTATGACTGCAAATCATTCATTGAGATATGAAATGCAN 772
consensus_5557#1      ----------------------------------------------------