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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1732 fasta sequence
[TGCATCTCTGACTATATATACACATACATGTAGCATCCTGCTCCATCTTAACTAGCTACTACTAGTGATGAGCAGAATCAACCTCATGCAGTAATATGCTGTGCTGATCGAATTAATTTACACATATATAGATAGATAGATAGATAGATCGTTCGACCAATCGAGCTAGCTTGAGCAAACTGATTGACCTGGTGAAGTGGTATAATTAACGAGCAGATCATGGAGGATTGCAGCAGCTGGATCCATGGCTACGCCAACGCTAACGCCACCGCCGGCAACAACGGCTTCATGTGCGGCTACGCTGCCAGCTGCAGCCCAGTAGAGTTTCAGCAGCAGCAACAGCTGGTCGGCTCGCAGATTGAGCACCACCTCAACCAGATCAGCATGCAGATGGGGATGGATGACGAGTCGGCGGTGTACGACGGCGCCTCCATGGTGGACGTCCTCCTCATGGCTTCCTCGTCGCCGCACCACCACGCCGGCGCCGGCAGCTTCCAGTACTCCTCGCCGACGTCCTCCTCCGCCTCCTTCCGCTCCGCCTCCGTCTCGTGCAGCCCTGAGAGCTCGGCGGCGGCGACGACGCACTTCCTCGGACCGCCGGCGCCGTCCGCGGCGGCGGCGGGGTTCCATTACCCGGAGGTCTCCTCGCAGGCGCCGTTGCCACTACCCTTGCCGCCCTACGAGCCGCAGCACGGCCAATACACCACCGTCCTCTCGCCGCCGCCGCCGGCGCCAGAGTTGCCGGCGACTACTACGCCGGCGACCGGCGGCGCGTTCAGGCGGTACGCGCGGCACCTCCGCCCGAGGAGGCTGCCCAAGCCGGGAGGGTGCGGGCAGAGGATGTTCAAGACGGCCATGTCGGTGCTCACCAAGATGCACGTGGCGGCGACGTACAACCGCCAGTACTACTACCAGCAGGCGGCAGCCGCCGCCGCGTCGGCGTCGGCGGCCGAGGCGCCGCCGTCCGGCAACCAGCTGCAGCACATGATCTCGGAGCGGAAGCGGCGGGAGAAGCTCAACGACAGCTTCCTCGCCCTCAAGGCCGTCCTCCCTCCCGGCTCTAAGAAAGACAAGACATCGATACTGATCAGAGCAAGAGAGTACGTAAAATCTCTCGAGTCAAAGCTGTCAGAGCTGGAGGAGAAGAACCGGGAGCTAGAGGCGAGGCTAGCCAGCCGCC---CCGCCGCCGCCGCCAAGAACGACAAAGGCGAGACGGCGGCGGCGCCAGCGCCGGAAGCCGGCGATGAGACGAAGCGAAAGGACCTAGTAGAGATCGAGGTGACGACGAGCGGCGGCGGCGCCGGAGCGGCGGATGCGGCGGCGGCGGCGGGAGGAGATCAAGAGACCTGCACGCTCAACGTAGACTTGCGCGGCGGCGGAGGCGGCGGAGGCATGAGCACGACGGACGTTGTGCTCCGGACGCTGCAGTGCCTGAGAGAGCAGATCGGCGACGGCGCCAGCCTCGTGGCGATGAGCACCAGCGCCGGCTCCGGCGGCCGCCCGCCTCGTGCAAACCTAACATTACAGCTCAAGGTGTAATTAATTAATAAAAAAGCATTCTACTAAAGAAGTTAAAGGAAAAATCTGTCTCACATCTCAGTGATCAGAAAAAAAAAAGAAGAAAAAGGGAGGTGCCATCAGTGCAAAATAGCATGCATGCATGCAAGCACATTGTTGACAGCATGATTGTACATTTTTCTCTCTTAAGATAATGGAAAACCTTACACATATT]
[+] EMBL AK102964 [TGCATCTCTGACTATATATACACATACATGTAGCATCCTGCTCCATCTTAACTAGCTACTACTAGTGATGAGCAGAATCAACCTCATGCAGTAATATGCTGTGCTGATCGAATTAATTTACACATATATAGATAGATAGATAGATAGATCGTTCGACCAATCGAGCTAGCTTGAGCAAACTGATTGACCTGGTGAAGTGGTATAATTAACGAGCAGATCATGGAGGATTGCAGCAGCTGGATCCATGGCTACGCCAACGCTAACGCCACCGCCGGCAACAACGGCTTCATGTGCGGCTACGCTGCCAGCTGCAGCCCAGTAGAGTTTCAGCAGCAGCAACAGCTGGTCGGCTCGCAGATTGAGCACCACCTCAACCAGATCAGCATGCAGATGGGGATGGATGACGAGTCGGCGGTGTACGACGGCGCCTCCATGGTGGACGTCCTCCTCATGGCTTCCTCGTCGCCGCACCACCACGCCGGCGCCGGCAGCTTCCAGTACTCCTCGCCGACGTCCTCCTCCGCCTCCTTCCGCTCCGCCTCCGTCTCGTGCAGCCCTGAGAGCTCGGCGGCGGCGACGACGCACTTCCTCGGACCGCCGGCGCCGTCCGCGGCGGCGGCGGGGTTCCATTACCCGGAGGTCTCCTCGCAGGCGCCGTTGCCACTACCCTTGCCGCCCTACGAGCCGCAGCACGGCCAATACACCACCGTCCTCTCGCCGCCGCCGCCGGCGCCAGAGTTGCCGGCGACTACTACGCCGGCGACCGGCGGCGCGTTCAGGCGGTACGCGCGGCACCTCCGCCCGAGGAGGCTGCCCAAGCCGGGAGGGTGCGGGCAGAGGATGTTCAAGACGGCCATGTCGGTGCTCACCAAGATGCACGTGGCGGCGACGTACAACCGCCAGTACTACTACCAGCAGGCGGCAGCCGCCGCCGCGTCGGCGTCGGCGGCCGAGGCGCCGCCGTCCGGCAACCAGCTGCAGCACATGATCTCGGAGCGGAAGCGGCGGGAGAAGCTCAACGACAGCTTCCTCGCCCTCAAGGCCGTCCTCCCTCCCGGCTCTAAGAAAGACAAGACATCGATACTGATCAGAGCAAGAGAGTACGTAAAATCTCTCGAGTCAAAGCTGTCAGAGCTGGAGGAGAAGAACCGGGAGCTAGAGGCGAGGCTAGCCAGCCGCC CCGCCGCCGCCGCCAAGAACGACAAAGGCGAGACGGCGGCGGCGCCAGCGCCGGAAGCCGGCGATGAGACGAAGCGAAAGGACCTAGTAGAGATCGAGGTGACGACGAGCGGCGGCGGCGCCGGAGCGGCGGATGCGGCGGCGGCGGCGGGAGGAGATCAAGAGACCTGCACGCTCAACGTAGACTTGCGCGGCGGCGGAGGCGGCGGAGGCATGAGCACGACGGACGTTGTGCTCCGGACGCTGCAGTGCCTGAGAGAGCAGATCGGCGACGGCGCCAGCCTCGTGGCGATGAGCACCAGCGCCGGCTCCGGCGGCCGCCCGCCTCGTGCAAACCTAACATTACAGCTCAAGGTGTAATTAATTAATAAAAAAGCATTCTACTAAAGAAGTTAAAGGAAAAATCTGTCTCACATCTCAGTGATCAGAAAAAAAAAAGAAGAAAAAGGGAGGTGCCATCAGTGCAAAATAGCATGCATGCATGCAAGCACATTGTTGACAGCATGATTGTACATTTTTCTCTCTTAAGATAATGGAAAACCTTACACATATT]
[+] EMBL CB626607 [ GCCAATCCTCCACCGTCCTCTCGCCGCCGCCGCCGGCGCCAGAGTTGCCGGCGACTACTACGCCGGCGACCGGCGGCGCGTTCAGGCGGTACGCGCGGCACCTCCGCCCGAGGAGACTGCCCAAGCCGGGAGGGTGCGGGCAGAGGATGTTCAAGACGGCCATGTCGGTGCTCACCAAGATGCACGTGGCGGCGACGTACAACCGCCAGTACTACTACCAGCAGGCGGCGGCCGCCGCCGCGTCGGCGTCGGCGGCCGAGGCGCCGCCGTCCGGCAACCAGCTGCAGCACATGATCTCGGAGCGGAAGCGGCGGGAGAAGCTCAACGACAGCTTCCTCGCCCTCAAGGCCGTCCTCCCTCCCGGCTCTAAGAAAGACAAGACATCGATACTGATCAGAGCAAGAGAGTACGTAAAATCTCTCGAGTCAAAGCTGTCAGAGCTGGAGGAGAAGAACCGGGAGCTAGAGGCGAGGCTAGCCAGCCGCCCCGCCGCCGCCGCCGCCAAGAACGACAAAGGCGAGACGGCGGCGGCGCCAGCGCCGGAAGCCGGCGATGAGACGAAGCGAAAGGACCTAGTAGAGATCGAGGTGACGACGAGCGGCGGCGGCGCCGGAGCGGCGGATGCGGCGGCGGCGGCGGGAGGAGATCAAGAGACCTGCACGCTCAACGTAAACTTGCGCGGCGGCGGATGCGG ]
consensusID : consensus_5566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 155 fasta sequence
[TGCACGCTCAACGTAGACTTGCGGCGGCGGAGGCGGCGGAGGCATGAGACCGACGGACGTGGTGTCGGACGCTGCAGTGCCTGAGAGAGCAGATCGCGACGGCCCAGCCTCGTGGCGATGAGCACCAGCGCGCGCTCGCGCCCGCCGCCTCGTGC]
[-] EMBL AA749725 [TGCACGCTCAACGTAGACTTGCGGCGGCGGAGGCGGCGGAGGCATGAGACCGACGGACGTGGTGTCGGACGCTGCAGTGCCTGAGAGAGCAGATCGCGACGGCCCAGCCTCGTGGCGATGAGCACCAGCGCGCGCTCGCGCCCGCCGCCTCGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5566#0 TGCATCTCTGACTATATATACACATACATGTAGCATCCTGCTCCATCTTAACTAGCTACT 60
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 ACTAGTGATGAGCAGAATCAACCTCATGCAGTAATATGCTGTGCTGATCGAATTAATTTA 120
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 CACATATATAGATAGATAGATAGATAGATCGTTCGACCAATCGAGCTAGCTTGAGCAAAC 180
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 TGATTGACCTGGTGAAGTGGTATAATTAACGAGCAGATCATGGAGGATTGCAGCAGCTGG 240
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 ATCCATGGCTACGCCAACGCTAACGCCACCGCCGGCAACAACGGCTTCATGTGCGGCTAC 300
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GCTGCCAGCTGCAGCCCAGTAGAGTTTCAGCAGCAGCAACAGCTGGTCGGCTCGCAGATT 360
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GAGCACCACCTCAACCAGATCAGCATGCAGATGGGGATGGATGACGAGTCGGCGGTGTAC 420
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GACGGCGCCTCCATGGTGGACGTCCTCCTCATGGCTTCCTCGTCGCCGCACCACCACGCC 480
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GGCGCCGGCAGCTTCCAGTACTCCTCGCCGACGTCCTCCTCCGCCTCCTTCCGCTCCGCC 540
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 TCCGTCTCGTGCAGCCCTGAGAGCTCGGCGGCGGCGACGACGCACTTCCTCGGACCGCCG 600
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GCGCCGTCCGCGGCGGCGGCGGGGTTCCATTACCCGGAGGTCTCCTCGCAGGCGCCGTTG 660
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 CCACTACCCTTGCCGCCCTACGAGCCGCAGCACGGCCAATACACCACCGTCCTCTCGCCG 720
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 CCGCCGCCGGCGCCAGAGTTGCCGGCGACTACTACGCCGGCGACCGGCGGCGCGTTCAGG 780
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 CGGTACGCGCGGCACCTCCGCCCGAGGAGGCTGCCCAAGCCGGGAGGGTGCGGGCAGAGG 840
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 ATGTTCAAGACGGCCATGTCGGTGCTCACCAAGATGCACGTGGCGGCGACGTACAACCGC 900
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 CAGTACTACTACCAGCAGGCGGCAGCCGCCGCCGCGTCGGCGTCGGCGGCCGAGGCGCCG 960
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 CCGTCCGGCAACCAGCTGCAGCACATGATCTCGGAGCGGAAGCGGCGGGAGAAGCTCAAC 1020
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GACAGCTTCCTCGCCCTCAAGGCCGTCCTCCCTCCCGGCTCTAAGAAAGACAAGACATCG 1080
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 ATACTGATCAGAGCAAGAGAGTACGTAAAATCTCTCGAGTCAAAGCTGTCAGAGCTGGAG 1140
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GAGAAGAACCGGGAGCTAGAGGCGAGGCTAGCCAGCCGCCCCGCCGCCGCCGCCAAGAAC 1200
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GACAAAGGCGAGACGGCGGCGGCGCCAGCGCCGGAAGCCGGCGATGAGACGAAGCGAAAG 1260
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GACCTAGTAGAGATCGAGGTGACGACGAGCGGCGGCGGCGCCGGAGCGGCGGATGCGGCG 1320
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GCGGCGGCGGGAGGAGATCAAGAGACCTGCACGCTCAACGTAGACTTGCGCGGCGGCGGA 1380
consensus_5566#1 ---------------------------TGCACGCTCAACGTAGACTTGC--GGCGGCGGA 31
********************** *********
consensus_5566#0 GGCGGCGGAGGCATGAGCACGACGGACGTTGTGCTCCGGACGCTGCAGTGCCTGAGAGAG 1440
consensus_5566#1 GGCGGCGGAGGCATGAGACCGACGGACGTGGTGT--CGGACGCTGCAGTGCCTGAGAGAG 89
***************** ********** *** ************************
consensus_5566#0 CAGATCGGCGACGGCGCCAGCCTCGTGGCGATGAGCACCAGCGCCGGCTCCGGCGGCCGC 1500
consensus_5566#1 CAGATCG-CGACGGC-CCAGCCTCGTGGCGATGAGCACCAGCGCGCGCTC--GCGCCCGC 145
******* ******* **************************** **** *** ****
consensus_5566#0 CCGCCTCGTGCAAACCTAACATTACAGCTCAAGGTGTAATTAATTAATAAAAAAGCATTC 1560
consensus_5566#1 C-GCCTCGTGC------------------------------------------------- 155
* *********
consensus_5566#0 TACTAAAGAAGTTAAAGGAAAAATCTGTCTCACATCTCAGTGATCAGAAAAAAAAAAGAA 1620
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GAAAAAGGGAGGTGCCATCAGTGCAAAATAGCATGCATGCATGCAAGCACATTGTTGACA 1680
consensus_5566#1 ------------------------------------------------------------
consensus_5566#0 GCATGATTGTACATTTTTCTCTCTTAAGATAATGGAAAACCTTACACATATT 1732
consensus_5566#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||