cluster # 5586

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Oryza sativa
cluster # 5586 cluster # 5586 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5586#0 length = 486 sequences # 2

consensus_5586#1 length = 394 sequences # 1

consensusID : consensus_5586#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 486
fasta sequence

                              [CGTGGCGACTTGAAGGACACGATGCGATTGTGGGATTGTTGCTGATGCCACCAAGTTTGCCATGAGTGAATGGAAAATGCTCTTGGCTCGACATGAGTCTGGTTGCTGATTGCGTGCCCCGAACCGAATTGTTGCGCTGGGTTTGTTTGTAAGTAAGCTAAGTAAATAGTGACACGATGGAGCTGCGAGAGGACAAGAATTTGATGTTGTTTATGCAAGGGGAAACCATCTAGGGTTAGTGATAATACTAATAAATTGAGGCCACACTTTGTGCATGTGCTGACCCTTGAATGATGAGAAATGCGAAATAATGATAGAAATGCAAAAGGTT-AAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTTGAAAAA]

[+] EMBL BI802721             [CGTGGCGACTTGAAGGACACGATGCGATTGTGGGATTGTTGCTGATGCCACCAAGTTTGCCATGAGTGAATGGAAAATGCTCTTGGCTCGACATGAGTCTGGTTGCTGATTGCGTGCCCCGAACCGAATTGTTGCGCTGGGTTTGTTTGTAAGTAAGCTAAGTAAATAGTGACACGATGGAGCTGCGAGAGGACAAGAATTTGATGTTGTTTATGCAAGGGGAAACCATCTAGGGTTAGTGATAATACTAATAAATTGAGGCCACACTTTGTGCATGTGCTGACCCTTGAATGATGAGAAATGCGAAATAATGATAGAAATGCAAAAGGTT AAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTA                                              ]
[+] EMBL BI801395             [                                                                                                                                                                                                                                                                                                                             AAAT C AAAGGTTAAAATAAGAAGAAAGTCC ATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATC ATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTTGAAAAA]




>consensus_5586#0
CGTGGCGACTTGAAGGACACGATGCGATTGTGGGATTGTTGCTGATGCCACCAAGTTTGC
CATGAGTGAATGGAAAATGCTCTTGGCTCGACATGAGTCTGGTTGCTGATTGCGTGCCCC
GAACCGAATTGTTGCGCTGGGTTTGTTTGTAAGTAAGCTAAGTAAATAGTGACACGATGG
AGCTGCGAGAGGACAAGAATTTGATGTTGTTTATGCAAGGGGAAACCATCTAGGGTTAGT
GATAATACTAATAAATTGAGGCCACACTTTGTGCATGTGCTGACCCTTGAATGATGAGAA
ATGCGAAATAATGATAGAAATGCAAAAGGTTAAATAAGAAGAAAGTCCAATTTTGGAAGA
TATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTA
TAGAAGAGGGAAATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTT
GAAAAA

consensusID : consensus_5586#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [AGGACACCGATCGATTGTGGATTTTGCTATCCACCATTTTCCATAGTAATGAAAATGCTCTTGGCTCGACATAGTCTGTTCTATTCGTCCCGAACCGAATTTTCGCTGGGTTGTTTGTAAGTAAGCTAAGTAAATAGTACACGATGGAGCTCGAGAGGACAGAATTTATTTTTTATCAAGGGAAAGAATCTAGGGTTAGTGAAAACTAATAAATTAGGCCAACTTTGTCATTCTACCCTTAATATAGAAATCGAAATAATATAGAAATCAAAAGGTTAAAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGG]

[+] EMBL AU174933             [AGGACACCGATCGATTGTGGATTTTGCTATCCACCATTTTCCATAGTAATGAAAATGCTCTTGGCTCGACATAGTCTGTTCTATTCGTCCCGAACCGAATTTTCGCTGGGTTGTTTGTAAGTAAGCTAAGTAAATAGTACACGATGGAGCTCGAGAGGACAGAATTTATTTTTTATCAAGGGAAAGAATCTAGGGTTAGTGAAAACTAATAAATTAGGCCAACTTTGTCATTCTACCCTTAATATAGAAATCGAAATAATATAGAAATCAAAAGGTTAAAATAAGAAGAAAGTCCAATTTTGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTATAGAAGAGGGAAATGCTTTATCGAAGG]




>consensus_5586#1
AGGACACCGATCGATTGTGGATTTTGCTATCCACCATTTTCCATAGTAATGAAAATGCTC
TTGGCTCGACATAGTCTGTTCTATTCGTCCCGAACCGAATTTTCGCTGGGTTGTTTGTAA
GTAAGCTAAGTAAATAGTACACGATGGAGCTCGAGAGGACAGAATTTATTTTTTATCAAG
GGAAAGAATCTAGGGTTAGTGAAAACTAATAAATTAGGCCAACTTTGTCATTCTACCCTT
AATATAGAAATCGAAATAATATAGAAATCAAAAGGTTAAAATAAGAAGAAAGTCCAATTT
TGGAAGATATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCG
ATTTCTATAGAAGAGGGAAATGCTTTATCGAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5586#0      CGTGGCGACTTGAAGGACACGATGCGATTGTGGGATTGTTGCTGATGCCACCAAGTTTGC 60
consensus_5586#1      -------------AGGACACCGATCGATTGTGGATTT--TGCTAT--CCACCA--TTTTC 41
                                   *******    *********  **  ****    ******  *** *

consensus_5586#0      CATGAGTGAATGGAAAATGCTCTTGGCTCGACATGAGTCTGGTTGCTGATTGCGTGCCCC 120
consensus_5586#1      CAT-AGTAA--TGAAAATGCTCTTGGCTCGACAT-AGTCTGTTC------TATTCGTCCC 91
                      *** *** *   ********************** ****** *       *    * ***

consensus_5586#0      GAACCGAATTGTTGCGCTGGGTTTGTTTGTAAGTAAGCTAAGTAAATAGTGACACGATGG 180
consensus_5586#1      GAACCGAATTTT--CGCTGGGTT-GTTTGTAAGTAAGCTAAGTAAATAGT-ACACGATGG 147
                      ********** *  ********* ************************** *********

consensus_5586#0      AGCTGCGAGAGGACAAGAATTTGATGTTGTTTATGCAAGGGGAAACCATCTAGGGTTAGT 240
consensus_5586#1      AGCT-CGAGAGGACA-GAATT---TATTTTTTATC--AAGGGAAAGAATCTAGGGTTAGT 200
                      **** ********** *****   * ** *****   * ******  *************

consensus_5586#0      GATAATACTAATAAATTGAGGCCACACTTTGTGCATGTGCTGACCCTTGAATGATGAGAA 300
consensus_5586#1      G--AAAACTAATAAATT-AGGCCA-ACTTTGT---CATTCTACCCTTAATAT----AGAA 249
                      *  ** *********** ****** *******     * **  ** *   **    ****

consensus_5586#0      ATGCGAAATAATGATAGAAATGCAAAAGGTTAAATAAGAAGAAAGTCCAATTTTGGAAGA 360
consensus_5586#1      AT-CGAAATAAT-ATAGAAATCAAAAGGTTAAAATAAGAAGAAAGTCCAATTTTGGAAGA 307
                      ** ********* ********  *** * * *****************************

consensus_5586#0      TATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTA 420
consensus_5586#1      TATGGGAAAACTCTTTTGATTAAAAGTCTATCAGAATCAATCGCTCATATTCGATTTCTA 367
                      ************************************************************

consensus_5586#0      TAGAAGAGGGAAATGCTTTATCGAAGGAAATAAGAAAAAAGGGTATGTTGCTACTCTTTT 480
consensus_5586#1      TAGAAGAGGGAAATGCTTTATCGAAGG--------------------------------- 394
                      ***************************                                 

consensus_5586#0      GAAAAA 486
consensus_5586#1      ------