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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1848 fasta sequence
[CACACAGCCAAACTCATCCTCCTTTTTTTTTTTTCTTCCATCCCCTCCCTTGAGAGAGATTGAGATTGAGGCTGCCACCGCCCGCGCGCATCGATCGATTCTACTGGAGTGGAGATCGAGCGAGGATATATAGATCTGGACTGGACTGGAGCTCCGATCAACATACTACTACTACTCGTATATAATAAGCCAAGGAAGGCTAATGGCGTCGATCCGGCGGCCGCACTCACCGGCAAAGCAGCAGCACCTTCTCCGCCACGGACACCTCGGCCCCTTCGCCTCTTCCTCCCCGCCATCCTCGCCGCTCCGCCACTCCTCGTCTTCGTCTTCTCCCAGATCAGCGGCTCATCACCACCACCATCTGCTTGCTGCTGCTGGGCACACCTCCTTCCGCCGCCCGCTCCCTCGCTTCGCCGCCTTCTTCCTCCTCGGCTCCTTCCTCGGCCTCCTCCACTTCCTCTCCCATCTCCCCCGACCCCTGGGCCCCATCCCCAATCCTAATTCCCACCACCGCCACCGCGATCCATTCCCCATCCTCCAACACCCGCACCCGCCATCCACCCCCCACAGCAACCACAAGCTGCTCATCGTCGTCACCCCCACGCGCGCCCGCCCCTCCCAGGCCTACTACCTCACCAGGATGGCCCACACCCTCCGCCTCCTCCACGACTCACCCCTCCTCTGGATCGTCGTCCAGGCCGGTAACCCCACCCCGGAAGCCGCCGCCGCCCTCCGCCGCACCGCCGTCTTGCACCGCTATGTCGGATGCTGCCACAACATCAATGCCTCCGCCCCTGACTTCCGCCCCCACCAGATCAACGCCGCCCTCGACATCGTCGACAACCACCGCCTCGACGGCGTCCTCTACTTCGCCGACGAGGAGGGCGTCTACTCCCTCCACCTCTTCCACCACCTCCGCCAAATCAGGAGGTTTGCCACATGGCCTGTTCCAGAAATCTCTCAACACACAAACGAGGTGGTTCTCCAAGGCCCTGTATGTAAACAGGGCCAGGTTGTGGGATGGCACACAACCCACGACGGGAACAAGCTGCGCAGATTTCATCTTGCCATGTCCGGTTTCGCATTCAACAGCACCATGCTCTGGGATCCCAAGCTCAGGTCCCATTTGGCATGGAATTCGATCAGGCATCCAGAAATGGTGAAAGAAAGTCTCCAAGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTATGTTCACCAAAGTGCTAACTCCTTTGACAGGCATATACTGTAGAAATTAGGCCTTGGCAAGTGTGCAGAGACATTTATACTTTGGAGAGCATCTCTCGGAAAGGGAAGACTTCTTCAGCTGTTGCTTCATAATTTTGTAGGATTCATAATTGCTTGGACGGCCTCTATCCAAATCCAATCCAAAAACCTTCTCTTTGCCGTGTATATGTTCATGTTGTAGCAATTTGTATTCATTTTTTTGGGTTCAAAAGCCAAACGGCAATACATGTTTCAGGATATTTAATTTAATAGCATTCTTTCTTCTGGCCTGTGCAGATTACTGCCTAAATGGACCTTTCCAAAATTTGGCATTACCAAAATTTTGGCAAGCTGACAGCATTGTCTCGTTTATTCGTGGAATAAGTCAGGTTGAAAATTTAAATTTTGACTGATAAGCATAAGTGAAAAGATGAGGCCCGGTAGGCTAAATGTGATGTTGCCAAATTTTTT]
[+] EMBL AK070873 [CACACAGCCAAACTCATCCTCCTTTTTTTTTTTTCTTCCATCCCCTCCCTTGAGAGAGATTGAGATTGAGGCTGCCACCGCCCGCGCGCATCGATCGATTCTACTGGAGTGGAGATCGAGCGAGGATATATAGATCTGGACTGGACTGGAGCTCCGATCAACATACTACTACTACTCGTATATAATAAGCCAAGGAAGGCTAATGGCGTCGATCCGGCGGCCGCACTCACCGGCAAAGCAGCAGCACCTTCTCCGCCACGGACACCTCGGCCCCTTCGCCTCTTCCTCCCCGCCATCCTCGCCGCTCCGCCACTCCTCGTCTTCGTCTTCTCCCAGATCAGCGGCTCATCACCACCACCATCTGCTTGCTGCTGCTGGGCACACCTCCTTCCGCCGCCCGCTCCCTCGCTTCGCCGCCTTCTTCCTCCTCGGCTCCTTCCTCGGCCTCCTCCACTTCCTCTCCCATCTCCCCCGACCCCTGGGCCCCATCCCCAATCCTAATTCCCACCACCGCCACCGCGATCCATTCCCCATCCTCCAACACCCGCACCCGCCATCCACCCCCCACAGCAACCACAAGCTGCTCATCGTCGTCACCCCCACGCGCGCCCGCCCCTCCCAGGCCTACTACCTCACCAGGATGGCCCACACCCTCCGCCTCCTCCACGACTCACCCCTCCTCTGGATCGTCGTCCAGGCCGGTAACCCCACCCCGGAAGCCGCCGCCGCCCTCCGCCGCACCGCCGTCTTGCACCGCTATGTCGGATGCTGCCACAACATCAATGCCTCCGCCCCTGACTTCCGCCCCCACCAGATCAACGCCGCCCTCGACATCGTCGACAACCACCGCCTCGACGGCGTCCTCTACTTCGCCGACGAGGAGGGCGTCTACTCCCTCCACCTCTTCCACCACCTCCGCCAAATCAGGAGGTTTGCCACATGGCCTGTTCCAGAAATCTCTCAACACACAAACGAGGTGGTTCTCCAAGGCCCTGTATGTAAACAGGGCCAGGTTGTGGGATGGCACACAACCCACGACGGGAACAAGCTGCGCAGATTTCATCTTGCCATGTCCGGTTTCGCATTCAACAGCACCATGCTCTGGGATCCCAAGCTCAGGTCCCATTTGGCATGGAATTCGATCAGGCATCCAGAAATGGTGAAAGAAAGTCTCCAAGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTATGTTCACCAAAGTGCTAACTCCTTTGACAGGCATATACTGTAGAAATTAGGCCTTGGCAAGTGTGCAGAGACATTTATACTTTGGAGAGCATCTCTCGGAAAGGGAAGACTTCTTCAGCTGTTGCTTCATAATTTTGTAGGATTCATAATTGCTTGGACGGCCTCTATCCAAATCCAATCCAAAAACCTTCTCTTTGCCGTGTATATGTTCATGTTGTAGCAATTTGTATTCATTTTTTTGGGTTCAAAAGCCAAACGGCAATACATGTTTCAGGATATTTAATTTAATAGCATTCTTTCTTCTGGCCTGTGCAGATTACTGCCTAAATGGACCTTTCCAAAATTTGGCATTACCAAAATTTTGGCAAGCTGACAGCATTGTCTCGTTTATTCGTGGAATAAGTCAGGTTGAAAATTTAAATTTTGACTGATAAGCATAAGTGAAAAGATGAGGCCCGGTAGGCTAAATGTGATGTTGCCAAATTTTTT]
consensusID : consensus_5589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence
[GNTCATCATGTTGCCCCTTGCCAACTACTACACGAACCCCCAGATATCAGAGAAGGACAAAAAGAAGTGTACCAATAATGCTGAAAAATACNTCNCTGTAGCTTTCAAACACATGGTTATCNCCAAATGCAATACTGTGACCTTTTCTTGTACCCCCCCCCCCCCCTTCTTGGATTTTGTTTGCGATGCCTTTCTGCATGTAGTGTAACAGCTGAGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTAT]
[-] EMBL AU032124 [GNTCATCATGTTGCCCCTTGCCAACTACTACACGAACCCCCAGATATCAGAGAAGGACAAAAAGAAGTGTACCAATAATGCTGAAAAATACNTCNCTGTAGCTTTCAAACACATGGTTATCNCCAAATGCAATACTGTGACCTTTTCTTGTACCCCCCCCCCCCCCTTCTTGGATTTTGTTTGCGATGCCTTTCTGCATGTAGTGTAACAGCTGAGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTA ]
[-] EMBL OSR3319A [ TACTGTGACCTTTNCNTGTACCCCCCCCCCCCCCTTCTTGGATTTTGTTTGCGATGCCTTTCTGCATGTAGTGTAACAGCTGAGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAGCTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAACTGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACAGATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5589#0 CACACAGCCAAACTCATCCTCCTTTTTTTTTTTTCTTCCATCCCCTCCCTTGAGAGAGAT 60
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 TGAGATTGAGGCTGCCACCGCCCGCGCGCATCGATCGATTCTACTGGAGTGGAGATCGAG 120
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CGAGGATATATAGATCTGGACTGGACTGGAGCTCCGATCAACATACTACTACTACTCGTA 180
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 TATAATAAGCCAAGGAAGGCTAATGGCGTCGATCCGGCGGCCGCACTCACCGGCAAAGCA 240
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 GCAGCACCTTCTCCGCCACGGACACCTCGGCCCCTTCGCCTCTTCCTCCCCGCCATCCTC 300
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 GCCGCTCCGCCACTCCTCGTCTTCGTCTTCTCCCAGATCAGCGGCTCATCACCACCACCA 360
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 TCTGCTTGCTGCTGCTGGGCACACCTCCTTCCGCCGCCCGCTCCCTCGCTTCGCCGCCTT 420
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CTTCCTCCTCGGCTCCTTCCTCGGCCTCCTCCACTTCCTCTCCCATCTCCCCCGACCCCT 480
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 GGGCCCCATCCCCAATCCTAATTCCCACCACCGCCACCGCGATCCATTCCCCATCCTCCA 540
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 ACACCCGCACCCGCCATCCACCCCCCACAGCAACCACAAGCTGCTCATCGTCGTCACCCC 600
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CACGCGCGCCCGCCCCTCCCAGGCCTACTACCTCACCAGGATGGCCCACACCCTCCGCCT 660
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CCTCCACGACTCACCCCTCCTCTGGATCGTCGTCCAGGCCGGTAACCCCACCCCGGAAGC 720
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CGCCGCCGCCCTCCGCCGCACCGCCGTCTTGCACCGCTATGTCGGATGCTGCCACAACAT 780
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CAATGCCTCCGCCCCTGACTTCCGCCCCCACCAGATCAACGCCGCCCTCGACATCGTCGA 840
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CAACCACCGCCTCGACGGCGTCCTCTACTTCGCCGACGAGGAGGGCGTCTACTCCCTCCA 900
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CCTCTTCCACCACCTCCGCCAAATCAGGAGGTTTGCCACATGGCCTGTT-CCAGAAATCT 959
consensus_5589#1 ------------------------------GNTCATCATGTTGCCCCTTGCCAACTACTA 30
* * ** * *** ** *** *
consensus_5589#0 CTC-AACACACAAACGAGGTGGTTCTCCAAGGCCCTGTATGTAAACAGGGCCAGGTTGTG 1018
consensus_5589#1 CACGAACCCCCAGATATCAGAGAAGGACAAAAAGAAGTGTACCAATAATGCTGAAAAATA 90
* * *** * ** * * *** ** * ** * ** *
consensus_5589#0 GGATGGCACACAACCCACGACGGGAACAAGCTGCGCAGATTTCATCTTGCCATGTCCGGT 1078
consensus_5589#1 CNTCNCTGT--AGCTTTCAAACACATGGTTATCNCCAAATGCAATACTGTGACCTTT--T 146
* * * * * * ** ** ** ** * * *
consensus_5589#0 TTCGCATTCAACAGCACCATGCTCTGGGATCCCAAGCTCAGGTCCCATTTGGCATGGAAT 1138
consensus_5589#1 CTTGTACCCC-CCCCCCCCCCTTCTTGGATTTTGT-TTGCGATGCCTTTCTGCATGTAGT 204
* * * * * * ** *** **** * * * ** ** ***** * *
consensus_5589#0 TCGATCAGGCATCCAGAAATGGTGAAAGAAAGTCTCCAAGGAAGCGCGTTTGTAGAGCAG 1198
consensus_5589#1 GTAA-CAGCTG---AGATGAGATGGTTGTTACTTTGCAGGGAAGCGCGTTTGTAGAGCAG 260
* *** *** * ** * * * * ** *********************
consensus_5589#0 CTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAA-TAATGAAC 1257
consensus_5589#1 CTAGTGGAGGATGAAAGCCAGATGGAAGGCATACCTGCTGACTGCTCTCAAATAATGAAC 320
*************************************************** ********
consensus_5589#0 TGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACA 1317
consensus_5589#1 TGGCATGTGCCATTCGGATCTGAAAGTGTTGTCTATCCTAAAGGATGGCGGGTTGCTACA 380
************************************************************
consensus_5589#0 GATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTATGTTCACCAAAGTGCTAA 1377
consensus_5589#1 GATCTGGATGTAATTATCCCTCTAAAATAGTATCACCAGCTAT----------------- 423
*******************************************
consensus_5589#0 CTCCTTTGACAGGCATATACTGTAGAAATTAGGCCTTGGCAAGTGTGCAGAGACATTTAT 1437
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 ACTTTGGAGAGCATCTCTCGGAAAGGGAAGACTTCTTCAGCTGTTGCTTCATAATTTTGT 1497
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 AGGATTCATAATTGCTTGGACGGCCTCTATCCAAATCCAATCCAAAAACCTTCTCTTTGC 1557
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 CGTGTATATGTTCATGTTGTAGCAATTTGTATTCATTTTTTTGGGTTCAAAAGCCAAACG 1617
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 GCAATACATGTTTCAGGATATTTAATTTAATAGCATTCTTTCTTCTGGCCTGTGCAGATT 1677
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 ACTGCCTAAATGGACCTTTCCAAAATTTGGCATTACCAAAATTTTGGCAAGCTGACAGCA 1737
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 TTGTCTCGTTTATTCGTGGAATAAGTCAGGTTGAAAATTTAAATTTTGACTGATAAGCAT 1797
consensus_5589#1 ------------------------------------------------------------
consensus_5589#0 AAGTGAAAAGATGAGGCCCGGTAGGCTAAATGTGATGTTGCCAAATTTTTT 1848
consensus_5589#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||