cluster # 5571

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Oryza sativa
cluster # 5571 cluster # 5571 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5571#0 length = 741 sequences # 2

consensus_5571#1 length = 261 sequences # 1

consensusID : consensus_5571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 741
fasta sequence

                              [GGACGAGACAAGGGGAAAGTTTATTACCAAGGTCATGTGGAGAAATATCATGGGGCAAAGTTTATATCAGCTATTTGTACTTGGAGCTCTCATGTTTGGTGGGGAAAGGCTTCTGAACATCAAGGGTGCAGATTCCAAGTCCATCATAAATACACTGATATTCAACTCCTTCGTGTTTTGTCAGGTATTCGATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTTTCCGTGGCATCATCAGCAATTGGATCTTCATTGCAGCCATAGCAGCAACCGTAGCATTTCAAGTGGTGATCATAGAGTTTCTTNNCACTTTCGCCAGTACTGTTCCGCTCAACTGGCAACATTGGCTGCTCAGCGTCGGCCTTGGCTCCATCAGTCTGATTGTTGGTGTCATCTTGAAGTGTATACCAGTTGGTTCAGGTGAAACCTCTGCAACTCCAAATGGATACAGGCCACTTGCCAATGGCCCTGATGACATATAGCTGAAGAGTAATCACTAATAAGGGAAAGTAGAATCCAGGGTGCAATACAGCATCCAGCTGCTCAGCTCAGTTCAGNTGTTTTGGAATACACTAACCAACCACTGATTTTGGTCAAATTNTGCCAAACTCCTGGCATGNAATTGGTACTACATCACACGNTACTGGATGNGCACCCTTACCACTCTGCTTTCAACTTCAGACTTCATTGTATCAGTGAATTCATATTATCATTATGACGGTTGGTGGTTTGG]

[+] EMBL CA766334             [GGACGAGACAAGGGGAAAGTTTATTACCAAGGTCATGTGGAGAAATATCATGGGGCAAAGTTTATATCAGCTATTTGTACTTGGAGCTCTCATGTTTGGTGGGGAAAGGCTTCTGAACATCAAGGGTGCAGATTCCAAGTCCATCATAAATACACTGATATTCAACTCCTTCGTGTTTTGTCAGGTATTCGATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTTTCCGTGGCATCATCAGCAATTGGATCTTCATTGCAGCCATAGCAGCAACCGTAGCATTTCAAGTGGTGATCATAGAGTTTCTTNNCACTTTCGCCAGTACTGTTCCGCTCAACTGGCAACATTGGCTGCTCAGCGTCGGCCTTGGCTCCATCAGTCTGATTGTTGGTGTCATCTTGAAGTGTATACCAGTTGGTTCAGGTGAAACCTCTGCAACTCCAAATGGATACAGGCCACTTGCCAATGGCCCTGATGACATATAGCTGAAGAGTAATCACTAATAAGGGAAAGTAGAATCCAGGGTGCAATACAGCATCCAGCTGCTCAGCTCAGTTCAGNTGTTTTGGAATACACTAACCAACCACTGATTTTGGTCAAATTNTGCCAAACTCCTGGCATGNAATTGGTACTACATCACACGNTACTGGATGNGCACCCTTAC                                                                        ]
[+] EMBL CB096327             [                                                                                                                                                     ATACACTGATATTCAACTCCTTCGTGTTTTGTCGGGTATTCAATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTTTCCGTGGCATCATCAGCAATTGGATCTTCATTGCAGTCATAGCAGCAACCGTAGCATTTCAAGTGGTGATCATAGAGTTTCTTGGCACTTTCGCCAGTACTGTTCCGCTCAACTGGCAACATTGGCTGCTCAGCGTCGGCCTTGGCTCCATCAGTCTGATTGTTGGTGTCATCTTGTAGTGTATACCAGTTGGTTCAGGTGAAACCTCTGCAACTCCAAATGGATACAGGCCACTTGCCAATGGCCCTGATGACATATAGCTGAAGAGTAATCACTAATAAGGGAAAGTAGAATCCAGGGTGCAATACAGCATCCAGCTGCTCAGCTCAGTTCAGTTGTTTTGGAATACACTAACCAACCACTGATTTTGTTCAAATTTTGCCAAACTCCTGTCATGTAATTGTTACTACATCACACGTTACT GATGTGCACCCTTACCACTCTGCTTTCAACTTCAGACTTCATTGTATCAGTGAATTCATATTATCATTATGACGGTTGGTGGTTTGG]




>consensus_5571#0
GGACGAGACAAGGGGAAAGTTTATTACCAAGGTCATGTGGAGAAATATCATGGGGCAAAG
TTTATATCAGCTATTTGTACTTGGAGCTCTCATGTTTGGTGGGGAAAGGCTTCTGAACAT
CAAGGGTGCAGATTCCAAGTCCATCATAAATACACTGATATTCAACTCCTTCGTGTTTTG
TCAGGTATTCGATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTTTCCGTGGCAT
CATCAGCAATTGGATCTTCATTGCAGCCATAGCAGCAACCGTAGCATTTCAAGTGGTGAT
CATAGAGTTTCTTNNCACTTTCGCCAGTACTGTTCCGCTCAACTGGCAACATTGGCTGCT
CAGCGTCGGCCTTGGCTCCATCAGTCTGATTGTTGGTGTCATCTTGAAGTGTATACCAGT
TGGTTCAGGTGAAACCTCTGCAACTCCAAATGGATACAGGCCACTTGCCAATGGCCCTGA
TGACATATAGCTGAAGAGTAATCACTAATAAGGGAAAGTAGAATCCAGGGTGCAATACAG
CATCCAGCTGCTCAGCTCAGTTCAGNTGTTTTGGAATACACTAACCAACCACTGATTTTG
GTCAAATTNTGCCAAACTCCTGGCATGNAATTGGTACTACATCACACGNTACTGGATGNG
CACCCTTACCACTCTGCTTTCAACTTCAGACTTCATTGTATCAGTGAATTCATATTATCA
TTATGACGGTTGGTGGTTTGG

consensusID : consensus_5571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [GGCTCCATCAGCCTGATTGTTTGGTGTCATCTTGAAGTGTATACCCGTTGGTTCAGGTGAAACCTCTGCAACTCCCAATGGATACACGGCCACCTTGCCCATGGCCCTGATGACATATAGCTGAAGAATAATCACTATAAGGGAAAGTAGAATCCACGGGTGCCATACGGCATCCAGCTGCCCAGCTCAGTTCAGTTGTTTTGGAATACACTAACCATCCCCTGATTTTGTTCCAATTTTGCCCAACTGCACTATATCCTG]

[+] EMBL BI808936             [GGCTCCATCAGCCTGATTGTTTGGTGTCATCTTGAAGTGTATACCCGTTGGTTCAGGTGAAACCTCTGCAACTCCCAATGGATACACGGCCACCTTGCCCATGGCCCTGATGACATATAGCTGAAGAATAATCACTATAAGGGAAAGTAGAATCCACGGGTGCCATACGGCATCCAGCTGCCCAGCTCAGTTCAGTTGTTTTGGAATACACTAACCATCCCCTGATTTTGTTCCAATTTTGCCCAACTGCACTATATCCTG]




>consensus_5571#1
GGCTCCATCAGCCTGATTGTTTGGTGTCATCTTGAAGTGTATACCCGTTGGTTCAGGTGA
AACCTCTGCAACTCCCAATGGATACACGGCCACCTTGCCCATGGCCCTGATGACATATAG
CTGAAGAATAATCACTATAAGGGAAAGTAGAATCCACGGGTGCCATACGGCATCCAGCTG
CCCAGCTCAGTTCAGTTGTTTTGGAATACACTAACCATCCCCTGATTTTGTTCCAATTTT
GCCCAACTGCACTATATCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5571#0      GGACGAGACAAGGGGAAAGTTTATTACCAAGGTCATGTGGAGAAATATCATGGGGCAAAG 60
consensus_5571#1      ------------------------------------------------------------
                                                                                  

consensus_5571#0      TTTATATCAGCTATTTGTACTTGGAGCTCTCATGTTTGGTGGGGAAAGGCTTCTGAACAT 120
consensus_5571#1      ------------------------------------------------------------
                                                                                  

consensus_5571#0      CAAGGGTGCAGATTCCAAGTCCATCATAAATACACTGATATTCAACTCCTTCGTGTTTTG 180
consensus_5571#1      ------------------------------------------------------------
                                                                                  

consensus_5571#0      TCAGGTATTCGATGAAATAAACAGCAGAGAAATGCAGAAGATCAATGTTTTCCGTGGCAT 240
consensus_5571#1      ------------------------------------------------------------
                                                                                  

consensus_5571#0      CATCAGCAATTGGATCTTCATTGCAGCCATAGCAGCAACCGTAGCATTTCAAGTGGTGAT 300
consensus_5571#1      ------------------------------------------------------------
                                                                                  

consensus_5571#0      CATAGAGTTTCTTNNCACTTTCGCCAGTACTGTTCCGCTCAACTGGCAACATTGGCTGCT 360
consensus_5571#1      ------------------------------------------------------------
                                                                                  

consensus_5571#0      CAGCGTCGGCCTTGGCTCCATCAGTCTGATTGTT-GGTGTCATCTTGAAGTGTATACCAG 419
consensus_5571#1      -------------GGCTCCATCAGCCTGATTGTTTGGTGTCATCTTGAAGTGTATACCCG 47
                                   *********** ********* *********************** *

consensus_5571#0      TTGGTTCAGGTGAAACCTCTGCAACTCCAAATGGATACA-GGCCAC-TTGCCAATGGCCC 477
consensus_5571#1      TTGGTTCAGGTGAAACCTCTGCAACTCCCAATGGATACACGGCCACCTTGCCCATGGCCC 107
                      **************************** ********** ****** ***** *******

consensus_5571#0      TGATGACATATAGCTGAAGAGTAATCACTAATAAGGGAAAGTAGAATCCA-GGGTGCAAT 536
consensus_5571#1      TGATGACATATAGCTGAAGAATAATCACTA-TAAGGGAAAGTAGAATCCACGGGTGCCAT 166
                      ******************** ********* ******************* ****** **

consensus_5571#0      ACAGCATCCAGCTGCTCAGCTCAGTTCAGNTGTTTTGGAATACACTAACCAACCACTGAT 596
consensus_5571#1      ACGGCATCCAGCTGCCCAGCTCAGTTCAGTTGTTTTGGAATACACTAACCATCCCCTGAT 226
                      ** ************ ************* ********************* ** *****

consensus_5571#0      TTTGGTCAAATTNTGCCAAACTCCTGGCATGNAATTGGTACTACATCACACGNTACTGGA 656
consensus_5571#1      TTTGTTCCAATTTTGCCCAACTGC-ACTATATCCTG------------------------ 261
                      **** ** **** **** **** *    **    *                         

consensus_5571#0      TGNGCACCCTTACCACTCTGCTTTCAACTTCAGACTTCATTGTATCAGTGAATTCATATT 716
consensus_5571#1      ------------------------------------------------------------
                                                                                  

consensus_5571#0      ATCATTATGACGGTTGGTGGTTTGG 741
consensus_5571#1      -------------------------