These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2340 fasta sequence [CCTTGTGGCAGCCAGAGAATTTGGATTTGAATTTTTCAAGAGAACACAATCAAGTGTCTTTGTCAGGGAGAAATTCAGCTCTTCCAATGGCCCAGTTGAGAGGGAGTTCAAGATTCTCAATCTATTGGAGTTCAACAGCAAAAGAAAACGAATGTCAGTAATTCTGAAGGATGAAGATGGGCAAATTCTTCTTTTTTGCAAAGGAGCAGATAGCATCATATTTGATAGACTGGCAAAAAATGGAAGGATGATTGAAGCTGATACGAGCAAGCATCTCAATGATTATGGTGAGGCAGGCTTGCGGACACTGGCTCTATCATACAGAGTGCTCGATGAATCAGAATATTCCTCTTGGAATGCTGAGTTTCTTAAAGCAAAGACCTCTATTGGACCTGACAGAGAATTGCAACTTGAGCGAGTCTCAGAATTGATTGAAAGAGACCTGATCCTTGTTGGTGCAACTGCAGTAGAGGACAAACTGCAAAGTGGGGTTCCTCAGTGCATAGATCGTTTGGCACAAGCAGGTCTCAAAATCTGGGTTCTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATACGCATGCAGTTTACTGAGGCAAGGCATGAGAAGGATATGTTTGTCAATACCCACTGATGACCAAGTAGCCCAGGATGCAAATAAGGCTGCAAAGGAGAGTCTCATGTCGCAAATCGCAAATGGTTCACAAATGGTCAAGCTAGAGAAGGATCCTGATGCAGCATTTGCTCTAGTTATAGATGGAAAAGCGCTCACATTTGCTTTGGAAGATGACATGAAGCATATGTTCCTGAATCTTGCAATAGAGTGCGCTTCTGTCATATGTTGCCGTGTGTCCCCAAAGCAAAAAGCACTGGTGACTCGACTGGTCAAAGAAGGTATTGGAAAAACTACATTAGCAATAGGTGATGGTGCAAATGATGTAGGCATGATTCAAGAAGCTGATATAGGAGTTGGTATAAGTGGGGTAGAGGGCATGCAGGCTGTGATGGCTAGTGACTTTTCTATATCCCAATTTCGGTTCCTTGAGAGACTACTCGTAGTCCATGGCCATTGGTGCTATAAGAGAATTGCCCAAATGATCTGCTACTTCTTCTACAAGAATATTGCTTTTGGACTTACTATATTTTACTTTGAGGCATTTGCTGGATTTTCTGGTCAATCAGTTTATGATGATTGGTTTATGCTGCTCTTCAATGTTGTTCTTACCTCACTGCCTGTTATCTCACTTGGGGTATTTGAGCAGGATGTTTCATCTGAAATCTGCTTGCAGTTCCCGGCGTTATATCAGCAAGGACCGAGAAATCTTTTCTTCGATTGGTACCGGATTTTAGGATGGATGGCGAATGGCCTCTACTCATCTCTGGCCATATTCTTTCTCAACATCTGTATATTCTATGATCAGGCAATCCGTTCTGGAGGACAGACTGCTGACATGGCTGCAGTGGGAACTACTATGTTCACCTGCATCATCTGGGCTGTCAACATGCAGATTGCGCTGACAATGAGCCATTTCACCTGGATTCAACATCTCTTTGTCTGGGGCAGCGTAGGTACTTGGTACCTCTTCATAATCGTCTATGGCTCGGCGTTGAGGTCCCGCGACAATTACCAGATTCTACTGGAGGTTCTTGGACCTGCTCCCTTGTACTGGGCAGCAACTCTTCTGGTGACTGCTGCTTGCAACATGCCCTACCTGATCCACATATCCTACCAGAGATTGTGCAATCCACTTGATCACCATGTGATTCAAGAGATCAAGTACCTGAAGAAGGACGTCGAAGACCAAACGATGTGGAAGAGGGAGCGGTCGAAGGCCCGGCAGCGGACGAAGATTGGTTTCACCGCGAGGGTCGATGCGAAGATCAAGCAGATCAGGGGGAAGTTGCACAAGAAGGCCCCATCCCTAACCATCCATACTGTATCGTAGTGACATCTGAGTCATCTGACCGGCGTTTCGACAGTAGTTGTCACCTTACTTTTTTTCTCATGCAAGGCAGCGGTTTTTGGCTTCTCTCCCAGCTATACAGTGAAATTCTTTCTCTTCTTTTTTCTTTTTTTGGTCTTAATTTTCTGATCATATTGGATTTTTTTTTCTCCGTTCGTGTAAGGAATGTTGGGGGTGTGATGGGTGGCATTTCCCCGAGTAGAAGTTCCAAAGCCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTTATTCTTTTTCCTGGCAATGTCTTCGCTGTAATTATTCGAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAA] [+] EMBL AK066838 [CCTTGTGGCAGCCAGAGAATTTGGATTTGAATTTTTCAAGAGAACACAATCAAGTGTCTTTGTCAGGGAGAAATTCAGCTCTTCCAATGGCCCAGTTGAGAGGGAGTTCAAGATTCTCAATCTATTGGAGTTCAACAGCAAAAGAAAACGAATGTCAGTAATTCTGAAGGATGAAGATGGGCAAATTCTTCTTTTTTGCAAAGGAGCAGATAGCATCATATTTGATAGACTGGCAAAAAATGGAAGGATGATTGAAGCTGATACGAGCAAGCATCTCAATGATTATGGTGAGGCAGGCTTGCGGACACTGGCTCTATCATACAGAGTGCTCGATGAATCAGAATATTCCTCTTGGAATGCTGAGTTTCTTAAAGCAAAGACCTCTATTGGACCTGACAGAGAATTGCAACTTGAGCGAGTCTCAGAATTGATTGAAAGAGACCTGATCCTTGTTGGTGCAACTGCAGTAGAGGACAAACTGCAAAGTGGGGTTCCTCAGTGCATAGATCGTTTGGCACAAGCAGGTCTCAAAATCTGGGTTCTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATACGCATGCAGTTTACTGAGGCAAGGCATGAGAAGGATATGTTTGTCAATACCCACTGATGACCAAGTAGCCCAGGATGCAAATAAGGCTGCAAAGGAGAGTCTCATGTCGCAAATCGCAAATGGTTCACAAATGGTCAAGCTAGAGAAGGATCCTGATGCAGCATTTGCTCTAGTTATAGATGGAAAAGCGCTCACATTTGCTTTGGAAGATGACATGAAGCATATGTTCCTGAATCTTGCAATAGAGTGCGCTTCTGTCATATGTTGCCGTGTGTCCCCAAAGCAAAAAGCACTGGTGACTCGACTGGTCAAAGAAGGTATTGGAAAAACTACATTAGCAATAGGTGATGGTGCAAATGATGTAGGCATGATTCAAGAAGCTGATATAGGAGTTGGTATAAGTGGGGTAGAGGGCATGCAGGCTGTGATGGCTAGTGACTTTTCTATATCCCAATTTCGGTTCCTTGAGAGACTACTCGTAGTCCATGGCCATTGGTGCTATAAGAGAATTGCCCAAATGATCTGCTACTTCTTCTACAAGAATATTGCTTTTGGACTTACTATATTTTACTTTGAGGCATTTGCTGGATTTTCTGGTCAATCAGTTTATGATGATTGGTTTATGCTGCTCTTCAATGTTGTTCTTACCTCACTGCCTGTTATCTCACTTGGGGTATTTGAGCAGGATGTTTCATCTGAAATCTGCTTGCAGTTCCCGGCGTTATATCAGCAAGGACCGAGAAATCTTTTCTTCGATTGGTACCGGATTTTAGGATGGATGGCGAATGGCCTCTACTCATCTCTGGCCATATTCTTTCTCAACATCTGTATATTCTATGATCAGGCAATCCGTTCTGGAGGACAGACTGCTGACATGGCTGCAGTGGGAACTACTATGTTCACCTGCATCATCTGGGCTGTCAACATGCAGATTGCGCTGACAATGAGCCATTTCACCTGGATTCAACATCTCTTTGTCTGGGGCAGCGTAGGTACTTGGTACCTCTTCATAATCGTCTATGGCTCGGCGTTGAGGTCCCGCGACAATTACCAGATTCTACTGGAGGTTCTTGGACCTGCTCCCTTGTACTGGGCAGCAACTCTTCTGGTGACTGCTGCTTGCAACATGCCCTACCTGATCCACATATCCTACCAGAGATTGTGCAATCCACTTGATCACCATGTGATTCAAGAGATCAAGTACCTGAAGAAGGACGTCGAAGACCAAACGATGTGGAAGAGGGAGCGGTCGAAGGCCCGGCAGCGGACGAAGATTGGTTTCACCGCGAGGGTCGATGCGAAGATCAAGCAGATCAGGGGGAAGTTGCACAAGAAGGCCCCATCCCTAACCATCCATACTGTATCGTAGTGACATCTGAGTCATCTGACCGGCGTTTCGACAGTAGTTGTCACCTTACTTTTTTTCTCATGCAAGGCAGCGGTTTTTGGCTTCTCTCCCAGCTATACAGTGAAATTCTTTCTCTTCTTTTTTCTTTTTTTGGTCTTAATTTTCTGATCATATTGGATTTTTTTTTCTCCGTTCGTGTAAGGAATGTTGGGGGTGTGATGGGTGGCATTTCCCCGAGTAGAAGTTCCAAAGCCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTT ] [+] EMBL CF322042 [ CCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTTATTCTTTTTCCTGGCAATGTCTTCGCTGTAATTATTCGAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAA] consensusID : consensus_5579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 97 fasta sequence [ATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTCTGCTTATTCTTTTTGGGCAAAAAAAGGGGCC] [+] EMBL CF301289 [ATAGCTCATTTCAGTTGGAAGAAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTCTGCTTATTCTTTTTGGGCAAAAAAAGGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5579#0 CCTTGTGGCAGCCAGAGAATTTGGATTTGAATTTTTCAAGAGAACACAATCAAGTGTCTT 60 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TGTCAGGGAGAAATTCAGCTCTTCCAATGGCCCAGTTGAGAGGGAGTTCAAGATTCTCAA 120 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TCTATTGGAGTTCAACAGCAAAAGAAAACGAATGTCAGTAATTCTGAAGGATGAAGATGG 180 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GCAAATTCTTCTTTTTTGCAAAGGAGCAGATAGCATCATATTTGATAGACTGGCAAAAAA 240 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TGGAAGGATGATTGAAGCTGATACGAGCAAGCATCTCAATGATTATGGTGAGGCAGGCTT 300 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GCGGACACTGGCTCTATCATACAGAGTGCTCGATGAATCAGAATATTCCTCTTGGAATGC 360 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TGAGTTTCTTAAAGCAAAGACCTCTATTGGACCTGACAGAGAATTGCAACTTGAGCGAGT 420 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CTCAGAATTGATTGAAAGAGACCTGATCCTTGTTGGTGCAACTGCAGTAGAGGACAAACT 480 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GCAAAGTGGGGTTCCTCAGTGCATAGATCGTTTGGCACAAGCAGGTCTCAAAATCTGGGT 540 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TCTGACAGGTGATAAGATGGAAACTGCAATCAACATTGGATACGCATGCAGTTTACTGAG 600 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GCAAGGCATGAGAAGGATATGTTTGTCAATACCCACTGATGACCAAGTAGCCCAGGATGC 660 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 AAATAAGGCTGCAAAGGAGAGTCTCATGTCGCAAATCGCAAATGGTTCACAAATGGTCAA 720 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GCTAGAGAAGGATCCTGATGCAGCATTTGCTCTAGTTATAGATGGAAAAGCGCTCACATT 780 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TGCTTTGGAAGATGACATGAAGCATATGTTCCTGAATCTTGCAATAGAGTGCGCTTCTGT 840 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CATATGTTGCCGTGTGTCCCCAAAGCAAAAAGCACTGGTGACTCGACTGGTCAAAGAAGG 900 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TATTGGAAAAACTACATTAGCAATAGGTGATGGTGCAAATGATGTAGGCATGATTCAAGA 960 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 AGCTGATATAGGAGTTGGTATAAGTGGGGTAGAGGGCATGCAGGCTGTGATGGCTAGTGA 1020 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CTTTTCTATATCCCAATTTCGGTTCCTTGAGAGACTACTCGTAGTCCATGGCCATTGGTG 1080 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CTATAAGAGAATTGCCCAAATGATCTGCTACTTCTTCTACAAGAATATTGCTTTTGGACT 1140 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TACTATATTTTACTTTGAGGCATTTGCTGGATTTTCTGGTCAATCAGTTTATGATGATTG 1200 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GTTTATGCTGCTCTTCAATGTTGTTCTTACCTCACTGCCTGTTATCTCACTTGGGGTATT 1260 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TGAGCAGGATGTTTCATCTGAAATCTGCTTGCAGTTCCCGGCGTTATATCAGCAAGGACC 1320 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GAGAAATCTTTTCTTCGATTGGTACCGGATTTTAGGATGGATGGCGAATGGCCTCTACTC 1380 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 ATCTCTGGCCATATTCTTTCTCAACATCTGTATATTCTATGATCAGGCAATCCGTTCTGG 1440 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 AGGACAGACTGCTGACATGGCTGCAGTGGGAACTACTATGTTCACCTGCATCATCTGGGC 1500 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TGTCAACATGCAGATTGCGCTGACAATGAGCCATTTCACCTGGATTCAACATCTCTTTGT 1560 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CTGGGGCAGCGTAGGTACTTGGTACCTCTTCATAATCGTCTATGGCTCGGCGTTGAGGTC 1620 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CCGCGACAATTACCAGATTCTACTGGAGGTTCTTGGACCTGCTCCCTTGTACTGGGCAGC 1680 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 AACTCTTCTGGTGACTGCTGCTTGCAACATGCCCTACCTGATCCACATATCCTACCAGAG 1740 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 ATTGTGCAATCCACTTGATCACCATGTGATTCAAGAGATCAAGTACCTGAAGAAGGACGT 1800 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CGAAGACCAAACGATGTGGAAGAGGGAGCGGTCGAAGGCCCGGCAGCGGACGAAGATTGG 1860 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TTTCACCGCGAGGGTCGATGCGAAGATCAAGCAGATCAGGGGGAAGTTGCACAAGAAGGC 1920 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CCCATCCCTAACCATCCATACTGTATCGTAGTGACATCTGAGTCATCTGACCGGCGTTTC 1980 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 GACAGTAGTTGTCACCTTACTTTTTTTCTCATGCAAGGCAGCGGTTTTTGGCTTCTCTCC 2040 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 CAGCTATACAGTGAAATTCTTTCTCTTCTTTTTTCTTTTTTTGGTCTTAATTTTCTGATC 2100 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 ATATTGGATTTTTTTTTCTCCGTTCGTGTAAGGAATGTTGGGGGTGTGATGGGTGGCATT 2160 consensus_5579#1 ------------------------------------------------------------ consensus_5579#0 TCCCCGAGTAGAAGTTCCAAAGCCAGCCATGTAAAAAGTATAGCTCATTTCAGTTGGAAG 2220 consensus_5579#1 ---------------------------------------ATAGCTCATTTCAGTTGGAAG 21 ********************* consensus_5579#0 AAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTTTGCTTATTCTTTTTC 2280 consensus_5579#1 AAGAACCTCTCTAGATAGCTGACAATATATGTATATCTGCAATTCTGCTTATTCTTTTT- 80 ******************************************** ************** consensus_5579#0 CTGGCAATGTCTTCGCTGTAATTATTCGAAAAAAAAAAAAAAAAAAAAATTTTAAAAAAA 2340 consensus_5579#1 -GGGCAAAAAAAGGGGCC------------------------------------------ 97 ***** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||