These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [GGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGCCGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCCGGCAAGCTCGCCGCCAACGCCCGCGCCGCGTACTAGCTAGCCCGCGCCGTGTTCTTGGGCAGGGCAGCCTCTACGAGGATGAGCGGCGGCGGACGTCGGCGGTAAAACTCGCTCTTTGTTGCTCCGCGCTGGATGTTGGTACTCTGGTTCAGTCCGCCCCCCTCTAATATTTAAACCGCTCCCCTATTTTTTTTATGTGGTGGTTATCGCCAACAATTTGAACCAATAACGATACAAGCTACTCTTTTACTTCCTCTTCTTATCTCTTTTATAAATATTACCTATATCCCATTATTTTTTTATAAACTGTCACCTTATTTCCTTTCTCCTCTGCCCCTCCTATTTACATTTTAACCCGCTTTGCTTATAGTTTTCTCCGCGCCCACCATCATGTTGTAATATCCATGTTCCTCGTTTATACCTTCTCTCCTAGCTACCTATTCGTATTCCCCTTTTATAACATTATGCGCTAGTGTCTGCGATTTTTGTTCGACTCTACCCGGGCTGGCAGATGGCTTGGTGCGTGGTCGTTTGTACATAGTGTTGGTGTGATTTTTTAAATTTTTTGGTGTTGAAATCAATGAGTTTGGAAGTTTTGACATTGATTATAAGAGTGGATGGTGGTTGATA] [+] EMBL CA758645 [GGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGCCGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCCGGCAAGCTCGCCGCCAACGCCCGCGCCGCGTACTAGCTAGCCCGCGCCGTGTTCTTGGGCAGGGCAGCCTCTACGAGGATGAGCGGCGGCGGACGTCGGCGGTAAAACTCGCTCTTTGTTGCTCCGCGCTGGATGTTGGTACTCTGGTTCAGTCCGCCCCCCTCTAATATTTAAACCGCTCCCCTATTTTTTTTATGTGGTGGTTATCGCCAACAATTTGAACCAATAACGATACAAGCTACTCTTTTACTTCCTCTTCTTATCTCTTTTATAAATATTACCTATATCCCATTATTTTTTTATAAACTGTCACCTTATTTCCTTTCTCCTCTGCCCCTCCTATTTACATTTTAACCCGCTTTGCTTATAGTTTTCTCCGCGCCCACCATCATGTTGTAATATCCATGTTCCTCGTTTATACCTTCTCTCCTAGCTACCTATTCGTATTCCCCTTTTATAACATTATGCGCTAGTGTCTGCGATTTTTGTTCGACTCTACCCGGGCTGGCAGATGGCTTGGTGCGTGGTCGTTTGTACATAGTGTTGGTGTGATTTTTTAAATTTTTTGGTGTTGAAATCAATGAGTTTGGAAGTTTTGACATTGATTATAAGAGTGGATGGTGGTTGATA] consensusID : consensus_5584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [AGAAGCGCGCGAGAGAAGAGAAGAGAAGCTAAGCTAGCCATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGCGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGCGGCTGCACCTGCGGCCGCGGGAGGGGATCGCGGCGTCGTTCTCGTCGCGCGCCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGACGTCGAGGGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCGTCCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAGCCGGAGATCGACACGTACACCCGCTCTCTCGCAGGCTTGCAGCAAATCTCTGAACTTTTGGAGCCAAAGCTTAGCCAGCCGCCTTCCTCTGCTTTCCTGCGACATAGTAATAGGTCTCTGCTTCTGATGATCTGTTCTTCT] [+] EMBL AK105197 [AGAAGCGCGCGAGAGAAGAGAAGAGAAGCTAAGCTAGCCATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGCGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGCGGCTGCACCTGCGGCCGCGGGAGGGGATCGCGGCGTCGTTCTCGTCGCGCGCCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGACGTCGAGGGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCGTCCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAGCCGGAGATCGACACGTACACCCGCTCTCTCGCAGGCTTGCAGCAAATCTCTGAACTTTTGGAGCCAAAGCTTAGCCAGCCGCCTTCCTCTGCTTTCCTGCGACATAGTAATAGGTCTCTGCTTCTGATGATCTGTTCTTCT] consensusID : consensus_5584#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [ATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGATGCCGAGGGGCGGCGCCTGGAGCANCCGCCGCCNCCGCGCTCGCCGCTGCGCANCCGCTTGCCGTNGTCCATCAAGATCGTGGCCAAAGCNGG] [+] EMBL OSS15750A [ATCAAGGTCTCGAAGAGGAAGCAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCGTGCCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGGAAGGCCGGGGCGGAGTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTGATGGGGGAGCGGTGCCAGCCGCTGGACTTCTCCGGCGTGATCTACTACGATGCCGAGGGGCGGCGCCTGGAGCANCCGCCGCCNCCGCGCTCGCCGCTGCGCANCCGCTTGCCGTNGTCCATCAAGATCGTGGCCAAAGCNGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5584#1 AGAAGCGCGCGAGAGAAGAGAAGAGAAGCTAAGCTAGCCATCAAGGTCTCGAAGAGGAAG 60 consensus_5584#2 ------------------------------------------------------------ consensus_5584#0 --GGGTGAGCGGTGCCAGCCGCTGGACTTCTCCGGGGTGATCTACTACGACGCCGACGGC 58 consensus_5584#1 CAAGAGCGCGAGGAGGAGAGGAGGAGGAGGCGGCGGCGGCGGCGATGGGGATGAGCATCG 120 consensus_5584#2 ------------------------------------------------------------ consensus_5584#0 CGCCGCCTCGCGCACCCGCCGCCGCCGCGCTCCCCGATGCGCAGCCCTCTCCCGGTCTCC 118 consensus_5584#1 CGCAGGCGGTGGCGGCGCTGATGGGGACGTGCGCGAGGCGGCTGTCGCGGGCGGCGCGGC 180 consensus_5584#2 -----------------------------------ATCAAGGTCTCGAAGAGGAAGCAAG 25 consensus_5584#0 GGCAAGCT-CGCCGCCAACGCCCGCGCCGCGTACTAGCTAGCCCGCGCCGTGTTCTTGGG 177 * * ** * consensus_5584#1 GGCTGCACCTGCGGCCGCGGGAGGGGATCGCGG-CGTCGTTCTCGTCGCGCGCCATCGTG 239 consensus_5584#2 AGC-GCGAGGAGGAGAGGAGGAGGAGGCGGCGG-CGGCGGCGATGGGGATGAGCATCGTG 83 consensus_5584#0 CAGGGCAGCCTCTACGAGGATGAGCGGCGGCGGACGTCGGCGGTAAAACTCGCTCTT-TG 236 ** * * **** ** ** * ** consensus_5584#1 CCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGG 299 consensus_5584#2 CCGTTCCTGGGCGGCGGAGGCGGCGGGAAGAAGGCTATCTCGTCGTCGAGGAGGAGGAGG 143 consensus_5584#0 TTGCTCC---GCGCTGGA--TGTTGGTACTCTGGTTCAGTC--CGCCCCCCTCTAATATT 289 * *** *** *** * ** * ** * ** ** * * * consensus_5584#1 AAGGCCGGGGCGGAGCTGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTG 359 consensus_5584#2 AAGGCCGGGGCGGAG-TGAGCTTCCGCGCGGAGGACGGGGTGTGGAGGAAGGAGATACTG 202 consensus_5584#0 TAAACCGCTCCCCTATTTTTTTTATGTGGTGGTTATCGCCAACAATTTGAACCAATAACG 349 * *** * * ** * * * * * * *** * consensus_5584#1 ATGGGGGA-GCGGTGCCAGCCGCTGGACTTCTCCGGCGTG-ATCTACTACG-ACGTCGAG 416 consensus_5584#2 ATGGGGGA-GCGGTGCCAGCCGCTGGACTTCTCCGGCGTG-ATCTACTACG-ATGCCGAG 259 consensus_5584#0 ATACAAGCTACTCTTTTACTTCCTCTTCTTATCTCTTTTATAAATATTACCTATATCCCA 409 ** * * * * ** *** ** * * ** *** * * consensus_5584#1 GGGCGGCGCCTGGAGCAGCCGCCGCCGCCGCGCTCGCCGCTGCGCAGCCCGCTGCCGTCG 476 consensus_5584#2 GGGCGGCGCCTGGAGCANCCGCCGCCNCCGCGCTCGCCGCTGCGCANCCGCTTGCCGTNG 319 consensus_5584#0 TTATTTTTTTATAAACTGTCACCTTATTTCCTTTCTCCTCTGCCCCTCCTATTTACATTT 469 * * * ** * ** ** **** * ** * * * consensus_5584#1 T---CCATCAAGCTCGCGGCCAACGCCGGCGGCGGCGGCGGCTACTAGCCGGAGATCGAC 533 consensus_5584#2 T---CCATCAAGATCGTGGCCAAAGCNGG------------------------------- 345 consensus_5584#0 TAACCCGCTTTGCTTATAGTTTTCTCCGCGCCCACCATCATGTTGTAATATCCATGTTCC 529 * ** * * * * * consensus_5584#1 ACGTACACCCGCTCTCTCGCAGGCTTGCAGCAAATCTCTGAACTTTTGGAGCCAAAGCTT 593 consensus_5584#2 ------------------------------------------------------------ consensus_5584#0 TCGTTTATACCTTCTCTCCTAGCTACCTATTCGTATTCCCCTTTTATAACATTATGCGCT 589 consensus_5584#1 AGC--CAGCCGCCTTCCTCTGCTTTCCTGCGACATAGTAATAGGTCTCTGCTTCTGATGA 651 consensus_5584#2 ------------------------------------------------------------ consensus_5584#0 AGTGTCTGCGATTTTTGTTCGACTCTACCCGGGCTGGCAGATGG-CTTGGTGCGTGGTCG 648 consensus_5584#1 TCTGTTCTTCT------------------------------------------------- 662 consensus_5584#2 ------------------------------------------------------------ consensus_5584#0 TTTGTACATAGTGTTGGTGTGATTTTTTAAATTTTTTGGTGTTGAAATCAATGAGTTTGG 708 consensus_5584#1 ---------------------------------------- consensus_5584#2 ---------------------------------------- consensus_5584#0 AAGTTTTGACATTGATTATAAGAGTGGATGGTGGTTGATA 748 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||